Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 1.1e-156 556.6 284 100.0
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.4e-90 337.0 277 65.0
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 5.2e-90 335.1 277 64.3
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 3.9e-85 318.9 277 63.2
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 1.2e-81 307.4 287 59.6
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 2.4e-79 299.7 265 61.1
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 2.7e-78 296.2 285 57.5
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 4.6e-78 295.4 274 60.2
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 1.7e-77 293.5 277 59.9
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 3.9e-77 292.4 276 59.8
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 1.1e-76 290.8 281 58.0
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 4.3e-76 288.9 277 56.0
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 3.6e-75 285.8 280 56.8
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 4.7e-75 285.4 265 59.2
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 1.1e-74 284.3 302 56.0
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.4e-74 283.9 269 59.9
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 3.1e-74 282.7 268 59.7
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 3.1e-74 282.7 265 59.6
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 6.8e-74 281.6 269 59.1
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 1.2e-73 280.8 285 54.7
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 1.2e-73 280.8 277 57.8
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 2.0e-73 280.0 276 56.5
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 3.7e-72 275.8 199 68.3
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 1.2e-70 270.8 284 56.3
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 2.7e-70 269.6 284 55.3
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 4.6e-70 268.9 272 53.7
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 7.8e-70 268.1 268 57.1
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 3.9e-69 265.8 285 54.7
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 1.1e-68 264.2 275 54.2
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 1.5e-68 263.8 270 55.6
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 1.9e-68 263.5 365 45.5
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 2.5e-68 263.1 283 52.3
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 3.6e-67 259.2 281 53.7
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 6.2e-67 258.5 283 52.7
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 1.4e-66 257.3 283 52.7
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 3.1e-66 256.1 273 54.9
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 8.9e-66 254.6 281 51.6
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 8.9e-66 254.6 268 55.2
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 4.4e-65 252.3 288 52.8
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 1.3e-64 250.8 267 53.6
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 1.3e-64 250.8 272 53.3
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 2.2e-64 250.0 274 52.9
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 2.2e-64 250.0 267 53.6
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 4.9e-64 248.8 278 54.3
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 4.9e-64 248.8 271 53.5
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 4.2e-63 245.7 269 49.4
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 5.4e-63 245.4 268 51.1
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 9.3e-63 244.6 269 49.4
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 1.2e-62 244.2 290 49.7
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 2.1e-62 243.4 278 52.5
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 2.1e-62 243.4 277 49.1
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 7.8e-62 241.5 276 53.6
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 3.0e-61 239.6 267 51.3
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 6.6e-61 238.4 278 52.5
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 8.7e-61 238.0 262 54.2
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 1.5e-60 237.3 266 50.0
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 1.5e-60 237.3 234 56.8
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 2.5e-60 236.5 265 53.2
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 3.3e-60 236.1 266 50.0
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 4.3e-60 235.7 272 51.8
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.1e-59 233.4 230 54.8
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 4.8e-59 232.3 271 51.3
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 6.2e-59 231.9 279 50.9
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 8.1e-59 231.5 266 47.7
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 1.1e-58 231.1 285 48.1
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 4.0e-58 229.2 263 51.3
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 9.0e-58 228.0 267 48.7
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 1.5e-57 227.3 226 57.1
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.5e-57 227.3 279 50.2
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 2.0e-57 226.9 262 50.0
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 7.6e-57 224.9 277 47.3
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 2.2e-56 223.4 278 47.8
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 2.2e-56 223.4 274 49.3
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 2.9e-56 223.0 268 49.6
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 4.9e-56 222.2 248 51.2
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 8.4e-56 221.5 250 53.6
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.4e-55 220.7 262 50.0
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 2.4e-55 219.9 206 55.3
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 1.2e-54 217.6 237 52.3
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 1.6e-54 217.2 261 48.3
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 3.9e-53 212.6 272 47.1
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 2.5e-52 209.9 261 46.0
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 3.3e-52 209.5 272 46.7
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 3.6e-51 206.1 261 43.3
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 1.4e-50 204.1 232 50.0
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 9.0e-50 201.4 269 46.5
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 9.0e-50 201.4 269 46.1
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 1.5e-49 200.7 272 44.9
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 2.6e-49 199.9 270 44.1
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 2.6e-49 199.9 278 45.3
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 9.9e-49 198.0 272 43.8
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 4.9e-48 195.7 283 43.1
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.4e-47 194.1 263 42.6
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 2.4e-47 193.4 276 42.4
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 3.2e-47 193.0 301 41.9
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 4.2e-47 192.6 192 53.6
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 5.5e-47 192.2 271 42.8
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 6.0e-46 188.7 250 47.2
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 6.7e-45 185.3 266 42.1
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 8.7e-45 184.9 189 54.5
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 7.4e-44 181.8 229 49.8
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 1.3e-43 181.0 267 41.9
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.3e-43 181.0 137 62.8
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 3.1e-42 176.4 284 41.5
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 1.3e-40 171.0 134 65.7
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 4.8e-35 152.5 275 36.7
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.4e-34 151.0 294 40.5
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 5.3e-34 149.1 264 40.9
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 1.7e-32 144.1 195 42.1
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.1e-31 141.4 193 47.7
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 3.1e-26 123.2 164 47.6
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 4.5e-25 119.4 133 48.1
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 1.2e-22 111.3 263 33.1
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 1.6e-22 110.9 274 33.9
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 2.3e-21 107.1 227 33.9
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 5.7e-20 102.4 78 61.5
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 7.4e-20 102.1 96 62.5
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 3.7e-19 99.8 196 31.6
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.1e-18 98.2 78 60.3
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 2.4e-18 97.1 189 32.8
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 2.1e-14 84.0 71 60.6
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 4.8e-11 72.8 189 30.2
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 7.2e-07 58.9 35 80.0
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 7.2e-07 58.9 35 80.0
TAR636G2555 Trochodendron aralioides HOM05D005876 ORTHO05D007326 9.4e-07 58.5 122 38.5
COL.COLO4_27076 Corchorus olitorius HOM05D005876 ORTHO05D007326 6.1e-06 55.8 93 43.0


User provided reference genes

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