Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 6.9e-248 860.1 424 100.0
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 5.6e-165 584.7 484 66.1
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 4.5e-122 442.2 482 50.8
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 5.3e-115 418.7 482 48.8
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 4.7e-111 405.6 479 47.6
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 8.8e-110 401.4 489 47.0
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.3e-108 397.5 487 46.4
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.0e-105 387.9 489 46.6
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.3e-105 387.5 489 47.2
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 6.6e-105 385.2 482 46.3
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 6.1e-103 378.6 485 44.3
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.8e-102 377.1 492 45.1
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 2.3e-102 376.7 476 46.0
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 4.0e-102 375.9 486 45.3
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 5.2e-102 375.6 485 45.2
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.2e-98 364.4 480 43.5
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 2.7e-98 363.2 482 44.2
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 3.5e-98 362.8 481 44.3
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.7e-97 360.5 482 42.9
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 2.9e-97 359.8 494 43.9
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 5.0e-97 359.0 481 44.7
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 1.5e-96 357.5 495 42.0
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.7e-95 352.4 468 44.9
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 6.1e-95 352.1 489 41.3
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 2.9e-92 343.2 467 42.0
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 3.2e-91 339.7 484 42.6
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 7.8e-90 335.1 492 43.3
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 1.0e-89 334.7 488 40.4
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.3e-89 334.3 477 41.5
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 1.3e-89 334.3 482 41.3
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.7e-89 334.0 478 40.8
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 2.5e-88 330.1 477 41.1
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 4.3e-88 329.3 493 42.4
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.1e-87 327.0 491 42.0
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 2.1e-87 327.0 492 40.9
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.1e-86 324.7 487 40.5
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 1.4e-86 324.3 495 40.8
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 2.3e-86 323.6 454 44.7
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 2.3e-86 323.6 472 41.5
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 3.1e-86 323.2 467 41.3
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 3.1e-86 323.2 483 40.0
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 5.2e-86 322.4 495 39.8
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 6.8e-86 322.0 476 40.8
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 8.9e-86 321.6 491 40.9
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 1.5e-85 320.9 487 39.8
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.0e-85 320.5 474 41.4
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 2.6e-85 320.1 485 41.4
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.6e-85 320.1 474 41.4
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 2.6e-85 320.1 489 39.3
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.4e-85 319.3 473 41.2
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 9.8e-85 318.2 488 39.5
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 9.8e-85 318.2 490 40.8
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 3.7e-84 316.2 499 40.7
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.1e-83 312.8 489 38.9
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.1e-82 310.5 467 39.4
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.1e-82 310.5 467 39.4
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 3.5e-82 309.7 465 40.9
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 4.6e-82 309.3 489 38.7
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 4.6e-82 309.3 448 41.7
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 7.8e-82 308.5 472 39.8
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.3e-81 307.0 498 37.1
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 2.5e-80 303.5 461 41.9
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 3.3e-80 303.1 486 38.1
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 7.3e-80 302.0 488 38.5
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 2.8e-79 300.1 498 36.9
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 6.2e-79 298.9 483 37.5
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 8.1e-79 298.5 466 41.2
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.4e-78 297.7 486 40.1
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.6e-77 293.5 491 38.9
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 4.4e-77 292.7 482 39.2
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 5.8e-77 292.4 478 38.3
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 3.7e-76 289.7 496 39.7
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 2.4e-75 287.0 480 38.5
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.2e-74 284.6 373 44.0
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.6e-74 284.3 486 38.3
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 2.7e-74 283.5 480 37.3
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 2.5e-72 276.9 480 36.9
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 5.6e-72 275.8 427 39.3
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.2e-71 274.6 420 39.0
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.2e-71 274.6 420 39.0
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.2e-71 274.6 420 39.0
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.6e-71 274.2 499 34.7
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 1.6e-71 274.2 492 36.6
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 2.8e-71 273.5 468 38.7
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 6.2e-71 272.3 481 36.4
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 8.1e-71 271.9 426 38.3
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 8.1e-71 271.9 473 37.2
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 3.1e-70 270.0 473 37.0
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 3.1e-70 270.0 481 35.6
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 3.1e-70 270.0 444 40.8
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.2e-69 268.1 493 35.5
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 5.8e-69 265.8 488 36.3
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 9.9e-69 265.0 493 34.1
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.7e-68 264.2 493 34.1
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.9e-68 262.7 393 42.7
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 1.2e-66 258.1 498 35.3
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.6e-66 257.7 484 35.1
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 2.1e-66 257.3 232 55.6
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.7e-66 256.9 410 38.8
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 2.3e-65 253.8 422 39.8
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 3.0e-65 253.4 227 56.4
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 7.3e-64 248.8 233 52.4
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.4e-62 243.8 249 52.2
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 1.2e-61 241.5 389 42.7
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.5e-61 241.1 176 62.5
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 4.9e-60 236.1 457 34.1
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-57 228.0 293 42.0
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.2e-52 210.7 235 44.7
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 3.3e-48 196.8 217 45.6
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 4.2e-43 179.9 246 39.0
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 6.0e-42 176.0 328 38.4
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 1.2e-37 161.8 187 40.6
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 4.5e-37 159.8 228 42.1
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 4.2e-35 153.3 404 30.4
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 6.1e-34 149.4 367 28.1
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 2.5e-32 144.1 153 44.4
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 2.6e-29 134.0 223 36.3
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 9.4e-27 125.6 238 31.9
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 9.7e-24 115.5 226 32.7
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 1.3e-23 115.2 318 32.7
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.7e-18 97.4 412 27.7
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 9.1e-14 82.4 296 27.7
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 1.5e-13 81.6 155 35.5
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 1.9e-11 74.7 95 33.7
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 4.2e-11 73.6 233 31.8
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 1.4e-09 68.6 60 50.0
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.5e-08 65.1 62 43.5
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.6e-08 64.3 85 43.5
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 3.3e-08 63.9 61 49.2
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 5.7e-08 63.2 52 63.5
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 9.7e-08 62.4 65 44.6
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 2.2e-07 61.2 56 57.1
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 3.7e-07 60.5 97 27.8
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 7.0e-06 56.2 57 50.9


User provided reference genes

Program Settings