Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 0.0e+00 1241.9 625 100.0
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 3.1e-188 662.5 555 64.5
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 6.5e-186 654.8 550 61.8
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 9.1e-180 634.4 581 58.5
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 5.0e-178 628.6 553 59.0
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 2.0e-174 616.7 568 57.9
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 5.6e-169 598.6 525 58.7
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 8.3e-165 584.7 552 55.3
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 1.9e-164 583.6 556 56.7
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 4.3e-161 572.4 512 55.9
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 5.4e-156 555.4 519 56.5
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.6e-155 553.9 578 52.6
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 1.0e-154 551.2 538 54.3
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 5.0e-154 548.9 547 53.2
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 5.6e-153 545.4 539 55.5
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 1.4e-151 540.8 560 51.8
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 2.3e-151 540.0 546 53.8
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 3.1e-151 539.7 582 48.5
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 8.9e-151 538.1 529 55.8
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.0e-150 537.0 541 51.9
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 2.6e-150 536.6 545 53.8
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 2.6e-150 536.6 538 52.0
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 7.5e-150 535.0 553 51.4
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 1.1e-148 531.2 518 53.3
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.7e-147 526.6 553 51.0
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 1.0e-146 524.6 560 51.2
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.6e-146 521.9 536 51.9
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 1.8e-143 513.8 531 50.8
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 2.4e-143 513.5 608 48.4
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 4.4e-142 509.2 538 51.7
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 5.4e-140 502.3 542 50.0
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 1.2e-139 501.1 534 50.0
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.3e-138 496.9 534 51.3
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 5.1e-138 495.7 542 50.4
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.1e-137 494.6 538 50.6
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.9e-137 493.8 552 49.3
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.5e-137 493.4 538 50.4
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 4.3e-137 492.7 505 51.5
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 2.8e-136 490.0 553 48.6
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 4.7e-136 489.2 552 48.6
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.4e-135 486.9 538 50.0
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 5.2e-135 485.7 594 46.8
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 5.2e-135 485.7 519 52.6
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.3e-130 471.1 538 47.8
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.3e-130 470.3 560 48.9
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 6.6e-130 468.8 526 50.2
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 8.7e-130 468.4 560 48.2
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 2.5e-129 466.8 598 45.8
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 2.5e-129 466.8 473 52.4
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 1.3e-128 464.5 551 48.8
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.6e-128 464.2 550 47.5
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.8e-128 463.4 566 45.9
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 8.1e-128 461.8 552 47.3
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 1.4e-127 461.1 555 46.1
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.2e-126 458.0 549 46.4
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.5e-126 457.6 539 46.2
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.9e-124 450.7 546 46.9
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.0e-122 443.4 544 47.1
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 5.1e-122 442.6 575 44.5
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 1.5e-121 441.0 565 45.7
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 2.5e-121 440.3 541 45.8
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 4.8e-120 436.0 550 45.6
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.1e-119 434.9 561 44.6
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.4e-119 434.5 561 45.3
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 3.4e-118 429.9 562 45.2
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 4.5e-118 429.5 561 44.9
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.8e-117 426.4 515 47.2
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 8.4e-117 425.2 507 48.9
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.1e-116 424.9 564 43.6
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 2.5e-116 423.7 561 43.7
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 2.1e-115 420.6 536 44.2
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 3.3e-113 413.3 572 44.6
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 4.3e-113 412.9 546 44.0
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 9.6e-113 411.8 500 47.2
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 2.8e-112 410.2 402 55.0
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 2.8e-112 410.2 570 41.4
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.8e-111 407.5 557 42.4
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 3.4e-110 403.3 478 47.1
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.4e-108 397.9 348 58.0
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 5.1e-106 389.4 552 42.6
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 8.7e-106 388.7 414 51.7
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 7.4e-105 385.6 570 40.7
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 9.7e-105 385.2 436 51.1
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 8.2e-104 382.1 561 42.1
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 2.0e-102 377.5 513 43.1
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 1.1e-100 371.7 383 50.9
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.9e-100 370.9 537 39.5
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 7.9e-99 365.5 415 49.9
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 2.4e-95 354.0 370 51.9
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-94 351.7 340 52.6
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 7.2e-92 342.4 471 43.3
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.6e-91 341.3 610 37.7
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 5.1e-90 336.3 496 38.9
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.4e-84 318.2 489 36.8
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 2.1e-83 314.3 495 37.8
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.0e-74 285.4 238 59.2
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 2.3e-74 284.3 594 32.5
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 8.3e-72 275.8 245 55.5
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.1e-71 275.4 417 41.0
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 7.7e-70 269.2 314 47.5
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.4e-66 258.5 310 44.2
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 3.0e-66 257.3 343 43.1
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.0e-61 242.3 683 29.6
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 4.0e-58 230.3 255 46.7
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 2.4e-47 194.5 270 44.4
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 3.5e-46 190.7 128 71.1
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 2.5e-44 184.5 126 67.5
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 6.2e-43 179.9 123 66.7
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 1.1e-42 179.1 723 25.4
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 4.4e-41 173.7 121 66.1
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 8.3e-40 169.5 118 67.8
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.4e-39 168.7 217 43.3
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 2.1e-38 164.9 117 67.5
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 2.3e-37 161.4 152 54.6
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 1.9e-36 158.3 128 57.0
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 3.3e-36 157.5 150 52.7
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 5.6e-36 156.8 136 55.9
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.2e-33 149.1 122 53.3
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 1.5e-33 148.7 123 57.7
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.6e-30 138.7 117 54.7
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 1.1e-26 125.9 88 63.6
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.4e-26 125.6 497 27.0
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.4e-26 124.8 110 56.4
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 5.2e-26 123.6 146 49.3
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 8.9e-26 122.9 80 63.8
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 3.8e-24 117.5 129 45.7
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 4.9e-24 117.1 101 51.5
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.9e-21 107.5 160 36.9
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 5.6e-20 103.6 87 48.3
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 2.1e-19 101.7 77 58.4
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 2.4e-18 98.2 114 49.1
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 4.0e-18 97.4 108 50.0
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 4.4e-17 94.0 90 50.0
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 2.2e-16 91.7 86 52.3
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 2.9e-16 91.3 132 42.4
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 2.7e-14 84.7 95 42.1
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 2.7e-14 84.7 77 50.6
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 3.5e-14 84.3 77 48.1
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 4.6e-14 84.0 52 78.8
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.6e-13 80.1 78 46.2
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 8.7e-13 79.7 68 50.0
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.5e-12 78.2 77 46.8
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.6e-12 76.3 84 41.7
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.6e-12 76.3 84 41.7
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.9e-10 70.1 76 50.0
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.9e-10 70.1 115 31.3
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 9.0e-10 69.7 54 63.0
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 4.5e-09 67.4 47 59.6
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.3e-08 65.9 201 26.4
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 2.2e-08 65.1 53 58.5
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.2e-08 65.1 40 55.0
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 5.4e-07 60.5 63 55.6
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 1.2e-06 59.3 42 57.1


User provided reference genes

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