Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A350T60 Lonicera japonica HOM05D006866 ORTHO05D008689 3.1e-201 705.7 601 100.0
ECA232G0121 Erigeron canadensis HOM05D006866 ORTHO05D008689 6.1e-72 276.2 249 57.8
Lalb_Chr02g0143291 Lupinus albus HOM05D006866 ORTHO05D008689 3.8e-66 256.9 275 50.5
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 5.2e-63 246.5 260 50.8
THA.LOC104814359 Tarenaya hassleriana HOM05D006866 ORTHO05D008689 1.1e-60 238.8 249 51.8
HanXRQChr09g0258331 Helianthus annuus HOM05D006866 ORTHO05D008689 1.6e-59 235.0 232 53.9
Thhalv10017758m.g Eutrema salsugineum HOM05D006866 ORTHO05D008689 2.0e-59 234.6 307 45.0
A05p10610 Brassica napus HOM05D006866 ORTHO05D008689 1.3e-58 231.9 315 45.1
BcaB02g09476 Brassica carinata HOM05D006866 ORTHO05D008689 5.0e-58 229.9 314 44.3
Sp4g17360 Schrenkiella parvula HOM05D006866 ORTHO05D008689 6.5e-58 229.6 267 46.8
Aa31LG9G16090 Aethionema arabicum HOM05D006866 ORTHO05D008689 1.5e-57 228.4 274 47.1
C04p13710 Brassica napus HOM05D006866 ORTHO05D008689 1.9e-57 228.0 313 44.4
BraA05t20001Z Brassica rapa HOM05D006866 ORTHO05D008689 3.2e-57 227.3 323 44.0
CSS0001165 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 2.1e-56 224.6 206 57.3
Phvul.007G021100 Phaseolus vulgaris HOM05D006866 ORTHO05D008689 2.1e-56 224.6 223 53.4
AUR62006935 Chenopodium quinoa HOM05D006866 ORTHO05D008689 2.7e-56 224.2 242 48.3
BolC4t22960H Brassica oleracea HOM05D006866 ORTHO05D008689 3.6e-56 223.8 322 43.5
AL4G31140 Arabidopsis lyrata HOM05D006866 ORTHO05D008689 8.0e-56 222.6 274 45.3
Actinidia22399 Actinidia chinensis HOM05D006866 ORTHO05D008689 5.2e-55 219.9 204 55.9
Carub.0004s1681 Capsella rubella HOM05D006866 ORTHO05D008689 1.2e-54 218.8 286 44.8
CSS0037136 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 4.4e-54 216.9 208 55.8
Haze_06061 Corylus avellana HOM05D006866 ORTHO05D008689 5.7e-54 216.5 236 49.2
Sabra12G0093100 Salix brachista HOM05D006866 ORTHO05D008689 5.7e-54 216.5 310 42.6
AT2G35130 Arabidopsis thaliana HOM05D006866 ORTHO05D008689 7.5e-54 216.1 316 40.8
Sabra12G0093000 Salix brachista HOM05D000009 ORTHO05D000008 2.8e-53 214.2 211 51.7
Oeu060351.1 Olea europaea HOM05D006866 ORTHO05D008689 3.7e-53 213.8 199 55.8
vmacro03523 Vaccinium macrocarpon HOM05D006866 ORTHO05D008689 2.4e-52 211.1 223 50.2
Gorai.011G048600 Gossypium raimondii HOM05D006866 ORTHO05D008689 3.1e-52 210.7 199 54.8
Ca_25672_v3 Cicer arietinum L. HOM05D006866 ORTHO05D008689 7.0e-52 209.5 239 46.9
Solyc02g068760.4 Solanum lycopersicum HOM05D006866 ORTHO05D008689 1.2e-51 208.8 205 51.7
CARHR129270 Cardamine hirsuta HOM05D006866 ORTHO05D008689 2.0e-51 208.0 288 42.7
Duzib160G0228 Durio zibethinus HOM05D006866 ORTHO05D008689 4.5e-51 206.8 207 51.7
DCAR_001319 Daucus carota HOM05D006866 ORTHO05D008689 5.9e-51 206.5 206 53.9
GSVIVG01012065001 Vitis vinifera HOM05D006866 ORTHO05D008689 7.7e-51 206.1 202 53.5
Sopen02g017930 Solanum pennellii HOM05D006866 ORTHO05D008689 1.0e-50 205.7 204 51.5
Dinv01379 Davidia involucrata HOM05D006866 ORTHO05D008689 1.3e-50 205.3 186 55.9
PGSC0003DMG400010422 Solanum tuberosum HOM05D006866 ORTHO05D008689 2.9e-50 204.1 204 51.5
Potri.012G123600 Populus trichocarpa HOM05D006866 ORTHO05D008689 3.8e-50 203.8 208 52.4
CAN.G149.30 Capsicum annuum HOM05D006866 ORTHO05D008689 5.0e-50 203.4 204 50.0
Sabra12G0093800 Salix brachista HOM05D006866 ORTHO05D008689 8.5e-50 202.6 209 52.2
COL.COLO4_30996 Corchorus olitorius HOM05D006866 ORTHO05D008689 1.5e-49 201.8 201 52.2
Thecc.06G143300 Theobroma cacao HOM05D006866 ORTHO05D008689 4.2e-49 200.3 208 51.9
Nitab4.5_0001288g0160 Nicotiana tabacum HOM05D006866 ORTHO05D008689 1.6e-48 198.4 211 49.3
Gohir.A10G044500 Gossypium hirsutum HOM05D006866 ORTHO05D008689 2.1e-48 198.0 179 57.0
Gohir.D10G045700 Gossypium hirsutum HOM05D006866 ORTHO05D008689 3.6e-48 197.2 179 56.4
Peaxi162Scf00149g00318 Petunia axillaris HOM05D006866 ORTHO05D008689 8.0e-48 196.1 207 49.8
Cfa000706 Carpinus fangiana HOM05D006866 ORTHO05D008689 1.2e-46 192.2 205 50.7
CiPaw.10G064300 Carya illinoinensis HOM05D006866 ORTHO05D008689 1.5e-46 191.8 204 50.5
Cc09_g06040 Coffea canephora HOM05D006866 ORTHO05D008689 1.5e-46 191.8 205 49.3
EL10Ac8g19312 Beta vulgaris HOM05D006866 ORTHO05D008689 2.0e-46 191.4 299 41.5
TAR626G0654 Trochodendron aralioides HOM05D006866 ORTHO05D008689 7.5e-46 189.5 189 51.9
Nitab4.5_0007533g0010 Nicotiana tabacum HOM05D006866 ORTHO05D008689 1.7e-45 188.3 170 54.7
TWI38G1826 Tripterygium wilfordii HOM05D006866 ORTHO05D008689 2.8e-45 187.6 207 49.8
Nn7g38175 Nelumbo nucifera HOM05D006866 ORTHO05D008689 8.3e-45 186.0 209 46.4
Migut.M01983 Erythranthe guttata HOM05D006866 ORTHO05D008689 3.1e-44 184.1 209 51.7
AUR62000579 Chenopodium quinoa HOM05D006866 ORTHO05D008689 1.6e-43 181.8 203 45.3
Prupe.4G112600 Prunus persica HOM05D006866 ORTHO05D008689 6.6e-42 176.4 206 49.5
Eucgr.D00981 Eucalyptus grandis HOM05D006866 ORTHO05D008689 8.6e-42 176.0 206 50.5
MELO3C021744.2 Cucumis melo HOM05D006866 ORTHO05D008689 1.9e-41 174.9 201 47.8
HanXRQChr10g0279011 Helianthus annuus HOM05D006866 ORTHO05D008689 1.9e-41 174.9 141 59.6
CsaV3_1G046260 Cucumis sativus L. HOM05D006866 ORTHO05D008689 3.3e-41 174.1 201 47.3
CANSAT35G0964 Cannabis sativa HOM05D006866 ORTHO05D008689 5.5e-41 173.3 205 48.3
Glyma.20G109800 Glycine max HOM05D006866 ORTHO05D008689 1.6e-40 171.8 199 46.7
ClCG01G009530 Citrullus lanatus HOM05D006866 ORTHO05D008689 3.6e-40 170.6 202 47.0
Psat6g231320 Pisum sativum HOM05D006866 ORTHO05D008689 3.6e-40 170.6 200 46.5
PGR004G0545 Punica granatum HOM05D006866 ORTHO05D008689 8.0e-40 169.5 180 48.9
RcHm_v2.0_Chr5g0020151 Rosa chinensis HOM05D006866 ORTHO05D008689 1.0e-39 169.1 209 47.8
AUR62006933 Chenopodium quinoa HOM05D006866 ORTHO05D008689 1.4e-39 168.7 207 44.9
FAN21G0631 Fragaria x ananassa HOM05D006866 ORTHO05D008689 1.4e-39 168.7 210 47.6
FvH4_3g12360 Fragaria vesca HOM05D006866 ORTHO05D008689 1.2e-38 165.6 204 48.0
Lj5g0008795 Lotus japonicus HOM05D006866 ORTHO05D008689 1.5e-38 165.2 203 44.8
MD10G1231700 Malus domestica HOM05D006866 ORTHO05D008689 1.5e-38 165.2 195 46.7
TPR.G2424 Trifolium pratense HOM05D006866 ORTHO05D008689 1.5e-38 165.2 199 45.7
Aqoxy1G01457 Aquilegia oxysepala HOM05D006866 ORTHO05D008689 2.0e-38 164.9 207 44.9
QL11p016582 Quercus lobata HOM05D006866 ORTHO05D008689 2.0e-38 164.9 247 39.7
arahy.Tifrunner.gnm1.ann1.X32MFV Arachis hypogaea HOM05D006866 ORTHO05D008689 4.4e-38 163.7 205 48.3
VMungo0720G0148 Vigna mungo HOM05D006866 ORTHO05D008689 5.7e-38 163.3 205 44.4
EL10Ac4g09707 Beta vulgaris HOM05D006866 ORTHO05D008689 2.2e-37 161.4 196 45.9
MBI18_g11481_MAGBIO Magnolia biondii HOM05D006866 ORTHO05D008689 6.3e-37 159.8 211 43.1
Medtr1g112240 Medicago truncatula HOM05D006866 ORTHO05D008689 1.6e-35 155.2 169 50.3
FAN25G0624 Fragaria x ananassa HOM05D006866 ORTHO05D008689 2.0e-35 154.8 203 46.8
TPR.G2448 Trifolium pratense HOM05D006866 ORTHO05D008689 5.9e-35 153.3 230 39.6
PSO675G2302 Papaver somniferum HOM05D006866 ORTHO05D008689 7.8e-35 152.9 177 45.2
Sed0016966 Sechium edule HOM05D006866 ORTHO05D003855 7.8e-35 152.9 186 46.2
PSO541G3299 Papaver somniferum HOM05D006866 ORTHO05D008689 1.0e-34 152.5 197 42.1
Lsat_1_v5_gn_6_52341 Lactuca sativa HOM05D006866 ORTHO05D008689 8.6e-34 149.4 113 63.7
Sabra12G0092900 Salix brachista HOM05D000009 ORTHO05D000008 9.5e-33 146.0 300 34.0
Lsat_1_v5_gn_8_117320 Lactuca sativa HOM05D006866 ORTHO05D008689 1.0e-31 142.5 144 53.5
CDE01G0264 Ceratophyllum demersum HOM05D006866 ORTHO05D008689 4.0e-31 140.6 204 41.2
Cpa.g.sc135.7 Carica papaya HOM05D006866 ORTHO05D008689 2.6e-30 137.9 157 48.4
Zm00001eb233080 Zea mays HOM05D006866 ORTHO05D008689 9.2e-28 129.4 163 44.2
ATR0763G194 Amborella trichopoda HOM05D006866 ORTHO05D008689 1.6e-27 128.6 162 45.7
Os02g0170000 Oryza sativa ssp. japonica HOM05D006866 ORTHO05D008689 1.6e-27 128.6 102 55.9
arahy.Tifrunner.gnm1.ann1.0F554D Arachis hypogaea HOM05D006866 ORTHO05D008689 4.0e-23 114.0 205 38.5
CSS0019706 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 1.5e-22 112.1 108 58.3
Haze_06053 Corylus avellana HOM05D006866 ORTHO05D008689 2.3e-18 98.2 232 34.1
Lsat_1_v5_gn_8_128381 Lactuca sativa HOM05D006866 ORTHO05D008689 2.8e-16 91.3 109 46.8
Lsat_1_v5_gn_3_50301 Lactuca sativa HOM05D006866 ORTHO05D008689 8.1e-16 89.7 56 71.4
CSS0001056 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 5.8e-14 83.6 47 78.7
CSS0048441 Camellia sinensis var. sinensis HOM05D006866 ORTHO05D008689 5.8e-14 83.6 47 78.7
Ciclev10015335m.g Citrus clementina HOM05D006866 ORTHO05D008689 1.7e-13 82.0 46 76.1
CAN.G1114.2 Capsicum annuum HOM05D006866 ORTHO05D008689 2.4e-12 78.2 99 38.4
Manes.13G080558 Manihot esculenta HOM05D006866 ORTHO05D008689 4.6e-11 73.9 43 81.4
Cfa008015 Carpinus fangiana HOM05D000082 ORTHO05D008689 1.0e-10 72.8 107 43.0
Haze_06062 Corylus avellana HOM05D006866 ORTHO05D008689 1.0e-10 72.8 42 78.6
MD05G1251100 Malus domestica HOM05D006866 ORTHO05D008689 5.1e-10 70.5 47 70.2
CAN.G27.8 Capsicum annuum HOM05D006866 ORTHO05D008689 1.1e-09 69.3 63 54.0
EL10Ac8g19311 Beta vulgaris HOM05D006866 ORTHO05D008689 1.9e-09 68.6 41 70.7
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 1.2e-08 65.9 139 30.2
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 2.8e-08 64.7 144 28.5
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 2.8e-08 64.7 139 29.5
Cfa002018 Carpinus fangiana HOM05D000082 ORTHO05D000038 6.2e-08 63.5 46 65.2
Lj5g0020884 Lotus japonicus HOM05D000132 ORTHO05D000058 1.8e-07 62.0 38 73.7
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 3.1e-07 61.2 139 28.1
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 5.2e-07 60.5 160 27.5
DCAR_025559 Daucus carota HOM05D007168 ORTHO05D009495 6.8e-07 60.1 154 29.9
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 8.9e-07 59.7 141 28.4
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 8.9e-07 59.7 141 28.4
CARHR141110 Cardamine hirsuta HOM05D006866 ORTHO05D008689 1.5e-06 58.9 45 57.8
CARHR180830 Cardamine hirsuta HOM05D006866 ORTHO05D008689 2.0e-06 58.5 50 50.0
FAN02G3427 Fragaria x ananassa HOM05D000855 ORTHO05D008530 2.6e-06 58.2 139 26.6
Ca_01194_v3 Cicer arietinum L. HOM05D006218 ORTHO05D007338 3.4e-06 57.8 144 25.7
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 3.4e-06 57.8 139 26.6
PGR142G0989 Punica granatum HOM05D000855 ORTHO05D008530 3.4e-06 57.8 139 27.3
Sc20g0004090 Simmondsia chinensis HOM05D000855 ORTHO05D008530 3.4e-06 57.8 144 27.1
Lsat_1_v5_gn_3_126181 Lactuca sativa HOM05D007173 ORTHO05D009151 4.4e-06 57.4 141 27.7
PSO339G3775 Papaver somniferum HOM05D000855 ORTHO05D008530 4.4e-06 57.4 139 26.6
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 5.8e-06 57.0 142 29.6
Os01g0505500 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D000355 5.8e-06 57.0 162 26.5
Migut.D00798 Erythranthe guttata HOM05D007173 ORTHO05D009151 7.6e-06 56.6 140 25.7
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 7.6e-06 56.6 143 29.4
MBI12_g09300_MAGBIO Magnolia biondii HOM05D000855 ORTHO05D008530 7.6e-06 56.6 139 27.3
AagrBONN_evm.TU.Sc2ySwM_369.245 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.9e-06 56.2 148 27.7
Haze_15114 Corylus avellana HOM05D000891 ORTHO05D000761 9.9e-06 56.2 160 25.6
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 9.9e-06 56.2 143 30.8
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 9.9e-06 56.2 132 28.0


User provided reference genes

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