Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 8.1e-166 587.0 301 100.0
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 5.1e-112 408.3 303 75.2
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 1.1e-111 407.1 303 74.9
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 9.7e-111 404.1 304 73.7
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 1.2e-108 397.1 294 74.1
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 1.5e-108 396.7 296 75.0
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 5.9e-108 394.8 300 73.7
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 2.6e-103 379.4 311 66.9
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 3.1e-101 372.5 304 67.1
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 1.5e-100 370.2 282 72.0
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 1.3e-99 367.1 300 69.0
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 4.2e-98 362.1 238 77.3
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.2e-98 362.1 292 68.8
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 9.4e-98 360.9 268 70.9
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.2e-97 360.5 307 64.5
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 1.6e-97 360.1 310 64.8
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 3.0e-96 355.9 303 64.7
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 3.0e-96 355.9 296 67.6
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 5.7e-95 351.7 238 75.6
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 1.3e-94 350.5 271 68.6
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.8e-94 349.4 300 62.7
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.8e-94 349.4 296 66.2
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 3.7e-94 349.0 233 78.1
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 3.7e-94 349.0 316 64.2
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 4.8e-94 348.6 293 65.5
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 2.4e-93 346.3 241 74.7
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 3.1e-93 345.9 298 65.4
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 3.1e-93 345.9 294 65.6
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 5.3e-93 345.1 289 65.7
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 2.0e-92 343.2 298 63.8
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 2.6e-92 342.8 309 63.1
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 3.5e-92 342.4 329 60.5
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 7.7e-92 341.3 278 66.2
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 2.2e-91 339.7 286 65.0
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 2.2e-91 339.7 320 60.9
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 2.2e-91 339.7 235 74.0
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 2.9e-91 339.3 286 65.0
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 5.0e-91 338.6 243 72.0
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 8.5e-91 337.8 320 60.0
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 1.5e-90 337.0 287 64.5
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 5.5e-90 335.1 290 64.5
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 1.2e-89 334.0 241 72.6
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.2e-89 334.0 317 60.6
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 1.6e-89 333.6 245 71.4
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 2.1e-89 333.2 291 62.2
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 2.7e-89 332.8 289 61.6
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 4.7e-89 332.0 285 62.8
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 4.7e-89 332.0 228 74.1
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 4.7e-89 332.0 303 62.0
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 6.1e-89 331.6 291 61.5
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 1.4e-88 330.5 291 61.2
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.4e-88 330.5 237 71.3
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 2.3e-88 329.7 241 72.2
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 4.0e-88 328.9 292 62.0
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 4.0e-88 328.9 255 65.9
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 4.0e-88 328.9 295 63.1
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 6.7e-88 328.2 227 73.6
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 6.7e-88 328.2 297 60.9
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 1.2e-87 327.4 238 71.4
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 1.5e-87 327.0 296 62.2
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 2.6e-87 326.2 291 62.9
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 2.6e-87 326.2 241 69.3
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 9.7e-87 324.3 294 61.2
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.3e-86 323.9 256 68.0
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 2.2e-86 323.2 289 60.2
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.8e-86 322.8 232 72.4
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.1e-85 320.9 224 71.9
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 1.1e-85 320.9 302 60.3
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.1e-85 320.9 240 70.4
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 1.1e-85 320.9 216 75.0
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.4e-85 320.5 240 70.4
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.8e-85 320.1 233 68.7
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 3.1e-85 319.3 304 60.9
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 4.1e-85 318.9 224 71.4
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 4.1e-85 318.9 292 60.3
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 7.0e-85 318.2 299 58.9
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 9.1e-85 317.8 289 60.6
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.2e-84 317.4 284 61.6
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.2e-84 317.4 303 60.7
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 3.5e-84 315.8 280 63.2
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 4.5e-84 315.5 244 67.2
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 5.9e-84 315.1 242 66.9
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.7e-83 313.5 251 65.7
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 2.9e-83 312.8 277 60.6
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.8e-83 312.4 241 69.3
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 9.4e-82 307.8 408 48.5
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 1.0e-80 304.3 267 61.4
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 4.0e-80 302.4 301 58.8
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 1.2e-79 300.8 302 58.6
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 9.8e-79 297.7 290 57.6
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 3.7e-78 295.8 280 56.1
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.8e-77 293.5 220 67.7
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.8e-77 293.5 238 63.4
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 4.1e-77 292.4 299 58.2
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 5.9e-76 288.5 231 66.2
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 3.3e-74 282.7 274 57.3
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 9.5e-74 281.2 276 56.9
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.2e-73 280.8 287 56.4
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 2.0e-71 273.5 241 61.8
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 1.3e-70 270.8 275 56.0
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 4.1e-69 265.8 275 54.5
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.9e-67 259.6 210 63.8
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 6.6e-67 258.5 231 61.0
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.5e-66 257.3 231 61.0
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 2.1e-65 253.4 206 65.0
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 4.0e-64 249.2 204 64.7
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 4.0e-64 249.2 204 64.7
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 4.4e-63 245.7 252 54.4
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 4.9e-62 242.3 219 58.4
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 4.1e-61 239.2 219 57.1
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 2.7e-60 236.5 183 70.5
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 6.6e-59 231.9 211 57.3
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 8.6e-59 231.5 213 58.7
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 1.2e-57 227.6 220 59.5
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 1.4e-56 224.2 208 58.7
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.4e-55 219.5 170 69.4
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 9.8e-55 218.0 201 60.2
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.4e-53 214.2 213 53.5
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 1.9e-53 213.8 184 65.2
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.7e-52 209.9 217 58.1
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.5e-50 201.4 170 65.3
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 8.7e-35 151.8 217 41.5
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.9e-34 150.6 121 69.4
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 9.6e-34 148.3 207 42.0
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 3.8e-30 136.3 189 46.6
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 5.4e-29 132.5 112 60.7
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.0e-27 128.3 209 34.4
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 7.1e-21 105.5 67 77.6
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 3.9e-19 99.8 69 68.1
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.3e-17 94.7 85 58.8
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 4.2e-13 79.7 48 77.1
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 1.0e-11 75.1 83 56.6
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.3e-11 74.7 46 78.3
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 5.6e-10 69.3 78 53.8
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 1.8e-08 64.3 37 81.1
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.4e-08 63.9 48 62.5
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 5.3e-08 62.8 47 68.1
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 1.5e-07 61.2 71 53.5
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 2.0e-07 60.8 44 72.7


User provided reference genes

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