Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1196G7 Lonicera japonica HOM05D000880 ORTHO05D007053 6.0e-132 474.2 237 100.0
Atru.chr5.1139 Acer truncatum HOM05D000880 ORTHO05D007053 4.9e-102 374.8 240 76.7
DCAR_018329 Daucus carota HOM05D000880 ORTHO05D007053 4.6e-100 368.2 241 77.6
Actinidia01490 Actinidia chinensis HOM05D000880 ORTHO05D007053 1.0e-99 367.1 273 71.1
CSS0009761 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D007053 1.5e-95 353.2 273 68.1
Migut.D00148 Erythranthe guttata HOM05D000880 ORTHO05D007053 1.5e-95 353.2 273 68.1
Dinv33058 Davidia involucrata HOM05D000880 ORTHO05D007053 2.6e-95 352.4 273 68.5
Prupe.8G262200 Prunus persica HOM05D000880 ORTHO05D007053 3.8e-94 348.6 271 67.5
TWI59G0706 Tripterygium wilfordii HOM05D000880 ORTHO05D007053 3.8e-94 348.6 273 66.3
Eucgr.K03489 Eucalyptus grandis HOM05D000880 ORTHO05D007053 5.0e-94 348.2 273 66.3
MSTRG.9184 Avicennia marina HOM05D000880 ORTHO05D007053 6.5e-94 347.8 273 66.7
Rhsim13G0009800 Rhododendron simsii HOM05D000880 ORTHO05D007053 6.5e-94 347.8 273 66.7
Ah.15g093160 Amaranthus hybridus HOM05D000880 ORTHO05D007053 9.4e-93 344.0 275 65.5
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.2e-92 343.6 234 74.8
GSVIVG01028027001 Vitis vinifera HOM05D000880 ORTHO05D007053 1.2e-92 343.6 273 65.9
SGA_v2.0_scaffold1G00361 Striga asiatica HOM05D000880 ORTHO05D007053 3.6e-92 342.0 278 65.1
Manes.05G061800 Manihot esculenta HOM05D000880 ORTHO05D007053 1.4e-91 340.1 273 64.1
Cc01_g20910 Coffea canephora HOM05D000880 ORTHO05D007053 2.3e-91 339.3 274 67.9
Oeu054121.1 Olea europaea HOM05D000880 ORTHO05D007053 3.0e-91 339.0 291 63.2
Solyc09g075190.3 Solanum lycopersicum HOM05D000880 ORTHO05D007053 6.7e-91 337.8 275 65.8
Sopen09g030010 Solanum pennellii HOM05D000880 ORTHO05D007053 6.7e-91 337.8 275 65.8
Peaxi162Scf00001g42030 Petunia axillaris HOM05D000880 ORTHO05D007053 1.1e-90 337.0 273 65.2
MD03G1288900 Malus domestica HOM05D000880 ORTHO05D007053 2.0e-90 336.3 267 66.3
Hund05431 Selenicereus undatus HOM05D000880 ORTHO05D007053 2.0e-90 336.3 273 64.5
Potri.014G128400 Populus trichocarpa HOM05D000880 ORTHO05D007053 2.5e-90 335.9 269 65.8
AUR62008670 Chenopodium quinoa HOM05D000880 ORTHO05D007053 5.7e-90 334.7 275 64.0
SalBow3G0448 Salvia bowleyana HOM05D000880 ORTHO05D007053 1.3e-89 333.6 273 65.2
FvH4_2g25810 Fragaria vesca HOM05D000880 ORTHO05D007053 2.8e-89 332.4 267 66.3
Thecc.01G301400 Theobroma cacao HOM05D000880 ORTHO05D007053 2.8e-89 332.4 273 63.7
Nitab4.5_0002433g0080 Nicotiana tabacum HOM05D000880 ORTHO05D007053 3.7e-89 332.0 275 65.5
RcHm_v2.0_Chr6g0294121 Rosa chinensis HOM05D000880 ORTHO05D007053 4.8e-89 331.6 268 66.4
AUR62025574 Chenopodium quinoa HOM05D000880 ORTHO05D007053 8.2e-89 330.9 275 63.6
COL.COLO4_23337 Corchorus olitorius HOM05D000880 ORTHO05D007053 1.4e-88 330.1 273 62.6
Ciclev10018978m.g Citrus clementina HOM05D000880 ORTHO05D007053 2.4e-88 329.3 273 63.0
CAN.G472.10 Capsicum annuum HOM05D000880 ORTHO05D007053 3.1e-88 328.9 275 65.1
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 5.3e-88 328.2 267 65.9
Gohir.D11G119200 Gossypium hirsutum HOM05D000880 ORTHO05D007053 2.0e-87 326.2 273 62.6
MBI14_g32928_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D007053 2.6e-87 325.9 240 67.9
Lsat_1_v5_gn_9_43261 Lactuca sativa HOM05D000880 ORTHO05D007053 3.4e-87 325.5 273 60.8
PGR044G2013 Punica granatum HOM05D000880 ORTHO05D007053 3.4e-87 325.5 273 62.6
Gorai.007G127700 Gossypium raimondii HOM05D000880 ORTHO05D007053 1.0e-86 323.9 273 62.3
VMungo0720G1277 Vigna mungo HOM05D000880 ORTHO05D007053 1.0e-86 323.9 267 64.0
EL10Ac7g17514 Beta vulgaris HOM05D000880 ORTHO05D007053 2.9e-86 322.4 275 61.5
Glyma.02G017400 Glycine max HOM05D000880 ORTHO05D007053 6.5e-86 321.2 267 63.3
Gohir.A11G114100 Gossypium hirsutum HOM05D000880 ORTHO05D007053 6.5e-86 321.2 273 61.9
HanXRQChr04g0114151 Helianthus annuus HOM05D000880 ORTHO05D007053 6.5e-86 321.2 266 64.7
Phvul.007G147200 Phaseolus vulgaris HOM05D000880 ORTHO05D007053 6.5e-86 321.2 267 63.3
Sed0026689 Sechium edule HOM05D000880 ORTHO05D007053 1.2e-84 317.0 274 60.9
MELO3C015161.2 Cucumis melo HOM05D000880 ORTHO05D007053 2.7e-84 315.8 274 62.0
MELO3C026912.2 Cucumis melo HOM05D000880 ORTHO05D007053 2.7e-84 315.8 274 62.0
ECA247G4025 Erigeron canadensis HOM05D000880 ORTHO05D007053 3.6e-84 315.5 239 67.4
CsaV3_1G043050 Cucumis sativus L. HOM05D000880 ORTHO05D007053 4.7e-84 315.1 274 62.0
AL5G34740 Arabidopsis lyrata HOM05D000880 ORTHO05D007053 7.9e-84 314.3 275 60.0
Sc05g0003770 Simmondsia chinensis HOM05D000880 ORTHO05D007053 7.9e-84 314.3 276 62.3
AT3G53760 Arabidopsis thaliana HOM05D000880 ORTHO05D007053 1.4e-83 313.5 275 60.0
BcaB01g00245 Brassica carinata HOM05D000880 ORTHO05D007053 1.4e-83 313.5 277 59.9
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.8e-83 313.2 267 63.3
CARHR163650 Cardamine hirsuta HOM05D000880 ORTHO05D007053 3.0e-83 312.4 275 59.6
Glyma.10G017800 Glycine max HOM05D000880 ORTHO05D007053 3.0e-83 312.4 267 61.4
Aa31LG10G9270 Aethionema arabicum HOM05D000880 ORTHO05D007053 3.9e-83 312.0 274 59.1
Lj5g0001867 Lotus japonicus HOM05D000880 ORTHO05D007053 3.9e-83 312.0 267 61.4
Aqoxy2G02934 Aquilegia oxysepala HOM05D000880 ORTHO05D007053 5.1e-83 311.6 274 60.2
THA.LOC104802176 Tarenaya hassleriana HOM05D000880 ORTHO05D007053 5.1e-83 311.6 274 59.9
A09p46740 Brassica napus HOM05D000880 ORTHO05D007053 2.0e-82 309.7 276 59.1
BolC8t50508H Brassica oleracea HOM05D000880 ORTHO05D007053 3.3e-82 308.9 278 59.4
Cfa005905 Carpinus fangiana HOM05D000880 ORTHO05D007053 7.4e-82 307.8 272 61.4
ClCG03G013010 Citrullus lanatus HOM05D000880 ORTHO05D007053 9.7e-82 307.4 285 59.6
Carub.0005s2034 Capsella rubella HOM05D000880 ORTHO05D007053 1.3e-81 307.0 275 58.9
Gohir.D08G086000 Gossypium hirsutum HOM05D000880 ORTHO05D007053 1.3e-81 307.0 273 59.7
HanXRQChr10g0285001 Helianthus annuus HOM05D000880 ORTHO05D007053 1.3e-81 307.0 273 60.4
PSO384G2678 Papaver somniferum HOM05D000880 ORTHO05D007053 1.3e-81 307.0 274 59.5
TPR.G33956 Trifolium pratense HOM05D000880 ORTHO05D007053 1.3e-81 307.0 261 60.2
Lalb_Chr02g0146401 Lupinus albus HOM05D000880 ORTHO05D007053 1.7e-81 306.6 275 59.6
BcaC07g39735 Brassica carinata HOM05D000880 ORTHO05D007053 2.2e-81 306.2 278 59.0
C08p29070 Brassica napus HOM05D000880 ORTHO05D007053 2.2e-81 306.2 278 59.0
Sp5g08620 Schrenkiella parvula HOM05D000880 ORTHO05D007053 3.7e-81 305.4 275 58.9
unitig_32.g10658 Utricularia gibba HOM05D000880 ORTHO05D007053 3.7e-81 305.4 308 55.2
Haze_04945 Corylus avellana HOM05D000880 ORTHO05D007053 4.8e-81 305.1 272 61.0
Medtr1g088410 Medicago truncatula HOM05D000880 ORTHO05D007053 4.8e-81 305.1 267 59.6
PSO339G1812 Papaver somniferum HOM05D000880 ORTHO05D007053 1.1e-80 303.9 274 58.8
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 1.4e-80 303.5 271 58.3
Lalb_Chr21g0309241 Lupinus albus HOM05D000880 ORTHO05D007053 3.1e-80 302.4 275 59.3
ECA236G1870 Erigeron canadensis HOM05D000880 ORTHO05D007053 4.1e-80 302.0 264 61.4
QL12p028391 Quercus lobata HOM05D000880 ORTHO05D007053 5.3e-80 301.6 269 62.8
Psat6g165160 Pisum sativum HOM05D000880 ORTHO05D007053 9.1e-80 300.8 267 59.6
Thhalv10010145m.g Eutrema salsugineum HOM05D000880 ORTHO05D007053 1.0e-78 297.4 275 58.5
arahy.Tifrunner.gnm1.ann1.JXQ8LX Arachis hypogaea HOM05D000880 ORTHO05D007053 2.9e-78 295.8 272 59.2
arahy.Tifrunner.gnm1.ann1.VZZJ8Q Arachis hypogaea HOM05D000880 ORTHO05D007053 5.0e-78 295.0 274 59.1
SHI15144 Sapria himalayana HOM05D000880 ORTHO05D007053 4.2e-77 292.0 262 58.4
Gorai.004G090500 Gossypium raimondii HOM05D000880 ORTHO05D007053 3.6e-76 288.9 265 58.1
ATR0057G121 Amborella trichopoda HOM05D000880 ORTHO05D007053 2.6e-74 282.7 273 55.3
Ca_10329_v3 Cicer arietinum L. HOM05D000880 ORTHO05D007053 1.3e-73 280.4 267 57.3
Cpa.g.sc9.255 Carica papaya HOM05D000880 ORTHO05D007053 6.3e-73 278.1 273 56.8
Zm00001eb282720 Zea mays HOM05D000880 ORTHO05D007053 1.4e-72 276.9 278 54.3
Os05g0154500 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D007053 2.9e-70 269.2 278 53.6
HPP92_007056 Vanilla planifolia HOM05D000880 ORTHO05D007053 4.2e-69 265.4 273 53.8
Rhsim13G0043200 Rhododendron simsii HOM05D000880 ORTHO05D007053 1.2e-68 263.8 177 76.3
Gohir.A08G076500 Gossypium hirsutum HOM05D000880 ORTHO05D007053 1.4e-67 260.4 276 52.9
AUR62018540 Chenopodium quinoa HOM05D000880 ORTHO05D007053 1.6e-63 246.9 269 52.4
Mapoly0009s0235 Marchantia polymorpha HOM05D000880 ORTHO05D007053 1.3e-62 243.8 281 47.7
Nitab4.5_0001879g0170 Nicotiana tabacum HOM05D000880 ORTHO05D007053 5.0e-62 241.9 283 52.7
Lsat_1_v5_gn_8_164240 Lactuca sativa HOM05D000880 ORTHO05D007053 8.5e-62 241.1 239 56.9
MD11G1309000 Malus domestica HOM05D000880 ORTHO05D007053 7.5e-58 228.0 267 51.3
BraA09t40136Z Brassica rapa HOM05D000880 ORTHO05D007053 9.8e-58 227.6 221 55.7
vmacro02446 Vaccinium macrocarpon HOM05D000880 ORTHO05D007053 6.3e-57 224.9 173 69.9
BcaB01g00241 Brassica carinata HOM05D000880 ORTHO05D007053 2.7e-55 219.5 231 53.7
SMO364G0941 Selaginella moellendorffii HOM05D000880 ORTHO05D007053 1.0e-54 217.6 277 43.7
AagrBONN_evm.TU.Sc2ySwM_117.410 Anthoceros agrestis HOM05D000880 ORTHO05D007053 1.2e-52 210.7 277 43.0
Pp3c14_20420 Physcomitrium patens HOM05D000880 ORTHO05D007053 2.1e-52 209.9 274 43.4
TAR365G0888 Trochodendron aralioides HOM05D000880 ORTHO05D007053 1.1e-40 171.0 138 64.5
Dinv02562 Davidia involucrata HOM05D000880 ORTHO05D007053 2.0e-34 150.2 125 60.8
Nn3g21501 Nelumbo nucifera HOM05D000880 ORTHO05D007053 1.7e-33 147.1 141 56.0
CBR_g8603 Chara braunii HOM05D000880 ORTHO05D007053 4.1e-32 142.5 279 33.0
AUR62039138 Chenopodium quinoa HOM05D000880 ORTHO05D043363 3.3e-29 132.9 101 68.3
MCO03G526 Micromonas commoda HOM05D000880 ORTHO05D007053 2.1e-15 87.0 201 31.8
Lsat_1_v5_gn_9_5381 Lactuca sativa HOM05D000880 ORTHO05D007053 3.5e-15 86.3 85 54.1
Actinidia21204 Actinidia chinensis HOM05D000880 ORTHO05D007053 1.7e-14 84.0 77 63.6
Cre01.g019150 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D007053 8.7e-14 81.6 199 28.1
SEGI_14411 Sequoiadendron giganteum HOM05D000807 ORTHO05D000662 1.6e-07 60.8 60 53.3
CiPaw.08G094700 Carya illinoinensis HOM05D000880 ORTHO05D007053 3.5e-07 59.7 43 65.1


User provided reference genes

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