Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 1.3e-120 436.4 226 100.0
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 3.1e-69 265.8 228 63.2
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 6.9e-69 264.6 235 63.4
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 1.3e-67 260.4 231 62.3
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 3.9e-64 248.8 228 60.5
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 1.1e-63 247.3 231 59.7
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.6e-57 226.9 236 55.9
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 7.9e-57 224.6 229 58.5
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 1.5e-55 220.3 261 49.4
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 3.3e-55 219.2 234 55.1
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 3.1e-53 212.6 228 56.1
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 6.9e-53 211.5 229 56.3
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.5e-52 210.3 229 54.1
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 2.0e-52 209.9 229 56.3
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 5.8e-52 208.4 258 51.2
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 2.9e-51 206.1 229 54.1
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 5.0e-51 205.3 215 56.7
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 5.0e-51 205.3 234 55.1
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 6.5e-51 204.9 231 51.9
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 6.5e-51 204.9 229 54.1
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 8.4e-51 204.5 226 55.8
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 2.1e-49 199.9 232 52.6
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 3.5e-49 199.1 231 52.8
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 6.1e-49 198.4 228 53.1
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 7.9e-49 198.0 228 53.1
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 1.3e-48 197.2 239 52.7
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 3.0e-48 196.1 231 51.9
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 3.9e-48 195.7 230 53.0
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 8.7e-48 194.5 229 52.4
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 8.7e-48 194.5 225 51.1
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.1e-47 194.1 230 53.9
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 1.1e-47 194.1 252 49.6
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 1.5e-47 193.7 230 53.0
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 2.5e-47 193.0 228 50.4
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 3.3e-47 192.6 244 52.0
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 1.6e-46 190.3 227 50.7
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 3.7e-46 189.1 225 51.6
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 3.7e-46 189.1 230 53.5
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 4.8e-46 188.7 236 49.2
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 4.8e-46 188.7 228 48.7
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 6.3e-46 188.3 231 51.5
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 6.3e-46 188.3 282 45.7
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 8.2e-46 188.0 240 50.8
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 1.1e-45 187.6 227 52.9
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 1.1e-45 187.6 228 51.8
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 1.1e-45 187.6 231 51.5
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 1.4e-45 187.2 233 50.2
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 3.1e-45 186.0 230 50.9
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.9e-45 184.9 137 73.7
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 1.5e-44 183.7 230 52.2
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 2.0e-44 183.3 246 50.8
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 2.2e-43 179.9 238 50.0
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.4e-42 177.2 202 52.5
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 5.5e-42 175.3 223 48.9
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 1.6e-41 173.7 222 45.5
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.6e-41 172.2 239 46.4
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 1.8e-40 170.2 228 46.9
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 1.8e-40 170.2 226 50.0
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 2.3e-40 169.9 224 47.3
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.7e-40 168.3 240 45.4
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.0e-39 166.8 228 47.8
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 2.5e-39 166.4 248 45.6
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 4.3e-39 165.6 221 47.1
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 5.7e-39 165.2 226 46.0
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 9.7e-39 164.5 225 47.1
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 2.8e-38 162.9 227 46.7
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.8e-38 162.9 195 49.7
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 6.3e-38 161.8 225 46.2
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 6.3e-38 161.8 227 47.1
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.3e-38 161.8 227 48.0
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 1.4e-37 160.6 248 44.4
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 1.8e-37 160.2 201 49.8
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.1e-37 159.5 131 64.1
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 4.1e-37 159.1 223 45.7
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.2e-36 157.5 223 45.7
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 2.6e-36 156.4 199 48.2
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 1.9e-34 150.2 260 39.6
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 9.4e-34 147.9 234 39.7
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 7.9e-33 144.8 224 42.0
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 7.9e-33 144.8 211 43.1
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 1.4e-32 144.1 211 43.6
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 3.9e-32 142.5 227 43.2
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 6.7e-32 141.7 211 43.6
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 8.8e-32 141.4 212 42.0
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 1.5e-31 140.6 259 40.2
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 2.6e-31 139.8 281 36.7
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 3.3e-31 139.4 198 46.0
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 4.4e-31 139.0 219 43.8
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 2.8e-30 136.3 211 42.7
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 1.1e-29 134.4 211 41.7
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 1.1e-29 134.4 211 41.7
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 1.1e-29 134.4 211 40.8
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 1.4e-29 134.0 226 42.0
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.8e-29 133.7 226 41.2
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 3.1e-29 132.9 211 41.2
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 3.1e-29 132.9 211 41.2
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.1e-29 132.9 176 47.2
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 4.1e-29 132.5 226 40.7
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.7e-27 127.1 235 41.7
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 2.2e-27 126.7 211 39.3
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 2.2e-27 126.7 211 41.2
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 1.9e-26 123.6 229 39.3
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 2.5e-26 123.2 266 37.2
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 2.7e-25 119.8 280 33.2
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.7e-22 109.4 94 62.8
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.7e-22 109.4 94 62.8
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 2.4e-21 106.7 232 36.2
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 3.1e-21 106.3 65 73.8
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 4.1e-21 105.9 63 76.2
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.2e-20 104.4 162 45.7
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 2.7e-20 103.2 137 46.0
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 7.7e-20 101.7 70 74.3
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.5e-19 98.6 183 41.0
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 2.1e-17 93.6 119 47.9
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 1.4e-13 80.9 188 36.7
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 9.1e-13 78.2 82 51.2
CSS0035544 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.5e-12 76.3 83 53.0
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 1.7e-11 73.9 128 42.2
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 2.5e-10 70.1 127 40.2
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.4e-08 64.3 60 51.7
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 5.2e-08 62.4 161 32.3
CSS0027816 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.0e-07 60.5 78 47.4
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 4.4e-07 59.3 168 30.4
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 3.7e-06 56.2 92 46.7


User provided reference genes

Program Settings