Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 4.5e-77 291.2 147 100.0
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 1.6e-74 282.7 147 98.0
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 7.0e-38 161.0 157 61.1
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 9.1e-38 160.6 159 61.0
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 9.1e-38 160.6 157 61.1
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 9.1e-38 160.6 157 61.1
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 9.1e-38 160.6 157 61.1
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 9.1e-38 160.6 157 61.1
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 9.1e-38 160.6 157 61.1
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.2e-37 160.2 157 61.1
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 1.2e-37 160.2 157 60.5
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 1.6e-37 159.8 156 62.2
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 2.0e-37 159.5 157 60.5
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 2.0e-37 159.5 157 60.5
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 2.0e-37 159.5 157 60.5
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.0e-37 159.5 157 60.5
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 2.0e-37 159.5 157 60.5
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 2.0e-37 159.5 157 60.5
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 2.0e-37 159.5 157 60.5
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.6e-37 159.1 157 60.5
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.5e-37 158.7 164 58.5
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 3.5e-37 158.7 157 60.5
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 4.5e-37 158.3 157 60.5
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 4.5e-37 158.3 157 60.5
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 4.5e-37 158.3 157 60.5
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 4.5e-37 158.3 157 59.9
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 5.9e-37 157.9 157 59.9
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 5.9e-37 157.9 157 59.2
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 5.9e-37 157.9 157 59.2
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 5.9e-37 157.9 157 59.9
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 5.9e-37 157.9 157 59.2
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 5.9e-37 157.9 157 59.9
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 5.9e-37 157.9 157 59.9
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 5.9e-37 157.9 157 59.9
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 7.7e-37 157.5 157 60.5
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 7.7e-37 157.5 157 59.9
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.0e-36 157.1 157 59.9
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.0e-36 157.1 157 59.2
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.0e-36 157.1 157 59.2
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.0e-36 157.1 157 59.9
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.0e-36 157.1 157 59.9
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.0e-36 157.1 157 59.9
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.0e-36 157.1 157 59.9
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 1.3e-36 156.8 157 59.2
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.3e-36 156.8 157 59.2
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.3e-36 156.8 157 59.2
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 1.3e-36 156.8 157 59.2
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 1.3e-36 156.8 157 59.2
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 1.3e-36 156.8 157 59.2
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 1.3e-36 156.8 157 59.2
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.7e-36 156.4 156 59.6
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.7e-36 156.4 157 59.2
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.7e-36 156.4 157 59.2
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 1.7e-36 156.4 157 59.2
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 1.7e-36 156.4 157 58.6
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 1.7e-36 156.4 157 58.6
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 2.2e-36 156.0 157 59.2
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 2.2e-36 156.0 157 59.2
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 2.9e-36 155.6 159 58.5
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 2.9e-36 155.6 157 58.6
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.9e-36 155.6 157 59.2
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.9e-36 155.6 157 59.2
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 3.8e-36 155.2 157 59.2
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 3.8e-36 155.2 157 59.2
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 3.8e-36 155.2 157 58.6
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 3.8e-36 155.2 157 58.6
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 3.8e-36 155.2 157 59.9
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 3.8e-36 155.2 160 58.1
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 5.0e-36 154.8 157 58.6
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 5.0e-36 154.8 156 59.6
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 5.0e-36 154.8 157 58.6
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 5.0e-36 154.8 157 58.0
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 5.0e-36 154.8 157 58.6
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 6.5e-36 154.5 157 58.0
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 6.5e-36 154.5 157 58.6
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 6.5e-36 154.5 157 59.2
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 6.5e-36 154.5 157 59.2
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 6.5e-36 154.5 157 59.2
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 8.5e-36 154.1 157 58.6
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 8.5e-36 154.1 157 58.0
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 8.5e-36 154.1 157 58.0
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 8.5e-36 154.1 157 58.0
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 8.5e-36 154.1 157 59.2
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 1.1e-35 153.7 157 58.6
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.5e-35 153.3 157 59.2
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 1.5e-35 153.3 157 58.0
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 1.5e-35 153.3 157 58.0
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.5e-35 153.3 157 58.0
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.5e-35 153.3 157 58.0
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 1.5e-35 153.3 157 58.6
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 1.5e-35 153.3 157 58.6
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 1.9e-35 152.9 157 57.3
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 1.9e-35 152.9 157 58.0
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 2.5e-35 152.5 157 58.0
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 2.5e-35 152.5 157 58.0
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 2.5e-35 152.5 157 57.3
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.5e-35 152.5 157 58.6
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 3.2e-35 152.1 156 58.3
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 3.2e-35 152.1 157 58.6
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 3.2e-35 152.1 157 58.6
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 3.2e-35 152.1 157 58.6
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 3.2e-35 152.1 157 58.6
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 3.2e-35 152.1 157 57.3
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 3.2e-35 152.1 157 59.2
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 4.2e-35 151.8 157 58.0
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 7.2e-35 151.0 157 58.0
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 9.4e-35 150.6 155 57.4
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 9.4e-35 150.6 157 58.0
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 9.4e-35 150.6 157 58.0
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 9.4e-35 150.6 157 57.3
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 9.4e-35 150.6 156 57.1
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 1.2e-34 150.2 157 56.7
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 1.6e-34 149.8 157 57.3
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 1.6e-34 149.8 157 57.3
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.6e-34 149.8 165 55.2
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.6e-34 149.8 156 58.3
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.1e-34 149.4 156 57.7
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 2.3e-33 146.0 157 56.7
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 3.0e-33 145.6 157 56.1
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 4.0e-33 145.2 156 55.1
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 5.2e-33 144.8 155 56.1
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 1.2e-32 143.7 157 54.8
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 1.7e-31 139.8 156 54.5
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 3.7e-31 138.7 182 50.0
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 8.2e-31 137.5 156 53.8
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 3.1e-30 135.6 116 64.7
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 3.1e-30 135.6 132 59.1
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 1.0e-28 130.6 156 50.6
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 2.9e-28 129.0 156 51.3
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.8e-28 128.6 141 58.2
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 3.2e-27 125.6 67 91.0
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 5.5e-27 124.8 67 91.0
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 9.4e-27 124.0 67 89.6
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 2.7e-26 122.5 67 88.1
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 2.3e-20 102.8 156 42.3
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.9e-20 102.4 129 51.9
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 5.0e-20 101.7 122 52.5
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 2.5e-19 99.4 146 41.1
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 6.8e-17 91.3 49 87.8
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 1.6e-10 70.1 114 45.6
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 7.5e-08 61.2 160 28.8
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.3e-07 60.5 50 72.0
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 3.2e-06 55.8 33 75.8
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 5.4e-06 55.1 50 66.0


User provided reference genes

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