Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0027663 Lotus japonicus HOM05D006809 ORTHO05D008609 3.3e-213 745.0 435 100.0
Ca_02916_v3 Cicer arietinum L. HOM05D006809 ORTHO05D008609 9.5e-184 647.1 429 86.7
Medtr2g060520 Medicago truncatula HOM05D006809 ORTHO05D008609 4.1e-179 631.7 431 81.9
Glyma.06G205000 Glycine max HOM05D006809 ORTHO05D008609 5.6e-176 621.3 433 85.5
Lalb_Chr07g0189231 Lupinus albus HOM05D006809 ORTHO05D008609 5.1e-169 598.2 436 81.7
Cfa019358 Carpinus fangiana HOM05D006809 ORTHO05D008609 9.5e-168 594.0 433 78.5
CiPaw.12G009200 Carya illinoinensis HOM05D006809 ORTHO05D008609 6.2e-167 591.3 433 78.1
arahy.Tifrunner.gnm1.ann1.23QZVI Arachis hypogaea HOM05D006809 ORTHO05D008609 1.1e-166 590.5 454 80.2
Hma1.2p1_0060F.1_g032880 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 4.0e-166 588.6 432 78.2
QL10p020149 Quercus lobata HOM05D006809 ORTHO05D008609 2.0e-165 586.3 437 76.2
Manes.14G087700 Manihot esculenta HOM05D006809 ORTHO05D008609 2.2e-164 582.8 437 77.3
Thecc.03G104800 Theobroma cacao HOM05D006809 ORTHO05D008609 1.9e-163 579.7 434 77.2
Actinidia04809 Actinidia chinensis HOM05D006809 ORTHO05D008609 2.7e-162 575.9 438 75.1
Gohir.A07G067300 Gossypium hirsutum HOM05D006809 ORTHO05D008609 6.0e-162 574.7 434 76.3
Duzib205G0618 Durio zibethinus HOM05D006809 ORTHO05D008609 5.1e-161 571.6 438 75.6
COL.COLO4_24315 Corchorus olitorius HOM05D006809 ORTHO05D008609 1.1e-160 570.5 431 75.6
TAR629G2676 Trochodendron aralioides HOM05D006809 ORTHO05D008609 1.5e-160 570.1 433 75.3
Nn4g23476 Nelumbo nucifera HOM05D006809 ORTHO05D008609 2.5e-160 569.3 437 75.1
Gohir.D07G071900 Gossypium hirsutum HOM05D006809 ORTHO05D008609 3.3e-160 568.9 434 75.3
Gorai.001G076000 Gossypium raimondii HOM05D006809 ORTHO05D008609 3.3e-160 568.9 434 75.1
Aqoxy3G03648 Aquilegia oxysepala HOM05D006809 ORTHO05D008609 5.6e-160 568.2 433 78.8
TWI81G0697 Tripterygium wilfordii HOM05D006809 ORTHO05D008609 1.6e-159 566.6 440 74.1
CSS0043969 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 2.8e-159 565.8 445 73.7
HanXRQChr05g0154271 Helianthus annuus HOM05D006809 ORTHO05D008609 1.4e-158 563.5 437 73.7
PSO017G0895 Papaver somniferum HOM05D006809 ORTHO05D008609 2.4e-158 562.8 435 74.9
CANSAT11G1370 Cannabis sativa HOM05D006809 ORTHO05D008609 2.0e-157 559.7 437 73.5
PSO478G2035 Papaver somniferum HOM05D006809 ORTHO05D008609 2.0e-157 559.7 435 74.7
Cpa.g.sc94.80 Carica papaya HOM05D006809 ORTHO05D008609 3.4e-157 558.9 426 75.8
VMungo1309G1606 Vigna mungo HOM05D006809 ORTHO05D008609 2.9e-156 555.8 391 85.2
CsaV3_1G006160 Cucumis sativus L. HOM05D006809 ORTHO05D008609 3.8e-156 555.4 433 73.0
Dinv22761 Davidia involucrata HOM05D006809 ORTHO05D008609 3.8e-156 555.4 427 75.4
Ciclev10023968m.g Citrus clementina HOM05D006809 ORTHO05D008609 3.2e-155 552.4 469 70.4
Sc12g0007330 Simmondsia chinensis HOM05D006809 ORTHO05D008609 9.2e-155 550.8 440 70.7
MELO3C002045.2 Cucumis melo HOM05D006809 ORTHO05D008609 2.7e-154 549.3 433 72.7
MSTRG.11330 Avicennia marina HOM05D006809 ORTHO05D008609 3.0e-153 545.8 435 72.2
Lsat_1_v5_gn_5_23620 Lactuca sativa HOM05D006809 ORTHO05D008609 8.7e-153 544.3 438 71.7
RcHm_v2.0_Chr7g0183371 Rosa chinensis HOM05D006809 ORTHO05D008609 8.7e-153 544.3 436 73.6
MD06G1203600 Malus domestica HOM05D006809 ORTHO05D008609 1.9e-152 543.1 436 67.7
DCAR_010163 Daucus carota HOM05D006809 ORTHO05D008609 2.1e-151 539.7 444 71.2
ECA246G1387 Erigeron canadensis HOM05D006809 ORTHO05D008609 2.1e-151 539.7 437 65.2
Cc11_g04700 Coffea canephora HOM05D006809 ORTHO05D008609 1.1e-150 537.3 454 60.6
FAN13G1268 Fragaria x ananassa HOM05D006809 ORTHO05D008609 1.8e-150 536.6 436 72.0
Eucgr.K02539 Eucalyptus grandis HOM05D006809 ORTHO05D008609 3.1e-150 535.8 437 71.2
FAN18G0725 Fragaria x ananassa HOM05D006809 ORTHO05D008609 3.1e-150 535.8 433 72.7
GSVIVG01008127001 Vitis vinifera HOM05D006809 ORTHO05D008609 9.0e-150 534.3 438 72.8
PGR044G2265 Punica granatum HOM05D006809 ORTHO05D008609 2.0e-149 533.1 435 70.6
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 3.4e-149 532.3 437 73.5
CSS0020904 Camellia sinensis var. sinensis HOM05D006809 ORTHO05D008609 5.8e-149 531.6 405 75.3
FAN08G0740 Fragaria x ananassa HOM05D006809 ORTHO05D008609 4.2e-147 525.4 457 59.3
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 3.5e-146 522.3 431 69.1
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 7.3e-144 514.6 448 68.8
Phvul.009G203000 Phaseolus vulgaris HOM05D006809 ORTHO05D008609 8.1e-143 511.1 332 82.8
Nitab4.5_0001723g0010 Nicotiana tabacum HOM05D006809 ORTHO05D008609 6.9e-142 508.1 467 65.1
Sed0027469 Sechium edule HOM05D006809 ORTHO05D008609 6.9e-142 508.1 405 72.6
Lj5A134T75 Lonicera japonica HOM05D006809 ORTHO05D008609 4.5e-141 505.4 436 68.8
Oeu014424.1 Olea europaea HOM05D006809 ORTHO05D008609 1.1e-139 500.7 406 72.4
Rhsim08G0143500 Rhododendron simsii HOM05D006809 ORTHO05D008609 1.6e-138 496.9 602 46.8
vmacro16181 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 1.0e-137 494.2 557 49.4
CARHR274620 Cardamine hirsuta HOM05D006809 ORTHO05D008609 3.0e-137 492.7 437 67.5
ATR0827G115 Amborella trichopoda HOM05D006809 ORTHO05D008609 2.8e-135 486.1 493 59.6
Aa31LG11G2360 Aethionema arabicum HOM05D006809 ORTHO05D008609 4.8e-135 485.3 434 57.8
EL10Ac5g11165 Beta vulgaris HOM05D006809 ORTHO05D008609 2.4e-134 483.0 471 54.8
Carub.0008s2163 Capsella rubella HOM05D006809 ORTHO05D008609 1.2e-133 480.7 436 66.7
Sp2g24250 Schrenkiella parvula HOM05D006809 ORTHO05D008609 3.4e-133 479.2 437 64.5
SalBow5G3990 Salvia bowleyana HOM05D006809 ORTHO05D008609 1.3e-132 477.2 438 66.4
Thhalv10004278m.g Eutrema salsugineum HOM05D006809 ORTHO05D008609 1.7e-132 476.9 429 67.4
AT5G60940 Arabidopsis thaliana HOM05D006809 ORTHO05D008609 2.9e-132 476.1 436 64.4
Mapoly0118s0024 Marchantia polymorpha HOM05D006809 ORTHO05D008609 1.4e-131 473.8 432 63.4
Hund09945 Selenicereus undatus HOM05D006809 ORTHO05D008609 2.1e-130 469.9 430 57.4
AagrBONN_evm.TU.Sc2ySwM_117.1929 Anthoceros agrestis HOM05D006809 ORTHO05D008609 2.3e-129 466.5 434 53.2
BcaC06g33207 Brassica carinata HOM05D006809 ORTHO05D008609 1.1e-128 464.2 446 64.6
Os03g0754900 Oryza sativa ssp. japonica HOM05D006809 ORTHO05D008609 4.3e-128 462.2 437 64.1
Pp3c18_4200 Physcomitrium patens HOM05D006809 ORTHO05D008609 9.6e-128 461.1 424 55.0
BcaNung06908 Brassica carinata HOM05D006809 ORTHO05D008609 6.2e-127 458.4 436 64.4
Zm00001eb057630 Zea mays HOM05D006809 ORTHO05D008609 1.8e-126 456.8 430 63.5
BolC7t44995H Brassica oleracea HOM05D006809 ORTHO05D008609 4.0e-126 455.7 440 64.3
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 5.3e-126 455.3 395 59.0
AL8G37560 Arabidopsis lyrata HOM05D006809 ORTHO05D008609 5.3e-126 455.3 436 63.5
C07p44720 Brassica napus HOM05D006809 ORTHO05D008609 6.9e-126 454.9 440 64.3
FvH4_5g13570 Fragaria vesca HOM05D006809 ORTHO05D008609 1.6e-122 443.7 333 77.5
Hma1.2p1_0060F.1_g032870 Hydrangea macrophylla HOM05D006809 ORTHO05D008609 1.6e-122 443.7 442 56.1
Nitab4.5_0001797g0090 Nicotiana tabacum HOM05D006809 ORTHO05D008609 1.3e-121 440.7 465 58.7
BraA03t13789Z Brassica rapa HOM05D006809 ORTHO05D008609 8.7e-121 438.0 437 54.0
A03p46650 Brassica napus HOM05D006809 ORTHO05D008609 1.5e-120 437.2 437 53.8
AUR62032115 Chenopodium quinoa HOM05D006809 ORTHO05D008609 5.7e-120 435.3 451 57.4
SGA_v2.0_scaffold313G48281 Striga asiatica HOM05D006809 ORTHO05D008609 8.2e-119 431.4 459 50.5
Prupe.5G207700 Prunus persica HOM05D006809 ORTHO05D008609 1.5e-117 427.2 386 67.9
Thecc.K0005900 Theobroma cacao HOM05D006809 ORTHO05D008609 2.9e-108 396.4 264 74.2
Atru.chr9.503 Acer truncatum HOM05D006809 ORTHO05D008609 2.0e-104 383.6 438 60.7
AUR62039658 Chenopodium quinoa HOM05D006809 ORTHO05D008609 2.6e-101 373.2 437 52.9
SMO358G0618 Selaginella moellendorffii HOM05D006809 ORTHO05D008609 1.3e-100 370.9 430 56.3
TPR.G23013 Trifolium pratense HOM05D007385 ORTHO05D009349 6.8e-89 332.0 292 74.7
vmacro17627 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 6.8e-81 305.4 323 51.7
CDE10G1159 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 2.0e-72 277.3 267 55.1
Psat1g128360 Pisum sativum HOM05D006809 ORTHO05D008609 2.6e-72 276.9 220 85.9
Peaxi162Scf01223g00014 Petunia axillaris HOM05D006809 ORTHO05D008609 4.4e-64 249.6 231 58.9
Ah.11g047540 Amaranthus hybridus HOM05D006809 ORTHO05D008609 5.8e-56 222.6 405 37.5
Solyc12g038527.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 1.6e-53 214.5 132 75.0
vmacro17626 Vaccinium macrocarpon HOM05D006809 ORTHO05D008609 2.7e-53 213.8 184 69.0
Medtr6g088180 Medicago truncatula HOM05D006809 ORTHO05D008609 8.4e-47 192.2 182 61.5
Glyma.04G160301 Glycine max HOM05D006809 ORTHO05D008609 2.4e-46 190.7 147 91.8
PGSC0003DMG400023259 Solanum tuberosum HOM05D006809 ORTHO05D008609 6.6e-44 182.6 160 76.2
Haze_26316 Corylus avellana HOM05D006809 ORTHO05D008609 1.1e-41 175.3 348 34.8
Psat6g135880 Pisum sativum HOM05D006809 ORTHO05D008609 2.4e-41 174.1 107 79.4
CBR_g41384 Chara braunii HOM05D006809 ORTHO05D000002 1.0e-36 158.7 184 64.1
arahy.Tifrunner.gnm1.ann1.BJ4A4M Arachis hypogaea HOM05D006809 ORTHO05D008609 7.1e-30 136.0 100 75.0
MD14G1214700 Malus domestica HOM05D006809 ORTHO05D008609 2.4e-25 120.9 119 59.7
MD14G1214500 Malus domestica HOM05D006809 ORTHO05D008609 3.1e-25 120.6 87 73.6
Medtr2g060475 Medicago truncatula HOM05D006809 ORTHO05D008609 3.1e-25 120.6 148 42.6
CDE10G1173 Ceratophyllum demersum HOM05D006809 ORTHO05D008609 1.5e-24 118.2 116 48.3
Solyc12g038523.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 3.5e-21 107.1 101 58.4
Solyc12g038550.1 Solanum lycopersicum HOM05D006809 ORTHO05D008609 7.9e-21 105.9 144 36.8
SEGI_19563 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 9.6e-19 99.0 61 73.8
SEGI_17180 Sequoiadendron giganteum HOM05D006809 ORTHO05D008609 2.1e-18 97.8 72 61.1
CBR_g71889 Chara braunii HOM05D006809 ORTHO05D008609 2.4e-17 94.4 77 59.7
CAN.G131.10 Capsicum annuum HOM05D006809 ORTHO05D008609 3.1e-17 94.0 130 44.6
Psat1g128400 Pisum sativum HOM05D006809 ORTHO05D008609 1.0e-15 89.0 60 78.3
Thecc.03G286100 Theobroma cacao HOM05D006809 ORTHO05D008609 1.6e-13 81.6 50 76.0
MD14G1214400 Malus domestica HOM05D006809 ORTHO05D008609 1.0e-12 79.0 45 66.7
Medtr2g061440 Medicago truncatula HOM05D002527 ORTHO05D001267 1.6e-10 71.6 40 82.5
DCAR_024291 Daucus carota HOM05D003335 ORTHO05D003853 1.1e-06 58.9 180 22.8
Migut.I00803 Erythranthe guttata HOM05D004669 ORTHO05D005767 1.9e-06 58.2 108 31.5
RcHm_v2.0_Chr7g0235181 Rosa chinensis HOM05D000921 ORTHO05D004782 1.9e-06 58.2 184 28.3
arahy.Tifrunner.gnm1.ann1.S3QGNL Arachis hypogaea HOM05D000640 ORTHO05D008148 2.5e-06 57.8 77 50.6
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 2.5e-06 57.8 215 23.7
Prupe.1G534000 Prunus persica HOM05D000921 ORTHO05D004782 2.5e-06 57.8 184 28.3
vmacro21345 Vaccinium macrocarpon HOM05D000921 ORTHO05D004782 2.5e-06 57.8 190 25.3
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 3.2e-06 57.4 99 31.3
FvH4_5g34530 Fragaria vesca HOM05D000921 ORTHO05D004782 3.2e-06 57.4 184 27.2
FAN08G1747 Fragaria x ananassa HOM05D000921 ORTHO05D004782 3.2e-06 57.4 184 27.2
FAN18G1361 Fragaria x ananassa HOM05D000921 ORTHO05D004782 3.2e-06 57.4 184 27.2
Actinidia20838 Actinidia chinensis HOM05D003335 ORTHO05D003853 4.2e-06 57.0 180 23.9
CAN.G220.75 Capsicum annuum HOM05D003335 ORTHO05D003853 7.2e-06 56.2 180 21.7
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 9.3e-06 55.8 97 27.8
MD15G1387600 Malus domestica HOM05D000921 ORTHO05D004782 9.3e-06 55.8 184 27.7
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 9.3e-06 55.8 98 26.5
Rhsim06G0071200 Rhododendron simsii HOM05D000921 ORTHO05D004782 9.3e-06 55.8 190 24.7


User provided reference genes

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