Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A322G63 Lonicera japonica HOM05D005567 ORTHO05D005651 1.7e-143 512.7 261 100.0
Hma1.2p1_1794F.1_g302670 Hydrangea macrophylla HOM05D005567 ORTHO05D005651 1.5e-59 233.8 510 36.5
Dinv32216 Davidia involucrata HOM05D005567 ORTHO05D005651 2.0e-59 233.4 509 36.7
Lj2C923G5 Lonicera japonica HOM05D005567 ORTHO05D005651 2.9e-55 219.5 432 39.4
Rhsim11G0051300 Rhododendron simsii HOM05D005567 ORTHO05D005651 3.2e-54 216.1 502 35.5
Lj2C924T4 Lonicera japonica HOM05D005567 ORTHO05D005651 4.2e-54 215.7 432 38.9
Rhsim13G0117000 Rhododendron simsii HOM05D005567 ORTHO05D005651 9.4e-54 214.5 514 34.8
TAR626G1087 Trochodendron aralioides HOM05D005567 ORTHO05D005651 1.2e-53 214.2 509 35.0
Oeu040093.1 Olea europaea HOM05D005567 ORTHO05D005651 1.8e-52 210.3 502 34.3
Gohir.D05G149000 Gossypium hirsutum HOM05D005567 ORTHO05D005651 5.2e-52 208.8 477 34.8
Nn3g20454 Nelumbo nucifera HOM05D005567 ORTHO05D005651 8.8e-52 208.0 503 34.0
GSVIVG01021538001 Vitis vinifera HOM05D005567 ORTHO05D005651 2.6e-51 206.5 505 33.1
Ciclev10025380m.g Citrus clementina HOM05D005567 ORTHO05D005651 3.4e-51 206.1 504 34.5
Duzib192G0463 Durio zibethinus HOM05D005567 ORTHO05D005651 7.5e-51 204.9 501 33.3
COL.COLO4_31019 Corchorus olitorius HOM05D005567 ORTHO05D005651 1.1e-49 201.1 529 32.5
CiPaw.09G120700 Carya illinoinensis HOM05D005567 ORTHO05D005651 2.4e-49 199.9 504 33.3
Nitab4.5_0002611g0120 Nicotiana tabacum HOM05D005567 ORTHO05D005651 2.4e-49 199.9 501 33.3
PGSC0003DMG400022975 Solanum tuberosum HOM05D005567 ORTHO05D005651 2.4e-49 199.9 510 33.5
Solyc07g005890.3 Solanum lycopersicum HOM05D005567 ORTHO05D005651 4.1e-49 199.1 509 33.4
CSS0035269 Camellia sinensis var. sinensis HOM05D005567 ORTHO05D005651 7.0e-49 198.4 476 35.1
Cc11_g02850 Coffea canephora HOM05D005567 ORTHO05D005651 7.0e-49 198.4 497 32.2
Gorai.009G153000 Gossypium raimondii HOM05D005567 ORTHO05D005651 7.0e-49 198.4 501 32.9
CAN.G160.8 Capsicum annuum HOM05D005567 ORTHO05D005651 9.1e-49 198.0 509 32.8
PGR035G0006 Punica granatum HOM05D005567 ORTHO05D005651 9.1e-49 198.0 503 33.2
Sopen07g002020 Solanum pennellii HOM05D005567 ORTHO05D005651 1.2e-48 197.6 510 33.3
Cfa000907 Carpinus fangiana HOM05D005567 ORTHO05D005651 1.6e-48 197.2 502 33.1
Gohir.A05G146500 Gossypium hirsutum HOM05D005567 ORTHO05D005651 1.6e-48 197.2 501 32.7
Atru.chr10.1112 Acer truncatum HOM05D005567 ORTHO05D005651 2.0e-48 196.8 509 32.8
DCAR_003891 Daucus carota HOM05D005567 ORTHO05D005651 2.0e-48 196.8 502 32.9
Potri.004G158000 Populus trichocarpa HOM05D005567 ORTHO05D005651 1.0e-47 194.5 509 32.6
PGSC0003DMG401011204 Solanum tuberosum HOM05D005567 ORTHO05D005651 1.3e-47 194.1 292 44.2
Manes.15G124500 Manihot esculenta HOM05D005567 ORTHO05D005651 2.2e-47 193.4 509 31.4
MD05G1280500 Malus domestica HOM05D005567 ORTHO05D005651 2.9e-47 193.0 504 31.7
Oeu054932.1 Olea europaea HOM05D005567 ORTHO05D005651 2.9e-47 193.0 531 32.0
Eucgr.E02430 Eucalyptus grandis HOM05D005567 ORTHO05D005651 5.0e-47 192.2 503 32.0
CANSAT35G1600 Cannabis sativa HOM05D005567 ORTHO05D005651 1.1e-46 191.0 509 32.0
Nitab4.5_0003551g0060 Nicotiana tabacum HOM05D005567 ORTHO05D005651 2.5e-46 189.9 292 42.8
TWI73G0487 Tripterygium wilfordii HOM05D005567 ORTHO05D005651 3.2e-46 189.5 502 32.3
Prupe.4G084900 Prunus persica HOM05D005567 ORTHO05D005651 4.2e-46 189.1 277 43.7
MSTRG.16261 Avicennia marina HOM05D005567 ORTHO05D005651 8.0e-45 184.9 504 31.2
SGA_v2.0_scaffold1G00200 Striga asiatica HOM05D005567 ORTHO05D005651 8.0e-45 184.9 509 31.0
MBI18_g03007_MAGBIO Magnolia biondii HOM05D005567 ORTHO05D005651 1.8e-44 183.7 506 32.2
MELO3C007111.2 Cucumis melo HOM05D005567 ORTHO05D005651 4.0e-44 182.6 504 31.9
Sed0009662 Sechium edule HOM05D005567 ORTHO05D005651 6.8e-44 181.8 504 31.7
RcHm_v2.0_Chr5g0014641 Rosa chinensis HOM05D005567 ORTHO05D005651 8.8e-44 181.4 502 30.7
CsaV3_6G051950 Cucumis sativus L. HOM05D005567 ORTHO05D005651 2.0e-43 180.3 502 31.5
CSS0008572 Camellia sinensis var. sinensis HOM05D005567 ORTHO05D005651 2.6e-43 179.9 438 34.9
FAN11G3281 Fragaria x ananassa HOM05D005567 ORTHO05D005651 1.7e-42 177.2 500 30.6
FAN25G0576 Fragaria x ananassa HOM05D005567 ORTHO05D005651 2.2e-42 176.8 500 30.6
QL05p055424 Quercus lobata HOM05D005567 ORTHO05D005651 2.2e-42 176.8 502 31.3
FvH4_3g05121 Fragaria vesca HOM05D005567 ORTHO05D005651 8.3e-42 174.9 500 30.4
ClCG01G024830 Citrullus lanatus HOM05D005567 ORTHO05D005651 1.4e-41 174.1 457 32.6
HanXRQChr13g0422501 Helianthus annuus HOM05D005567 ORTHO05D005651 1.8e-41 173.7 506 31.0
FAN16G1390 Fragaria x ananassa HOM05D005567 ORTHO05D005651 2.4e-41 173.3 500 30.2
Sc05g0006010 Simmondsia chinensis HOM05D005567 ORTHO05D005651 2.4e-41 173.3 500 30.2
PGR031G2076 Punica granatum HOM05D005567 ORTHO05D005651 4.1e-41 172.6 479 31.7
Aqoxy5G03882 Aquilegia oxysepala HOM05D005567 ORTHO05D005651 7.0e-41 171.8 495 30.3
Lsat_1_v5_gn_3_121441 Lactuca sativa HOM05D005567 ORTHO05D005651 1.2e-40 171.0 508 31.3
Aa31LG10G6270 Aethionema arabicum HOM05D002639 ORTHO05D005651 2.7e-40 169.9 297 38.4
FAN21G1630 Fragaria x ananassa HOM05D005567 ORTHO05D005651 5.9e-40 168.7 498 30.5
vmacro03436 Vaccinium macrocarpon HOM05D005567 ORTHO05D005651 1.0e-39 167.9 140 65.0
AT4G15850 Arabidopsis thaliana HOM05D005567 ORTHO05D005651 1.3e-39 167.5 292 38.0
CARHR290380 Cardamine hirsuta HOM05D005567 ORTHO05D005651 2.3e-39 166.8 298 38.3
Actinidia13448 Actinidia chinensis HOM05D005567 ORTHO05D005651 2.9e-39 166.4 148 62.8
AL7G39430 Arabidopsis lyrata HOM05D005567 ORTHO05D005651 3.8e-39 166.0 292 37.7
A01p21660 Brassica napus HOM05D005567 ORTHO05D005651 3.8e-39 166.0 270 40.7
BraA01t02075Z Brassica rapa HOM05D005567 ORTHO05D005651 3.8e-39 166.0 270 40.7
Thhalv10024904m.g Eutrema salsugineum HOM05D005567 ORTHO05D005651 6.6e-39 165.2 298 38.9
BcaNung00240 Brassica carinata HOM05D005567 ORTHO05D005651 3.3e-38 162.9 281 39.5
BcaC09g50282 Brassica carinata HOM05D005567 ORTHO05D005651 4.3e-38 162.5 270 40.4
C01p27020 Brassica napus HOM05D005567 ORTHO05D005651 4.3e-38 162.5 270 40.4
BolC1t02650H Brassica oleracea HOM05D005567 ORTHO05D005651 4.3e-38 162.5 270 40.4
Sp7g14250 Schrenkiella parvula HOM05D005567 ORTHO05D005651 1.2e-37 161.0 282 39.0
Migut.M00885 Erythranthe guttata HOM05D005567 ORTHO05D005651 4.7e-37 159.1 282 38.7
ECA240G2278 Erigeron canadensis HOM05D005567 ORTHO05D005651 6.1e-37 158.7 498 30.3
THA.LOC104802575 Tarenaya hassleriana HOM05D005567 ORTHO05D005651 6.1e-37 158.7 493 29.0
Carub.0007s2580 Capsella rubella HOM05D005567 ORTHO05D005651 8.0e-37 158.3 285 37.2
Peaxi162Scf00401g00029 Petunia axillaris HOM05D005567 ORTHO05D005651 1.4e-36 157.5 437 32.3
Lalb_Chr02g0156151 Lupinus albus HOM05D005567 ORTHO05D005651 2.3e-36 156.8 280 38.2
Oeu008947.1 Olea europaea HOM05D005567 ORTHO05D005651 4.0e-36 156.0 160 55.0
Lj4g0007029 Lotus japonicus HOM05D005567 ORTHO05D005651 5.2e-36 155.6 503 27.6
Psat7g080400 Pisum sativum HOM05D005567 ORTHO05D005651 1.2e-35 154.5 276 37.3
SGA_v2.0_scaffold58G20438 Striga asiatica HOM05D005567 ORTHO05D005651 2.0e-35 153.7 407 33.2
CSS0049309 Camellia sinensis var. sinensis HOM05D005567 ORTHO05D005651 2.6e-35 153.3 405 33.3
HPP92_028168 Vanilla planifolia HOM05D005567 ORTHO05D005651 4.4e-35 152.5 492 28.9
Ca_18163_v3 Cicer arietinum L. HOM05D005567 ORTHO05D005651 9.8e-35 151.4 277 36.5
TPR.G21614 Trifolium pratense HOM05D002142 ORTHO05D005651 1.3e-34 151.0 277 36.5
SHI38399 Sapria himalayana HOM05D005567 ORTHO05D005651 2.2e-34 150.2 273 37.0
arahy.Tifrunner.gnm1.ann1.EWV0WN Arachis hypogaea HOM05D005567 ORTHO05D005651 3.7e-34 149.4 281 35.2
TPR.G9554 Trifolium pratense HOM05D005567 ORTHO05D005651 3.7e-34 149.4 277 36.5
AUR62027404 Chenopodium quinoa HOM05D005567 ORTHO05D005651 1.4e-33 147.5 274 36.9
AUR62031319 Chenopodium quinoa HOM05D005567 ORTHO05D005651 2.4e-33 146.7 274 37.2
Medtr5g077690 Medicago truncatula HOM05D005567 ORTHO05D005651 3.2e-33 146.4 276 36.2
Oeu054930.1 Olea europaea HOM05D005567 ORTHO05D005651 3.2e-33 146.4 141 56.7
EL10Ac8g19315 Beta vulgaris HOM05D005567 ORTHO05D005651 4.1e-33 146.0 263 37.3
ATR0661G527 Amborella trichopoda HOM05D005567 ORTHO05D005651 1.6e-32 144.1 253 39.1
SEGI_23194 Sequoiadendron giganteum HOM05D005567 ORTHO05D005651 2.7e-32 143.3 502 27.9
arahy.Tifrunner.gnm1.ann1.JRZ00F Arachis hypogaea HOM05D005567 ORTHO05D005651 3.5e-32 142.9 493 27.8
Os02g0795900 Oryza sativa ssp. japonica HOM05D005567 ORTHO05D005651 4.6e-32 142.5 250 38.8
BcaC09g50276 Brassica carinata HOM05D005567 ORTHO05D005651 1.7e-31 140.6 134 59.0
Ah.14g086310 Amaranthus hybridus HOM05D005567 ORTHO05D005651 3.0e-31 139.8 275 35.6
Glyma.08G231300 Glycine max HOM05D005567 ORTHO05D005651 6.6e-31 138.7 454 29.7
FAN16G0453 Fragaria x ananassa HOM05D005567 ORTHO05D005651 1.5e-30 137.5 431 29.7
Zm00001eb257820 Zea mays HOM05D005567 ORTHO05D005651 4.3e-30 136.0 249 38.2
VMungo0251G3629 Vigna mungo HOM05D005567 ORTHO05D005651 4.7e-29 132.5 503 28.0
Phvul.002G179500 Phaseolus vulgaris HOM05D005567 ORTHO05D005651 1.0e-28 131.3 494 27.9
PSO541G2802 Papaver somniferum HOM05D005567 ORTHO05D005651 3.1e-28 129.8 168 47.0
SMO139G0134 Selaginella moellendorffii HOM05D005567 ORTHO05D005651 4.0e-28 129.4 299 33.8
CSS0004710 Camellia sinensis var. sinensis HOM05D005567 ORTHO05D005651 5.2e-28 129.0 78 84.6
PSO675G8008 Papaver somniferum HOM05D005567 ORTHO05D005651 1.5e-27 127.5 505 26.1
Pp3c6_13920 Physcomitrium patens HOM05D005567 ORTHO05D005651 1.5e-27 127.5 145 49.7
Cpa.g.sc17.43 Carica papaya HOM05D005567 ORTHO05D005651 5.8e-27 125.6 301 33.6
PSO384G1189 Papaver somniferum HOM05D005567 ORTHO05D005651 1.7e-26 124.0 149 47.7
Glyma.14G115100 Glycine max HOM05D005326 ORTHO05D006734 2.2e-26 123.6 241 36.5
Hund12175 Selenicereus undatus HOM05D005567 ORTHO05D005651 6.4e-26 122.1 86 70.9
Mapoly0149s0031 Marchantia polymorpha HOM05D017422 ORTHO05D005651 8.3e-26 121.7 135 50.4
AagrBONN_evm.TU.Sc2ySwM_344.3570 Anthoceros agrestis HOM05D005567 ORTHO05D005651 1.9e-25 120.6 146 47.9
CAN.G2122.3 Capsicum annuum HOM05D005567 ORTHO05D005651 1.9e-25 120.6 314 32.5
PSO339G4780 Papaver somniferum HOM05D005567 ORTHO05D005651 1.9e-25 120.6 500 25.8
CDE11G0998 Ceratophyllum demersum HOM05D005567 ORTHO05D005651 3.9e-23 112.8 439 27.6
RcHm_v2.0_Chr5g0014671 Rosa chinensis HOM05D005567 ORTHO05D005651 3.3e-22 109.8 118 51.7
CBR_g39259 Chara braunii HOM05D000019 ORTHO05D000002 5.6e-22 109.0 152 46.1
vmacro03355 Vaccinium macrocarpon HOM05D005567 ORTHO05D005651 1.6e-21 107.5 100 57.0
Mapoly3797s0001 Marchantia polymorpha HOM05D005567 ORTHO05D005651 3.1e-20 103.2 71 73.2
Actinidia13449 Actinidia chinensis HOM05D005567 ORTHO05D005651 4.0e-20 102.8 279 31.9
Cfa004323 Carpinus fangiana HOM05D013114 ORTHO05D005651 5.8e-19 99.0 60 81.7
Thecc.06G145300 Theobroma cacao HOM05D005567 ORTHO05D005651 1.4e-17 94.4 277 31.4
Actinidia33657 Actinidia chinensis HOM05D005567 ORTHO05D005651 7.8e-16 88.6 208 35.1
Cre07.g319750 Chlamydomonas reinhardtii HOM05D005567 ORTHO05D005651 5.6e-14 82.4 147 38.8
PGR031G1497 Punica granatum HOM05D005567 ORTHO05D005651 4.7e-13 79.3 112 46.4
RcHm_v2.0_Chr5g0014661 Rosa chinensis HOM05D005567 ORTHO05D005651 9.9e-11 71.6 77 50.6
MCO01G746 Micromonas commoda HOM05D000032 ORTHO05D005651 2.2e-10 70.5 77 49.4
Hund17759 Selenicereus undatus HOM05D005567 ORTHO05D005651 9.2e-09 65.1 105 41.9
Nitab4.5_0003551g0070 Nicotiana tabacum HOM05D000032 ORTHO05D005651 1.2e-08 64.7 103 42.7
Haze_05648 Corylus avellana HOM05D005567 ORTHO05D005651 2.5e-06 57.0 44 61.4
ATR0661G350 Amborella trichopoda HOM05D000032 ORTHO05D005651 3.3e-06 56.6 105 36.2
Medtr8g079462 Medicago truncatula HOM05D005567 ORTHO05D005651 3.3e-06 56.6 51 54.9
PGR031G0768 Punica granatum HOM05D000032 ORTHO05D004701 3.3e-06 56.6 90 43.3
vmacro01647 Vaccinium macrocarpon HOM05D000032 ORTHO05D004701 3.3e-06 56.6 89 43.8
CSS0029675 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004701 7.3e-06 55.5 158 35.4
CSS0042177 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D004701 7.3e-06 55.5 158 35.4
PRCOL_00000824 Prasinoderma coloniale HOM05D000032 ORTHO05D005651 7.3e-06 55.5 75 41.3
Actinidia17725 Actinidia chinensis HOM05D000032 ORTHO05D004701 9.6e-06 55.1 88 42.0


User provided reference genes

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