Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 0.0e+00 1083.9 540 100.0
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 1.8e-272 942.2 530 87.9
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 1.1e-271 939.5 532 87.6
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 5.7e-271 937.2 530 88.7
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 7.4e-271 936.8 530 88.7
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 1.7e-270 935.6 513 90.1
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.2e-270 935.3 527 87.5
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 2.8e-270 934.9 521 88.7
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 4.8e-270 934.1 528 88.6
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 1.2e-268 929.5 513 89.3
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 2.6e-268 928.3 527 87.3
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 4.5e-268 927.5 526 87.8
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 4.5e-268 927.5 511 88.5
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 5.9e-268 927.2 511 89.4
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 1.3e-267 926.0 509 90.4
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 2.2e-267 925.2 527 86.9
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 5.0e-267 924.1 566 82.3
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 6.5e-267 923.7 509 89.6
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 8.5e-267 923.3 513 88.1
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 8.5e-267 923.3 509 89.8
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 1.9e-266 922.2 511 89.2
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 2.5e-266 921.8 509 90.2
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 3.2e-266 921.4 513 89.5
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 5.5e-266 920.6 515 88.3
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 7.2e-266 920.2 509 89.4
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 9.4e-266 919.8 524 87.0
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 1.6e-265 919.1 530 86.2
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 1.6e-265 919.1 511 88.8
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 1.6e-265 919.1 513 87.9
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 2.1e-265 918.7 508 89.0
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 3.6e-265 917.9 524 87.2
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 1.8e-264 915.6 530 86.2
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 4.0e-264 914.4 541 84.7
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 4.0e-264 914.4 513 87.5
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 5.2e-264 914.1 513 87.7
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 8.8e-264 913.3 501 89.6
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 4.4e-263 911.0 509 89.0
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 7.5e-263 910.2 524 86.1
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 1.3e-262 909.4 503 88.9
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 1.7e-262 909.1 526 85.0
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 1.7e-262 909.1 530 84.9
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 8.2e-262 906.7 513 87.1
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 1.1e-261 906.4 524 85.7
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 1.8e-261 905.6 530 84.9
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 2.4e-261 905.2 512 86.5
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 2.4e-261 905.2 530 85.3
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 2.4e-261 905.2 513 88.1
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 5.3e-261 904.0 526 85.6
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 5.3e-261 904.0 530 84.7
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 5.3e-261 904.0 530 83.8
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 7.0e-261 903.7 513 87.3
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 4.5e-260 901.0 513 86.4
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 7.7e-260 900.2 511 86.3
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 1.7e-259 899.0 513 86.0
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 2.9e-259 898.3 509 86.6
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 3.8e-259 897.9 524 85.3
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 6.5e-259 897.1 562 81.1
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 1.9e-258 895.6 511 86.7
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 2.5e-258 895.2 513 85.6
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 9.4e-258 893.3 513 85.4
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 1.2e-257 892.9 513 85.8
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 3.6e-257 891.3 532 84.2
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 6.1e-257 890.6 513 85.4
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 8.0e-257 890.2 562 80.8
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 1.4e-256 889.4 548 82.5
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 2.3e-256 888.6 513 85.4
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 3.0e-256 888.3 527 83.5
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 3.0e-256 888.3 530 84.7
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 4.0e-256 887.9 513 85.2
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 5.2e-256 887.5 562 80.4
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 1.5e-255 885.9 512 85.4
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 2.6e-255 885.2 513 85.2
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 2.6e-255 885.2 513 85.2
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 7.5e-255 883.6 527 83.1
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 8.3e-254 880.2 574 77.9
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 8.3e-254 880.2 574 77.9
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 3.1e-253 878.2 531 82.7
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 4.5e-252 874.4 513 84.4
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 7.7e-252 873.6 517 83.9
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 1.3e-251 872.8 511 83.0
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 8.5e-251 870.2 603 74.1
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 6.1e-249 864.0 533 80.7
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 1.4e-248 862.8 515 84.5
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 3.4e-247 858.2 551 79.5
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 5.9e-244 847.4 530 80.9
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 2.3e-243 845.5 511 81.4
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.7e-238 829.3 524 79.8
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 6.0e-228 794.3 530 75.8
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 3.0e-227 792.0 468 84.6
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 3.3e-226 788.5 588 70.7
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 6.2e-225 784.3 508 76.0
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 6.4e-222 774.2 502 74.5
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 1.1e-216 756.9 503 74.4
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 2.4e-216 755.7 504 76.8
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 2.3e-203 712.6 482 72.4
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 4.9e-198 694.9 365 93.2
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.4e-197 693.3 370 92.4
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.7e-196 689.1 365 92.6
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 3.5e-196 688.7 504 68.5
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 1.0e-187 660.6 398 82.7
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 8.2e-185 651.0 520 63.5
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 1.1e-181 640.6 352 89.2
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 3.5e-180 635.6 394 79.7
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 3.1e-176 622.5 516 62.0
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 2.0e-175 619.8 401 78.1
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 6.9e-168 594.7 308 92.9
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 3.8e-166 589.0 509 63.1
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 2.0e-143 513.5 447 63.1
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 2.4e-128 463.4 266 84.6
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 1.4e-123 447.6 267 84.6
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 1.2e-108 397.9 369 61.2
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 6.2e-108 395.6 372 58.6
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 9.2e-96 355.1 334 58.4
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 1.6e-95 354.4 465 41.7
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 3.0e-94 350.1 514 38.3
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 1.2e-90 338.2 218 79.8
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 3.6e-84 316.6 522 38.7
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 8.1e-84 315.5 161 91.3
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 2.2e-81 307.4 199 79.9
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 9.3e-72 275.4 161 83.2
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 1.0e-70 271.9 335 46.3
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 3.4e-58 230.3 162 68.5
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 2.9e-57 227.3 204 57.8
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 1.4e-48 198.4 114 87.7
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 1.4e-35 155.2 112 69.6
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 5.9e-34 149.8 93 78.5
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 4.2e-32 143.7 139 59.0
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 5.7e-29 133.3 71 80.3
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 7.5e-29 132.9 93 76.3
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 6.3e-28 129.8 76 82.9
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 2.9e-25 120.9 78 76.9
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.0e-17 95.9 146 43.8
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.7e-17 95.1 64 71.9
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 8.6e-17 92.8 47 83.0
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.9e-16 91.7 60 71.7
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 2.1e-15 88.2 48 81.2
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 4.7e-15 87.0 77 58.4


User provided reference genes

Program Settings