Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 1.5e-150 536.2 271 100.0
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 2.4e-132 475.7 270 89.3
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 4.4e-131 471.5 270 88.5
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 1.9e-129 466.1 269 87.4
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.9e-129 466.1 268 88.1
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 1.2e-128 463.4 269 87.7
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 2.1e-128 462.6 270 87.0
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 2.7e-128 462.2 265 87.9
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 4.3e-126 454.9 271 85.6
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 3.1e-124 448.7 270 83.3
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 2.6e-123 445.7 273 83.2
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 6.7e-119 431.0 341 68.9
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 4.3e-118 428.3 266 79.7
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 8.1e-117 424.1 269 78.4
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.4e-115 418.7 268 77.2
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 5.8e-115 417.9 269 77.7
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.7e-114 416.4 272 75.7
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 1.7e-114 416.4 271 76.4
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 2.9e-114 415.6 273 75.5
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 2.9e-114 415.6 271 79.7
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 1.1e-113 413.7 269 77.0
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 1.4e-113 413.3 270 77.0
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 2.4e-113 412.5 269 76.6
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 7.1e-113 411.0 271 75.3
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 7.1e-113 411.0 269 75.5
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 9.3e-113 410.6 273 79.1
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 9.3e-113 410.6 269 75.5
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 1.2e-112 410.2 269 75.8
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 3.5e-112 408.7 271 75.6
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 4.6e-112 408.3 269 75.8
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 6.0e-112 407.9 270 75.6
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 6.0e-112 407.9 269 75.1
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 7.9e-112 407.5 271 73.8
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 7.9e-112 407.5 272 75.0
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 1.0e-111 407.1 273 74.4
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 1.8e-111 406.4 269 75.1
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.8e-111 406.4 271 73.8
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 2.3e-111 406.0 271 74.5
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.9e-111 405.2 270 75.6
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 3.9e-111 405.2 269 75.1
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 3.9e-111 405.2 271 73.4
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.1e-111 404.8 271 74.9
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 8.7e-111 404.1 273 73.3
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 8.7e-111 404.1 270 74.1
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 1.5e-110 403.3 272 73.2
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 2.5e-110 402.5 273 73.3
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 3.3e-110 402.1 272 73.2
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 5.6e-110 401.4 270 75.6
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 7.4e-110 401.0 269 74.0
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 9.6e-110 400.6 273 75.5
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 2.1e-109 399.4 272 73.5
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 2.1e-109 399.4 271 75.3
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.8e-109 399.1 269 73.2
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.8e-109 399.1 269 73.2
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 1.1e-108 397.1 271 73.4
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 1.4e-108 396.7 297 70.0
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.3e-108 394.8 269 72.5
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.3e-108 394.8 271 73.1
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 5.3e-108 394.8 271 73.1
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 6.9e-108 394.4 269 72.5
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 9.0e-108 394.0 286 69.9
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 9.0e-108 394.0 279 72.0
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.2e-107 393.7 270 73.3
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.5e-107 393.3 271 72.7
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 1.5e-107 393.3 281 71.5
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 2.0e-107 392.9 272 73.2
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.0e-107 392.9 269 72.1
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 2.0e-107 392.9 269 72.1
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 2.0e-107 392.9 271 75.6
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.4e-107 392.1 269 72.9
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 3.4e-107 392.1 282 70.6
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.3e-106 390.2 269 72.5
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 1.3e-106 390.2 271 72.0
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 4.9e-106 388.3 269 72.1
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.1e-105 387.1 268 71.3
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 1.4e-105 386.7 271 72.3
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 5.5e-105 384.8 267 71.9
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 1.2e-104 383.6 266 73.7
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 1.6e-104 383.3 268 72.0
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 2.1e-104 382.9 271 71.2
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 2.1e-104 382.9 271 71.2
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 3.5e-104 382.1 268 71.6
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 6.0e-104 381.3 266 72.9
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 1.8e-103 379.8 269 72.1
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 1.8e-103 379.8 297 65.7
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 3.0e-103 379.0 271 69.4
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 1.5e-102 376.7 268 71.6
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 1.9e-102 376.3 271 72.0
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 7.4e-102 374.4 266 72.2
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 1.6e-101 373.2 270 70.0
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 2.2e-101 372.9 270 68.9
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 2.8e-101 372.5 252 73.0
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 3.7e-101 372.1 255 73.7
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 3.7e-101 372.1 271 68.3
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 6.3e-101 371.3 269 69.5
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 6.3e-101 371.3 271 70.1
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 6.3e-101 371.3 291 63.9
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 1.1e-100 370.5 328 60.4
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.4e-100 369.4 260 71.9
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 6.9e-100 367.9 266 69.2
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 1.5e-99 366.7 304 63.8
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 1.5e-99 366.7 304 63.8
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 2.6e-99 365.9 271 68.3
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 2.9e-98 362.5 235 76.6
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 5.0e-98 361.7 268 70.1
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 6.5e-98 361.3 277 68.2
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.5e-97 359.4 285 66.0
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 3.2e-97 359.0 274 67.9
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 1.2e-96 357.1 268 69.8
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 2.1e-96 356.3 271 68.3
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 2.7e-96 355.9 269 68.8
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 6.1e-96 354.8 269 68.8
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 3.0e-95 352.4 268 69.0
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 5.1e-95 351.7 277 66.1
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 6.7e-95 351.3 319 59.6
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 4.8e-93 345.1 277 66.1
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 4.8e-93 345.1 232 72.4
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 3.1e-92 342.4 232 72.4
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 2.9e-90 335.9 234 71.8
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 8.5e-90 334.3 330 57.0
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 9.4e-89 330.9 234 70.9
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 6.1e-88 328.2 278 66.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.3e-87 326.2 270 63.3
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 3.9e-87 325.5 264 64.8
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 6.7e-87 324.7 226 72.6
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 7.4e-86 321.2 230 71.3
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.7e-86 320.9 230 70.4
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 1.4e-84 317.0 274 63.9
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 1.8e-84 316.6 262 64.1
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 5.3e-84 315.1 358 52.5
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 6.3e-77 291.6 271 60.5
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 6.3e-77 291.6 227 67.0
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.4e-76 290.4 283 57.2
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 4.1e-76 288.9 267 56.6
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 6.5e-74 281.6 336 49.1
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 1.1e-73 280.8 228 64.9
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 1.0e-71 274.2 172 80.8
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 5.7e-70 268.5 229 61.6
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 7.5e-70 268.1 176 78.4
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 1.1e-68 264.2 173 72.8
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.1e-68 262.3 267 55.8
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 3.8e-66 255.8 270 52.6
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 1.0e-63 247.7 227 58.6
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 4.4e-62 242.3 201 65.2
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.3e-61 240.7 269 49.8
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 1.7e-61 240.4 180 69.4
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 6.3e-61 238.4 263 52.1
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 5.4e-60 235.3 260 50.0
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 7.0e-60 235.0 260 48.8
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.8e-58 229.2 175 65.1
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 4.2e-57 225.7 161 68.9
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.4e-55 220.7 160 68.1
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.4e-55 220.7 161 68.3
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 9.2e-52 208.0 151 68.2
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 9.2e-52 208.0 131 77.1
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 1.6e-51 207.2 257 50.2
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 5.9e-51 205.3 169 65.7
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 8.0e-48 194.9 213 54.0
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 5.8e-46 188.7 272 44.9
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 1.4e-44 184.1 151 64.9
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 1.3e-42 177.6 202 51.0
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 2.3e-42 176.8 125 68.8
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 1.4e-39 167.5 129 65.9
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.6e-38 163.3 230 42.2
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.1e-36 156.0 139 61.2
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.0e-34 149.8 181 47.0
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 1.5e-33 147.5 271 37.6
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.3e-33 146.4 161 51.6
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 4.6e-27 125.9 91 70.3
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 2.3e-26 123.6 88 72.7
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 5.6e-25 119.0 144 50.0
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 1.8e-23 114.0 74 73.0
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 3.8e-21 106.3 65 76.9
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 2.1e-19 100.5 289 31.5
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 7.8e-19 98.6 74 66.2
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 7.3e-17 92.0 68 67.6
CSS0027227 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 3.9e-10 69.7 138 37.7
HPP92_019650 Vanilla planifolia HOM05D001715 ORTHO05D004824 5.6e-09 65.9 175 32.6
SEGI_06119 Sequoiadendron giganteum HOM05D001715 ORTHO05D000497 3.6e-08 63.2 41 70.7
CSS0014250 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 1.4e-07 61.2 34 88.2
CSS0016932 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 2.4e-07 60.5 41 65.9
Medtr3g063430 Medicago truncatula HOM05D001715 ORTHO05D259122 4.0e-07 59.7 38 73.7


User provided reference genes

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