Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 3.1e-162 575.1 290 100.0
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 1.4e-143 513.1 299 86.0
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 1.6e-142 509.6 290 85.9
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 3.5e-142 508.4 284 88.7
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 4.6e-142 508.1 290 86.9
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 6.0e-142 507.7 286 87.1
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 3.0e-141 505.4 286 87.4
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 3.3e-140 501.9 290 85.2
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 9.6e-140 500.4 286 85.0
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 1.2e-139 500.0 286 86.0
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.2e-139 500.0 286 85.0
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 1.6e-139 499.6 287 87.1
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 1.6e-139 499.6 287 87.1
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 3.6e-139 498.4 287 85.7
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 4.7e-139 498.0 287 84.3
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 1.1e-138 496.9 284 86.6
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 1.1e-138 496.9 286 85.3
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 1.4e-138 496.5 287 85.7
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 2.4e-138 495.7 286 85.3
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 3.1e-138 495.4 284 84.9
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 5.2e-138 494.6 286 86.4
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 5.2e-138 494.6 290 85.2
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 8.9e-138 493.8 287 85.0
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 1.2e-137 493.4 286 85.7
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 2.0e-137 492.7 284 86.6
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 2.0e-137 492.7 287 85.0
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 4.4e-137 491.5 287 84.3
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 7.6e-137 490.7 286 83.9
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 7.6e-137 490.7 284 84.9
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 9.9e-137 490.3 284 83.8
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 1.3e-136 490.0 287 84.3
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.3e-136 490.0 284 85.2
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 1.7e-136 489.6 284 83.8
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 2.9e-136 488.8 287 84.7
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 2.9e-136 488.8 284 84.2
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 3.8e-136 488.4 284 83.5
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 4.9e-136 488.0 284 84.9
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 6.4e-136 487.6 286 84.3
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 6.4e-136 487.6 287 84.0
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 3.2e-135 485.3 284 84.5
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 7.1e-135 484.2 293 83.6
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 7.1e-135 484.2 284 84.2
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 1.6e-134 483.0 287 84.3
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 2.1e-134 482.6 288 83.0
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 2.7e-134 482.3 286 82.5
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 3.5e-134 481.9 289 81.7
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 3.5e-134 481.9 290 82.8
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 3.5e-134 481.9 288 83.7
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 6.0e-134 481.1 286 82.2
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.0e-133 480.3 286 81.8
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.0e-133 480.3 286 82.5
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 1.7e-133 479.6 286 81.8
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 2.3e-133 479.2 290 81.0
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 3.0e-133 478.8 290 80.7
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 3.0e-133 478.8 286 83.2
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 3.0e-133 478.8 290 81.0
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 6.6e-133 477.6 286 81.8
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 6.6e-133 477.6 286 82.9
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 1.1e-132 476.9 290 80.7
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.9e-132 476.1 287 81.2
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 1.9e-132 476.1 319 77.7
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 3.3e-132 475.3 287 81.9
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 5.6e-132 474.6 287 80.8
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 1.6e-131 473.0 303 79.5
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 4.8e-131 471.5 284 83.5
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 6.2e-131 471.1 286 80.1
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 1.1e-130 470.3 287 81.2
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 2.4e-130 469.2 289 78.9
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 2.4e-130 469.2 289 78.9
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 2.4e-130 469.2 289 78.9
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 2.4e-130 469.2 287 80.1
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 3.1e-130 468.8 289 80.3
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 3.1e-130 468.8 289 80.3
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 3.1e-130 468.8 289 79.6
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 5.3e-130 468.0 286 80.8
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 5.3e-130 468.0 289 78.9
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 5.3e-130 468.0 289 78.5
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 5.3e-130 468.0 289 78.5
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 6.9e-130 467.6 289 80.3
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 6.9e-130 467.6 286 80.8
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 9.0e-130 467.2 287 80.1
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 1.5e-129 466.5 286 81.1
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 1.5e-129 466.5 306 78.4
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 2.0e-129 466.1 284 81.7
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 3.4e-129 465.3 286 80.4
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 4.4e-129 464.9 286 80.4
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 4.4e-129 464.9 284 81.0
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 9.9e-129 463.8 288 77.4
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 9.9e-129 463.8 290 77.6
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 9.9e-129 463.8 287 80.8
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 1.7e-128 463.0 285 80.4
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.7e-128 463.0 291 80.4
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 2.2e-128 462.6 286 80.4
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 2.9e-128 462.2 286 79.7
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 2.9e-128 462.2 289 80.3
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 8.4e-128 460.7 287 78.4
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 1.4e-127 459.9 288 77.4
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 1.9e-127 459.5 286 79.7
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 1.9e-127 459.5 287 78.7
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.9e-127 459.5 284 80.3
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.9e-127 459.5 286 79.4
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 2.4e-127 459.1 286 79.7
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 3.2e-127 458.8 286 79.4
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 7.1e-127 457.6 287 79.4
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 9.3e-127 457.2 286 79.7
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 9.3e-127 457.2 288 76.4
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 9.3e-127 457.2 448 58.0
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 1.2e-126 456.8 286 79.7
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 3.5e-126 455.3 261 87.0
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 4.6e-126 454.9 287 77.7
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 7.9e-126 454.1 286 78.3
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 3.9e-125 451.8 286 78.0
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.9e-124 449.5 292 80.1
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 1.9e-124 449.5 294 76.2
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 1.9e-124 449.5 286 76.9
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 4.3e-124 448.4 289 78.2
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 7.4e-124 447.6 290 75.9
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 4.8e-123 444.9 299 75.6
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 8.1e-123 444.1 289 77.9
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 1.8e-122 443.0 271 81.9
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 5.3e-122 441.4 299 76.6
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 1.7e-120 436.4 302 73.5
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 4.9e-120 434.9 288 74.3
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 5.5e-119 431.4 287 75.3
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 2.1e-118 429.5 289 75.4
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 1.3e-117 426.8 232 90.1
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 1.8e-117 426.4 287 75.3
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 6.7e-117 424.5 306 72.9
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 1.6e-115 419.9 286 73.1
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 5.3e-114 414.8 288 72.6
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 6.9e-114 414.5 288 72.2
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 1.2e-113 413.7 288 72.2
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 4.5e-113 411.8 256 78.1
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 1.4e-111 406.8 283 71.7
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 3.5e-110 402.1 254 77.6
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 7.9e-110 401.0 287 67.2
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 8.7e-109 397.5 229 84.3
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 2.1e-107 392.9 287 66.2
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 2.1e-107 392.9 293 68.6
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 3.7e-107 392.1 287 65.5
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 9.0e-106 387.5 285 65.6
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 5.0e-104 381.7 294 67.3
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 4.2e-103 378.6 298 68.8
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 2.8e-99 365.9 232 76.7
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 1.2e-94 350.5 289 60.9
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 8.2e-91 337.8 203 82.8
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 3.9e-85 318.9 285 58.2
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 2.5e-79 299.7 267 61.4
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 6.3e-75 285.0 284 52.5
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 6.3e-75 285.0 287 51.9
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 2.1e-70 270.0 284 48.2
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 2.0e-68 263.5 281 49.5
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 4.4e-68 262.3 164 78.7
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 7.8e-57 224.9 150 72.0
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 1.3e-56 224.2 151 76.8
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 6.1e-54 215.3 113 92.0
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 3.7e-51 206.1 139 75.5
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 3.9e-24 116.3 82 72.0
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 3.3e-23 113.2 124 50.8
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 2.1e-22 110.5 76 72.4
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 1.4e-21 107.8 152 42.8
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 1.8e-21 107.5 79 73.4
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 1.2e-20 104.8 66 77.3
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 5.8e-20 102.4 52 92.3
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 5.8e-20 102.4 79 70.9
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 6.4e-19 99.0 79 69.6
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 8.4e-19 98.6 57 84.2
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 2.3e-16 90.5 67 65.7
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 3.9e-16 89.7 149 41.6
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 4.3e-15 86.3 58 70.7
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 4.3e-15 86.3 58 70.7
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 1.2e-09 68.2 55 67.3
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 4.3e-07 59.7 38 76.3
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 4.3e-07 59.7 41 61.0
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 8.1e-06 55.5 60 56.7


User provided reference genes

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