Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C20G5 Lonicera japonica HOM05D003507 ORTHO05D004324 8.4e-249 863.2 433 100.0
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 1.7e-193 679.5 396 85.9
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 3.8e-193 678.3 396 85.6
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 1.0e-190 670.2 396 83.8
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 2.0e-189 666.0 396 84.1
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.7e-189 663.7 396 84.1
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.7e-189 663.7 396 84.1
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 3.5e-186 655.2 428 77.8
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 7.7e-186 654.1 394 83.8
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 1.0e-185 653.7 396 80.3
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 8.5e-185 650.6 396 83.8
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 4.2e-184 648.3 395 83.3
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 1.2e-183 646.7 396 82.3
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 1.6e-183 646.4 396 81.8
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 4.7e-183 644.8 397 81.6
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 6.1e-183 644.4 396 81.8
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 6.1e-183 644.4 396 81.8
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 1.4e-182 643.3 396 81.1
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 1.4e-182 643.3 398 82.2
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 1.4e-182 643.3 396 80.6
Nitab4.5_0001450g0180 Nicotiana tabacum HOM05D003507 ORTHO05D004324 1.4e-182 643.3 411 78.8
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 4.0e-182 641.7 392 81.9
Solyc11g008380.3 Solanum lycopersicum HOM05D003507 ORTHO05D004324 8.8e-182 640.6 413 79.2
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 8.8e-182 640.6 396 83.1
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 2.6e-181 639.0 396 81.1
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 4.4e-181 638.3 395 80.3
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 4.4e-181 638.3 388 81.7
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 5.7e-181 637.9 397 81.1
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 7.5e-181 637.5 396 81.1
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 7.5e-181 637.5 384 82.0
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 9.8e-181 637.1 397 81.4
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 9.8e-181 637.1 392 81.6
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 1.7e-180 636.3 397 79.8
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 2.2e-180 636.0 396 81.1
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 2.8e-180 635.6 396 81.1
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 2.8e-180 635.6 397 80.9
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 3.7e-180 635.2 399 80.7
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 1.1e-179 633.6 391 81.1
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 1.1e-179 633.6 388 81.7
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 1.4e-179 633.3 396 79.8
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 1.4e-179 633.3 396 79.8
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 1.4e-179 633.3 396 79.8
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 1.4e-179 633.3 397 80.4
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 2.4e-179 632.5 399 81.0
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 2.4e-179 632.5 398 80.2
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 5.4e-179 631.3 396 79.5
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 5.4e-179 631.3 390 80.3
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 7.0e-179 630.9 396 79.5
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 9.1e-179 630.6 397 79.1
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 9.1e-179 630.6 396 81.8
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 9.1e-179 630.6 391 80.8
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 1.6e-178 629.8 398 80.9
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 2.0e-178 629.4 396 81.1
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 3.5e-178 628.6 389 80.5
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 3.5e-178 628.6 395 80.8
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 4.5e-178 628.2 396 80.1
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 5.9e-178 627.9 396 81.1
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 5.9e-178 627.9 396 81.1
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.3e-177 626.7 395 80.8
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 1.7e-177 626.3 382 81.4
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 1.7e-177 626.3 398 79.1
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 1.7e-177 626.3 396 78.8
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 5.0e-177 624.8 391 79.5
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 5.0e-177 624.8 389 79.7
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.1e-176 623.6 398 80.4
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 1.9e-176 622.9 398 78.1
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 1.2e-175 620.2 392 78.8
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 6.1e-175 617.8 397 78.6
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 8.0e-175 617.5 392 78.6
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 1.0e-174 617.1 397 78.3
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 1.8e-174 616.3 392 78.3
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.8e-174 616.3 396 79.0
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 2.3e-174 615.9 392 80.1
Peaxi162Scf00145g01313 Petunia axillaris HOM05D003507 ORTHO05D004324 2.3e-174 615.9 383 80.7
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 3.0e-174 615.5 391 79.3
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 3.0e-174 615.5 395 78.5
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 3.0e-174 615.5 396 78.8
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 3.0e-174 615.5 394 78.9
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 6.8e-174 614.4 396 78.3
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 8.9e-174 614.0 396 78.8
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 8.9e-174 614.0 396 78.8
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 8.9e-174 614.0 396 78.0
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.2e-173 613.6 396 78.5
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.2e-173 613.6 396 78.5
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 5.7e-173 611.3 396 78.3
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 2.8e-172 609.0 395 77.5
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 8.3e-172 607.4 394 77.7
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 1.1e-171 607.1 484 66.3
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 1.8e-171 606.3 397 76.1
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.8e-171 606.3 391 77.5
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 1.6e-170 603.2 397 76.3
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 3.5e-170 602.1 400 75.5
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 4.5e-170 601.7 339 86.4
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 4.5e-170 601.7 397 75.8
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 4.5e-170 601.7 396 76.3
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 1.0e-169 600.5 392 77.8
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 1.3e-169 600.1 397 75.6
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 1.1e-168 597.0 392 77.3
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 1.1e-168 597.0 394 76.1
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 1.9e-168 596.3 394 73.9
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 1.9e-168 596.3 392 76.0
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 3.3e-168 595.5 394 75.9
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 1.2e-167 593.6 393 75.3
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 1.2e-167 593.6 370 78.9
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 1.6e-167 593.2 391 76.5
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 2.8e-167 592.4 355 81.1
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 3.6e-167 592.0 391 77.2
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 3.6e-167 592.0 392 76.5
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 1.4e-166 590.1 391 75.7
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 1.8e-166 589.7 391 77.2
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 1.8e-166 589.7 391 74.2
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 3.1e-166 589.0 391 77.0
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 5.2e-166 588.2 391 73.9
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 2.0e-165 586.3 391 76.7
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 2.6e-165 585.9 391 74.9
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 2.6e-165 585.9 396 76.3
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 9.8e-165 583.9 393 74.3
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 1.3e-164 583.6 391 75.4
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 3.5e-162 575.5 392 73.2
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 3.5e-162 575.5 392 73.2
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.3e-161 573.5 391 72.1
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 3.0e-161 572.4 396 73.7
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 1.1e-160 570.5 395 73.7
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 3.3e-160 568.9 391 72.1
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 9.5e-160 567.4 391 71.4
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 2.8e-159 565.8 395 71.9
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 2.6e-157 559.3 397 72.8
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 3.4e-157 558.9 359 77.7
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 9.8e-157 557.4 449 65.5
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 8.3e-156 554.3 330 82.1
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 2.5e-152 542.7 513 58.1
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 9.5e-152 540.8 391 71.9
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 6.0e-146 521.5 394 67.3
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 1.3e-145 520.4 389 67.4
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 9.5e-144 514.2 390 65.9
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 4.7e-143 511.9 396 68.7
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 5.2e-142 508.4 398 67.6
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 5.8e-141 505.0 379 69.4
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 1.4e-139 500.4 386 65.8
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 4.2e-139 498.8 272 86.8
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 3.9e-137 492.3 271 84.5
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 9.0e-134 481.1 385 63.4
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 2.9e-132 476.1 390 61.0
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 4.2e-131 472.2 395 67.1
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 2.1e-130 469.9 348 66.1
Aqoxy1G02532 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 8.7e-129 464.5 375 62.7
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 4.0e-126 455.7 337 68.2
Oeu051137.1 Olea europaea HOM05D003507 ORTHO05D004324 9.6e-120 434.5 285 78.9
Cpa.g.sc2869.2 Carica papaya HOM05D003507 ORTHO05D004324 1.1e-118 431.0 226 89.8
Cpa.g.sc3863.1 Carica papaya HOM05D003507 ORTHO05D004324 4.9e-116 422.2 279 78.5
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 4.2e-115 419.1 228 86.0
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 2.5e-112 409.8 228 84.2
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 2.6e-93 346.7 354 52.0
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 1.2e-90 337.8 347 51.3
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 1.3e-84 317.8 291 59.5
Cfa022775 Carpinus fangiana HOM05D003507 ORTHO05D004324 1.8e-81 307.4 426 44.1
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 3.0e-81 306.6 359 46.0
Actinidia06739 Actinidia chinensis HOM05D003507 ORTHO05D004324 5.0e-76 289.3 153 90.2
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 1.2e-74 284.6 213 64.3
CSS0003260 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.2e-71 273.9 160 83.1
SMO361G0200 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 7.0e-70 268.9 173 73.4
CSS0013186 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.3e-68 264.6 150 85.3
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 6.1e-66 255.8 162 72.8
CSS0002523 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 6.8e-65 252.3 161 77.0
Os04g0224900 Oryza sativa ssp. japonica HOM05D003507 ORTHO05D004324 8.8e-65 251.9 139 84.9
CSS0038211 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 9.2e-54 215.3 161 69.6
Cre13.g577450 Chlamydomonas reinhardtii HOM05D003507 ORTHO05D004324 2.3e-52 210.7 468 33.5
SEGI_22983 Sequoiadendron giganteum HOM05D003507 ORTHO05D004324 3.9e-52 209.9 111 87.4
CSS0016001 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 5.0e-52 209.5 161 67.7
BcaNung06282 Brassica carinata HOM05D003507 ORTHO05D004324 4.1e-38 163.3 81 93.8
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 6.0e-37 159.5 81 90.1
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 1.1e-33 148.7 330 31.5
BcaC05g29473 Brassica carinata HOM05D003507 ORTHO05D021543 4.1e-30 136.7 114 67.5
arahy.Tifrunner.gnm1.ann1.2YR0GK Arachis hypogaea HOM05D003507 ORTHO05D021543 3.5e-29 133.7 151 54.3
CDE09G1104 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 6.0e-29 132.9 160 50.6
Dinv22443 Davidia involucrata HOM05D003507 ORTHO05D182987 2.4e-25 120.9 134 56.0
BcaNung06832 Brassica carinata HOM05D003507 ORTHO05D004324 9.3e-22 109.0 61 83.6
TPR.G40483 Trifolium pratense HOM05D003507 ORTHO05D004324 6.2e-18 96.3 46 93.5
Lalb_Chr01g0010251 Lupinus albus HOM05D003507 ORTHO05D021543 4.0e-17 93.6 61 77.0
Os04g0225001 Oryza sativa ssp. japonica HOM05D003507 ORTHO05D021543 2.0e-16 91.3 53 81.1
A06p14850 Brassica napus HOM05D003507 ORTHO05D021543 1.0e-12 79.0 53 75.5
Lalb_Chr01g0010241 Lupinus albus HOM05D003507 ORTHO05D004324 5.3e-09 66.6 37 75.7


User provided reference genes

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