Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 9.6e-200 699.9 339 100.0
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 1.1e-155 553.5 357 77.6
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 4.8e-151 538.1 358 75.4
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.4e-150 536.6 357 75.1
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 2.4e-150 535.8 354 76.8
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 4.5e-149 531.6 357 73.4
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 1.3e-148 530.0 358 73.2
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 1.7e-148 529.6 356 72.8
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 2.9e-148 528.9 357 74.5
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 3.8e-148 528.5 356 73.6
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 1.9e-147 526.2 356 72.2
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 2.5e-147 525.8 357 73.7
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 4.2e-147 525.0 358 72.6
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 1.2e-146 523.5 354 74.3
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 2.1e-146 522.7 357 71.7
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 1.0e-145 520.4 354 74.3
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 1.8e-145 519.6 355 71.5
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 2.3e-145 519.2 356 73.9
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 6.8e-145 517.7 358 72.3
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 2.0e-144 516.2 357 72.3
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 2.8e-143 512.3 353 70.5
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 6.3e-143 511.1 384 69.8
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 8.3e-143 510.8 353 70.8
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.1e-142 510.4 356 71.3
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 3.1e-142 508.8 355 71.5
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 4.1e-142 508.4 365 69.0
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 5.4e-142 508.1 357 71.4
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.2e-141 506.9 358 70.7
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 2.0e-141 506.1 357 70.6
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 1.0e-140 503.8 360 69.7
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.0e-140 503.8 357 70.3
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 1.0e-140 503.8 353 71.1
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 1.3e-140 503.4 354 71.2
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 1.7e-140 503.1 358 70.9
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 3.8e-140 501.9 356 70.2
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 3.8e-140 501.9 356 70.5
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 6.5e-140 501.1 357 70.0
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 6.5e-140 501.1 353 70.3
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 3.3e-139 498.8 357 69.5
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 3.3e-139 498.8 357 69.5
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 1.2e-138 496.9 352 70.5
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 1.6e-138 496.5 358 69.6
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 4.7e-138 495.0 356 68.3
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 1.4e-137 493.4 366 68.3
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 3.0e-137 492.3 356 68.0
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 4.0e-137 491.9 361 67.9
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 5.2e-137 491.5 383 65.8
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 6.8e-137 491.1 349 69.6
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 6.8e-137 491.1 349 69.6
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 6.8e-137 491.1 349 69.6
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 8.9e-137 490.7 356 68.8
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 1.2e-136 490.3 349 69.3
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 1.2e-136 490.3 357 69.2
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.5e-136 490.0 354 68.9
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 3.4e-136 488.8 349 69.3
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 3.4e-136 488.8 349 69.3
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 4.4e-136 488.4 326 75.2
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 4.4e-136 488.4 357 68.1
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 5.7e-136 488.0 349 69.9
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 7.5e-136 487.6 352 68.2
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 6.3e-135 484.6 348 69.8
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 6.3e-135 484.6 360 68.6
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 6.3e-135 484.6 349 68.8
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 8.3e-135 484.2 348 69.8
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 8.3e-135 484.2 357 67.5
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.1e-134 483.8 348 69.8
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 1.1e-134 483.8 349 68.8
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 1.1e-134 483.8 349 69.1
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 1.1e-134 483.8 349 68.8
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 1.1e-134 483.8 349 68.8
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.1e-134 483.8 392 63.8
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 1.2e-133 480.3 349 68.2
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 5.9e-133 478.0 365 66.8
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 1.0e-132 477.2 351 68.4
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 2.3e-132 476.1 357 67.2
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 3.8e-132 475.3 346 66.8
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 6.6e-132 474.6 319 72.7
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 8.6e-132 474.2 338 70.4
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 3.3e-131 472.2 379 63.6
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 4.3e-131 471.9 352 64.5
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 5.6e-131 471.5 353 67.7
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 1.2e-130 470.3 347 68.0
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.8e-129 466.5 346 67.1
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 3.0e-129 465.7 336 69.6
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 6.8e-129 464.5 353 63.2
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 8.9e-129 464.2 353 66.6
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.2e-128 463.8 353 66.0
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 2.0e-128 463.0 353 66.0
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 9.8e-128 460.7 353 66.0
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 9.8e-128 460.7 353 66.0
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 1.3e-127 460.3 361 64.8
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 2.2e-127 459.5 353 66.0
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 4.9e-127 458.4 353 65.4
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 6.4e-127 458.0 337 69.1
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 4.1e-126 455.3 353 64.9
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 1.2e-125 453.8 371 62.8
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 2.7e-125 452.6 353 64.3
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 7.8e-125 451.1 319 71.5
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 1.7e-124 449.9 334 67.4
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 8.6e-124 447.6 353 63.5
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 8.6e-124 447.6 353 63.5
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 2.1e-122 443.0 354 64.1
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 4.7e-122 441.8 363 63.4
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.4e-121 440.3 345 64.6
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 1.4e-121 440.3 356 63.5
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 8.9e-121 437.6 346 62.1
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 2.3e-116 422.9 260 79.2
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 5.0e-116 421.8 353 60.6
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 2.8e-114 416.0 332 65.1
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 4.3e-107 392.1 358 54.7
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 4.0e-105 385.6 260 71.9
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.2e-101 374.0 370 49.7
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.2e-101 374.0 349 52.7
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 2.1e-101 373.2 370 49.5
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.7e-101 372.9 359 51.5
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.5e-99 367.1 343 54.8
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 7.6e-96 354.8 236 73.3
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 1.3e-95 354.0 231 74.0
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 7.6e-88 328.2 196 80.1
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 4.2e-86 322.4 232 65.9
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 5.4e-86 322.0 306 56.5
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 4.2e-78 295.8 281 54.4
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 2.1e-77 293.5 209 69.4
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 1.3e-76 290.8 322 49.7
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.9e-75 287.0 215 67.0
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 7.4e-67 258.5 219 63.0
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 1.4e-65 254.2 517 32.7
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 2.4e-57 226.9 152 75.7
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.2e-53 214.5 116 87.1
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 2.1e-53 213.8 146 71.9
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.7e-53 213.4 116 87.9
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 2.1e-45 187.2 317 36.0
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 7.4e-43 178.7 250 43.6
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.7e-39 167.5 139 59.7
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 2.7e-24 117.1 287 29.3
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 5.9e-24 115.9 153 48.4
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 4.2e-22 109.8 110 52.7
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 1.8e-20 104.4 59 78.0
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 9.8e-19 98.6 67 68.7
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 4.9e-18 96.3 267 25.8
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 3.9e-15 86.7 96 47.9
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 5.0e-15 86.3 59 62.7
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 6.6e-15 85.9 55 67.3
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.2e-11 75.1 57 63.2
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 7.5e-11 72.4 48 70.8
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 2.0e-08 64.3 37 75.7


User provided reference genes

Program Settings