Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj2A1196G44 Lonicera japonica HOM05D000880 ORTHO05D007053 1.5e-192 676.0 344 100.0
Atru.chr5.1139 Acer truncatum HOM05D000880 ORTHO05D007053 1.5e-144 516.5 336 82.4
CSS0009761 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D007053 3.4e-144 515.4 337 82.5
Actinidia01490 Actinidia chinensis HOM05D000880 ORTHO05D007053 1.7e-143 513.1 337 81.6
DCAR_018329 Daucus carota HOM05D000880 ORTHO05D007053 1.7e-143 513.1 342 79.5
Thecc.01G301400 Theobroma cacao HOM05D000880 ORTHO05D007053 3.8e-143 511.9 337 81.3
GSVIVG01028027001 Vitis vinifera HOM05D000880 ORTHO05D007053 4.9e-143 511.5 337 79.8
Dinv02562 Davidia involucrata HOM05D000880 ORTHO05D007053 1.1e-142 510.4 337 81.9
Haze_04945 Corylus avellana HOM05D000880 ORTHO05D007053 7.1e-142 507.7 338 81.1
CiPaw.08G094700 Carya illinoinensis HOM05D000880 ORTHO05D007053 9.3e-142 507.3 338 80.8
QL12p028391 Quercus lobata HOM05D000880 ORTHO05D007053 2.1e-141 506.1 338 80.8
COL.COLO4_23337 Corchorus olitorius HOM05D000880 ORTHO05D007053 3.5e-141 505.4 337 81.3
Dinv33058 Davidia involucrata HOM05D000880 ORTHO05D007053 1.0e-140 503.8 337 81.3
Manes.05G061800 Manihot esculenta HOM05D000880 ORTHO05D007053 5.1e-140 501.5 338 79.9
Cfa005905 Carpinus fangiana HOM05D000880 ORTHO05D007053 8.7e-140 500.7 338 80.2
Rhsim13G0009800 Rhododendron simsii HOM05D000880 ORTHO05D007053 1.9e-139 499.6 337 80.7
Nn3g21501 Nelumbo nucifera HOM05D000880 ORTHO05D007053 5.6e-139 498.0 339 77.3
Ciclev10018978m.g Citrus clementina HOM05D000880 ORTHO05D007053 8.1e-138 494.2 336 79.2
MBI14_g32928_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D007053 2.6e-136 489.2 338 78.4
Potri.014G128400 Populus trichocarpa HOM05D000880 ORTHO05D007053 4.5e-136 488.4 337 78.6
vmacro02446 Vaccinium macrocarpon HOM05D000880 ORTHO05D007053 9.9e-136 487.3 351 77.5
RcHm_v2.0_Chr6g0294121 Rosa chinensis HOM05D000880 ORTHO05D007053 2.9e-135 485.7 338 77.2
Glyma.10G017800 Glycine max HOM05D000880 ORTHO05D007053 3.8e-135 485.3 337 77.4
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 8.4e-135 484.2 338 76.9
Cc01_g20910 Coffea canephora HOM05D000880 ORTHO05D007053 2.4e-134 482.6 337 77.7
Hund05431 Selenicereus undatus HOM05D000880 ORTHO05D007053 2.4e-134 482.6 337 77.2
Oeu054121.1 Olea europaea HOM05D000880 ORTHO05D007053 4.2e-134 481.9 342 76.9
FvH4_2g25810 Fragaria vesca HOM05D000880 ORTHO05D007053 9.3e-134 480.7 338 76.3
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 9.3e-134 480.7 338 76.3
Migut.D00148 Erythranthe guttata HOM05D000880 ORTHO05D007053 1.2e-133 480.3 336 76.2
MSTRG.9184 Avicennia marina HOM05D000880 ORTHO05D007053 1.6e-133 479.9 336 75.9
Peaxi162Scf00001g42030 Petunia axillaris HOM05D000880 ORTHO05D007053 2.7e-133 479.2 337 76.0
Prupe.8G262200 Prunus persica HOM05D000880 ORTHO05D007053 2.7e-133 479.2 338 76.9
Glyma.02G017400 Glycine max HOM05D000880 ORTHO05D007053 3.5e-133 478.8 337 76.6
CAN.G472.10 Capsicum annuum HOM05D000880 ORTHO05D007053 3.0e-132 475.7 336 75.3
MD03G1288900 Malus domestica HOM05D000880 ORTHO05D007053 3.0e-132 475.7 337 77.4
Lj5g0001867 Lotus japonicus HOM05D000880 ORTHO05D007053 8.7e-132 474.2 337 76.3
PGR044G2013 Punica granatum HOM05D000880 ORTHO05D007053 8.7e-132 474.2 338 75.1
VMungo0720G1277 Vigna mungo HOM05D000880 ORTHO05D007053 1.5e-131 473.4 337 76.3
Ca_10329_v3 Cicer arietinum L. HOM05D000880 ORTHO05D007053 4.3e-131 471.9 337 76.3
AUR62008670 Chenopodium quinoa HOM05D000880 ORTHO05D007053 1.3e-130 470.3 337 75.1
AUR62025574 Chenopodium quinoa HOM05D000880 ORTHO05D007053 1.3e-130 470.3 337 75.1
EL10Ac7g17514 Beta vulgaris HOM05D000880 ORTHO05D007053 2.1e-130 469.5 336 75.6
Sc05g0003770 Simmondsia chinensis HOM05D000880 ORTHO05D007053 6.2e-130 468.0 338 75.1
Gohir.A11G114100 Gossypium hirsutum HOM05D000880 ORTHO05D007053 8.1e-130 467.6 336 77.1
Gorai.007G127700 Gossypium raimondii HOM05D000880 ORTHO05D007053 8.1e-130 467.6 336 76.8
TWI59G0706 Tripterygium wilfordii HOM05D000880 ORTHO05D007053 8.1e-130 467.6 337 75.4
Aqoxy2G02934 Aquilegia oxysepala HOM05D000880 ORTHO05D007053 2.4e-129 466.1 337 75.1
PSO384G2678 Papaver somniferum HOM05D000880 ORTHO05D007053 2.4e-129 466.1 338 74.9
Solyc09g075190.3 Solanum lycopersicum HOM05D000880 ORTHO05D007053 4.0e-129 465.3 336 74.1
Sopen09g030010 Solanum pennellii HOM05D000880 ORTHO05D007053 5.3e-129 464.9 336 73.8
PSO339G1812 Papaver somniferum HOM05D000880 ORTHO05D007053 6.9e-129 464.5 338 74.9
SalBow3G0448 Salvia bowleyana HOM05D000880 ORTHO05D007053 9.0e-129 464.2 335 75.5
Phvul.007G147200 Phaseolus vulgaris HOM05D000880 ORTHO05D007053 1.2e-128 463.8 335 75.2
Eucgr.K03489 Eucalyptus grandis HOM05D000880 ORTHO05D007053 1.0e-127 460.7 340 74.4
THA.LOC104802176 Tarenaya hassleriana HOM05D000880 ORTHO05D007053 2.2e-127 459.5 337 74.2
Lalb_Chr02g0146401 Lupinus albus HOM05D000880 ORTHO05D007053 2.9e-127 459.1 339 73.5
Lalb_Chr21g0309241 Lupinus albus HOM05D000880 ORTHO05D007053 2.9e-127 459.1 339 73.7
Thhalv10010145m.g Eutrema salsugineum HOM05D000880 ORTHO05D007053 1.9e-126 456.4 336 73.5
Medtr1g088410 Medicago truncatula HOM05D000880 ORTHO05D007053 9.3e-126 454.1 343 73.2
TPR.G33956 Trifolium pratense HOM05D000880 ORTHO05D007053 3.5e-125 452.2 343 72.9
Gohir.D11G119200 Gossypium hirsutum HOM05D000880 ORTHO05D007053 1.3e-124 450.3 325 76.3
Sed0026689 Sechium edule HOM05D000880 ORTHO05D007053 1.3e-124 450.3 339 73.2
Gorai.004G090500 Gossypium raimondii HOM05D000880 ORTHO05D007053 1.8e-124 449.9 338 72.2
Sp5g08620 Schrenkiella parvula HOM05D000880 ORTHO05D007053 1.8e-124 449.9 336 72.0
BcaB01g00245 Brassica carinata HOM05D000880 ORTHO05D007053 3.0e-124 449.1 336 72.0
A09p46740 Brassica napus HOM05D000880 ORTHO05D007053 3.9e-124 448.7 336 72.0
BolC8t50508H Brassica oleracea HOM05D000880 ORTHO05D007053 3.9e-124 448.7 336 72.0
BraA09t40136Z Brassica rapa HOM05D000880 ORTHO05D007053 3.9e-124 448.7 336 72.0
MELO3C026912.2 Cucumis melo HOM05D000880 ORTHO05D007053 3.9e-124 448.7 340 73.5
C08p29070 Brassica napus HOM05D000880 ORTHO05D007053 5.1e-124 448.4 336 71.7
SGA_v2.0_scaffold1G00361 Striga asiatica HOM05D000880 ORTHO05D007053 5.1e-124 448.4 387 65.9
MELO3C015161.2 Cucumis melo HOM05D000880 ORTHO05D007053 8.7e-124 447.6 340 73.2
Nitab4.5_0002433g0080 Nicotiana tabacum HOM05D000880 ORTHO05D007053 8.7e-124 447.6 359 68.5
Gohir.D08G086000 Gossypium hirsutum HOM05D000880 ORTHO05D007053 1.9e-123 446.4 336 72.3
Psat6g165160 Pisum sativum HOM05D000880 ORTHO05D007053 2.5e-123 446.0 338 73.1
arahy.Tifrunner.gnm1.ann1.VZZJ8Q Arachis hypogaea HOM05D000880 ORTHO05D007053 3.3e-123 445.7 366 67.8
CsaV3_1G043050 Cucumis sativus L. HOM05D000880 ORTHO05D007053 3.3e-123 445.7 339 72.9
ClCG03G013010 Citrullus lanatus HOM05D000880 ORTHO05D007053 2.1e-122 443.0 340 73.2
Carub.0005s2034 Capsella rubella HOM05D000880 ORTHO05D007053 4.8e-122 441.8 336 71.4
CARHR163650 Cardamine hirsuta HOM05D000880 ORTHO05D007053 6.2e-122 441.4 336 71.1
AUR62018540 Chenopodium quinoa HOM05D000880 ORTHO05D007053 8.2e-122 441.0 340 71.5
AT3G53760 Arabidopsis thaliana HOM05D000880 ORTHO05D007053 1.8e-121 439.9 336 70.8
HanXRQChr04g0114151 Helianthus annuus HOM05D000880 ORTHO05D007053 3.1e-121 439.1 335 71.6
AL5G34740 Arabidopsis lyrata HOM05D000880 ORTHO05D007053 4.1e-121 438.7 336 70.8
Aa31LG10G9270 Aethionema arabicum HOM05D000880 ORTHO05D007053 1.3e-119 433.7 338 69.2
ECA236G1870 Erigeron canadensis HOM05D000880 ORTHO05D007053 1.3e-119 433.7 335 70.7
HPP92_007056 Vanilla planifolia HOM05D000880 ORTHO05D007053 2.2e-119 433.0 337 70.9
arahy.Tifrunner.gnm1.ann1.JXQ8LX Arachis hypogaea HOM05D000880 ORTHO05D007053 4.2e-118 428.7 390 64.1
BcaC07g39735 Brassica carinata HOM05D000880 ORTHO05D007053 7.2e-118 427.9 336 69.6
Lsat_1_v5_gn_8_164240 Lactuca sativa HOM05D000880 ORTHO05D007053 4.6e-117 425.2 335 69.6
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.3e-116 423.7 307 74.6
Os05g0154500 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D007053 1.8e-116 423.3 336 69.3
ATR0057G121 Amborella trichopoda HOM05D000880 ORTHO05D007053 3.3e-115 419.1 337 69.1
Zm00001eb282720 Zea mays HOM05D000880 ORTHO05D007053 9.7e-115 417.5 335 67.8
CDE01G0629 Ceratophyllum demersum HOM05D000880 ORTHO05D007053 2.6e-112 409.5 339 69.0
Ah.15g093160 Amaranthus hybridus HOM05D000880 ORTHO05D007053 2.2e-111 406.4 336 68.2
SHI15144 Sapria himalayana HOM05D000880 ORTHO05D007053 5.7e-107 391.7 338 63.3
MD11G1309000 Malus domestica HOM05D000880 ORTHO05D007053 4.8e-106 388.7 343 65.6
Lsat_1_v5_gn_9_43261 Lactuca sativa HOM05D000880 ORTHO05D007053 1.3e-103 380.6 336 62.5
Nitab4.5_0001879g0170 Nicotiana tabacum HOM05D000880 ORTHO05D007053 7.2e-102 374.8 331 63.4
Cpa.g.sc9.255 Carica papaya HOM05D000880 ORTHO05D007053 1.0e-100 370.9 332 65.1
Mapoly0009s0235 Marchantia polymorpha HOM05D000880 ORTHO05D007053 3.1e-97 359.4 343 60.1
Hma1.2p1_0491F.1_g164650 Hydrangea macrophylla HOM05D000880 ORTHO05D007053 1.6e-96 357.1 329 64.4
Gohir.A08G076500 Gossypium hirsutum HOM05D000880 ORTHO05D007053 3.5e-96 355.9 337 62.6
ECA247G4025 Erigeron canadensis HOM05D000880 ORTHO05D007053 6.5e-95 351.7 307 65.8
TAR365G0367 Trochodendron aralioides HOM05D000880 ORTHO05D007053 1.6e-93 347.1 229 79.9
AagrBONN_evm.TU.Sc2ySwM_117.410 Anthoceros agrestis HOM05D000880 ORTHO05D007053 6.1e-93 345.1 343 58.6
Pp3c14_20420 Physcomitrium patens HOM05D000880 ORTHO05D007053 2.4e-89 333.2 340 56.8
unitig_32.g10658 Utricularia gibba HOM05D000880 ORTHO05D007053 2.3e-84 316.6 331 55.3
Actinidia24361 Actinidia chinensis HOM05D000880 ORTHO05D007053 6.8e-84 315.1 306 61.1
SMO364G0941 Selaginella moellendorffii HOM05D000880 ORTHO05D007053 4.8e-82 308.9 342 52.6
Lj5g0006803 Lotus japonicus HOM05D000880 ORTHO05D007053 1.9e-78 297.0 331 56.2
BcaB01g00241 Brassica carinata HOM05D000880 ORTHO05D007053 5.7e-75 285.4 331 54.1
PGSC0003DMG400031813 Solanum tuberosum HOM05D000880 ORTHO05D007053 6.3e-74 282.0 180 79.4
HanXRQChr10g0285001 Helianthus annuus HOM05D000880 ORTHO05D007053 3.7e-66 256.1 259 59.8
SEGI_07599 Sequoiadendron giganteum HOM05D000880 ORTHO05D007053 1.2e-48 198.0 164 62.2
Lj5g0011129 Lotus japonicus HOM05D000880 ORTHO05D007053 2.6e-43 180.3 141 72.3
SEGI_35866 Sequoiadendron giganteum HOM05D000880 ORTHO05D007053 1.6e-37 161.0 143 63.6
PRCOL_00000976 Prasinoderma coloniale HOM05D000880 ORTHO05D007053 6.8e-36 155.6 345 32.5
PGR044G1585 Punica granatum HOM05D000880 ORTHO05D017463 8.9e-36 155.2 125 61.6
Lj9C128T17 Lonicera japonica HOM05D000880 ORTHO05D007053 2.2e-34 150.6 162 61.1
MCO03G526 Micromonas commoda HOM05D000880 ORTHO05D007053 8.7e-31 138.7 349 31.8
arahy.Tifrunner.gnm1.ann1.RW9HBG Arachis hypogaea HOM05D000997 ORTHO05D017463 2.5e-30 137.1 174 50.0
arahy.Tifrunner.gnm1.ann1.67JHEV Arachis hypogaea HOM05D000880 ORTHO05D017463 9.0e-28 128.6 174 46.0
Oeu040636.1 Olea europaea HOM05D000880 ORTHO05D017463 9.0e-28 128.6 107 62.6
Cre01.g019150 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D007053 5.8e-27 125.9 332 31.0
PGR044G0168 Punica granatum HOM05D000880 ORTHO05D007053 8.7e-23 112.1 313 35.1
arahy.Tifrunner.gnm1.ann1.IY1UIH Arachis hypogaea HOM05D000880 ORTHO05D017463 3.6e-21 106.7 140 45.7
Actinidia21204 Actinidia chinensis HOM05D000880 ORTHO05D007053 1.8e-20 104.4 122 53.3
CBR_g8603 Chara braunii HOM05D000880 ORTHO05D007053 3.2e-17 93.6 69 69.6
HanXRQChr10g0285011 Helianthus annuus HOM05D000880 ORTHO05D007053 7.4e-14 82.4 61 68.9
CBR_g8601 Chara braunii HOM05D000880 ORTHO05D007053 2.8e-13 80.5 80 50.0
arahy.Tifrunner.gnm1.ann1.P5X9YU Arachis hypogaea HOM05D000997 ORTHO05D000828 5.8e-11 72.8 75 56.0
CANSAT64G2519 Cannabis sativa HOM05D004581 ORTHO05D006211 3.9e-07 60.1 330 24.8
Potri.006G194200 Populus trichocarpa HOM05D004581 ORTHO05D006211 3.9e-07 60.1 217 28.6
Prupe.7G080400 Prunus persica HOM05D004581 ORTHO05D006211 8.7e-07 58.9 239 25.5
SMO361G0655 Selaginella moellendorffii HOM05D005083 ORTHO05D006310 8.7e-07 58.9 194 23.7
SEGI_29727 Sequoiadendron giganteum HOM05D005083 ORTHO05D006310 1.1e-06 58.5 182 24.2
Cfa026615 Carpinus fangiana HOM05D005083 ORTHO05D006310 1.5e-06 58.2 295 23.4
Sc25g0005070 Simmondsia chinensis HOM05D004581 ORTHO05D006211 1.9e-06 57.8 102 33.3
Cfa020147 Carpinus fangiana HOM05D004581 ORTHO05D006211 2.5e-06 57.4 232 27.6
Lj1g0024119 Lotus japonicus HOM05D004581 ORTHO05D006211 2.5e-06 57.4 239 25.9
Atru.chr8.1150 Acer truncatum HOM05D004581 ORTHO05D006211 3.3e-06 57.0 232 27.6
BraA02t04889Z Brassica rapa HOM05D004581 ORTHO05D006211 3.3e-06 57.0 102 36.3
Haze_20018 Corylus avellana HOM05D004581 ORTHO05D006211 3.3e-06 57.0 232 27.2
Mapoly0099s0003 Marchantia polymorpha HOM05D004148 ORTHO05D004709 3.3e-06 57.0 103 35.0
AagrBONN_evm.TU.Sc2ySwM_228.1094 Anthoceros agrestis HOM05D005083 ORTHO05D006310 4.3e-06 56.6 207 22.7
MSTRG.19916 Avicennia marina HOM05D004581 ORTHO05D006211 4.3e-06 56.6 102 36.3
CSS0001135 Camellia sinensis var. sinensis HOM05D004581 ORTHO05D006211 4.3e-06 56.6 232 26.7
Ca_08535_v3 Cicer arietinum L. HOM05D004581 ORTHO05D006211 4.3e-06 56.6 239 26.4
arahy.Tifrunner.gnm1.ann1.D5VDWJ Arachis hypogaea HOM05D000880 ORTHO05D007053 5.7e-06 56.2 32 81.2
EL10Ac2g03990 Beta vulgaris HOM05D004581 ORTHO05D006211 5.7e-06 56.2 103 35.9
RcHm_v2.0_Chr3g0479271 Rosa chinensis HOM05D004581 ORTHO05D006211 5.7e-06 56.2 239 25.1
SMO356G0383 Selaginella moellendorffii HOM05D004581 ORTHO05D006211 5.7e-06 56.2 229 24.9
THA.LOC104809935 Tarenaya hassleriana HOM05D004581 ORTHO05D006211 5.7e-06 56.2 102 35.3
MD14G1054400 Malus domestica HOM05D004581 ORTHO05D006211 7.4e-06 55.8 242 26.4
Medtr7g093560 Medicago truncatula HOM05D004581 ORTHO05D006211 7.4e-06 55.8 239 26.4
Potri.016G059900 Populus trichocarpa HOM05D004581 ORTHO05D006211 7.4e-06 55.8 219 26.9
Sed0021834 Sechium edule HOM05D004581 ORTHO05D006211 7.4e-06 55.8 232 25.9
Ah.13g075710 Amaranthus hybridus HOM05D004581 ORTHO05D006211 9.6e-06 55.5 102 34.3
C02p02810 Brassica napus HOM05D004581 ORTHO05D006211 9.6e-06 55.5 102 35.3
BolC2t06246H Brassica oleracea HOM05D004581 ORTHO05D006211 9.6e-06 55.5 102 35.3
Duzib093G1426 Durio zibethinus HOM05D004581 ORTHO05D006211 9.6e-06 55.5 232 27.2
Sabra16G0062700 Salix brachista HOM05D004581 ORTHO05D006211 9.6e-06 55.5 219 27.4
GSVIVG01033474001 Vitis vinifera HOM05D004581 ORTHO05D006211 9.6e-06 55.5 102 34.3


User provided reference genes

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