Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019785 Lotus japonicus HOM05D005783 ORTHO05D007042 8.4e-54 213.4 105 100.0
MELO3C012871.2 Cucumis melo HOM05D005783 ORTHO05D007042 7.7e-31 137.1 67 95.5
Glyma.19G165900 Glycine max HOM05D005783 ORTHO05D007042 2.9e-30 135.2 68 92.6
Lj4g0020381 Lotus japonicus HOM05D005783 ORTHO05D007042 2.9e-30 135.2 68 94.1
Glyma.03G164500 Glycine max HOM05D005783 ORTHO05D007042 8.5e-30 133.7 65 96.9
arahy.Tifrunner.gnm1.ann1.3WZ992 Arachis hypogaea HOM05D005783 ORTHO05D007042 1.1e-29 133.3 65 95.4
arahy.Tifrunner.gnm1.ann1.EB1FDX Arachis hypogaea HOM05D005783 ORTHO05D007042 1.1e-29 133.3 65 95.4
arahy.Tifrunner.gnm1.ann1.P2X2DJ Arachis hypogaea HOM05D005783 ORTHO05D007042 1.1e-29 133.3 65 95.4
arahy.Tifrunner.gnm1.ann1.R5MBR2 Arachis hypogaea HOM05D005783 ORTHO05D007042 1.1e-29 133.3 65 95.4
Eucgr.A00909 Eucalyptus grandis HOM05D005783 ORTHO05D007042 1.1e-29 133.3 67 94.0
CsaV3_3G022140 Cucumis sativus L. HOM05D005783 ORTHO05D007042 1.5e-29 132.9 65 95.4
TWI12G1387 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 1.5e-29 132.9 65 95.4
Migut.N02211 Erythranthe guttata HOM05D005783 ORTHO05D007042 1.9e-29 132.5 65 96.9
Phvul.001G162100 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 3.2e-29 131.7 65 96.9
TWI18G0071 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 3.2e-29 131.7 65 93.8
Lalb_Chr13g0299521 Lupinus albus HOM05D005783 ORTHO05D007042 4.2e-29 131.3 65 95.4
Thecc.06G145600 Theobroma cacao HOM05D005783 ORTHO05D007042 4.2e-29 131.3 65 93.8
CAN.G1366.15 Capsicum annuum HOM05D005783 ORTHO05D007042 5.5e-29 131.0 65 95.4
CAN.G812.22 Capsicum annuum HOM05D005783 ORTHO05D007042 5.5e-29 131.0 65 95.4
Manes.13G035400 Manihot esculenta HOM05D005783 ORTHO05D007042 5.5e-29 131.0 65 95.4
TWI75G0260 Tripterygium wilfordii HOM05D005783 ORTHO05D007042 5.5e-29 131.0 65 93.8
TAR633G0770 Trochodendron aralioides HOM05D005783 ORTHO05D007042 5.5e-29 131.0 65 93.8
Gorai.010G167900 Gossypium raimondii HOM05D005783 ORTHO05D007042 7.2e-29 130.6 68 91.2
Rhsim01G0263700 Rhododendron simsii HOM05D005783 ORTHO05D007042 9.4e-29 130.2 65 93.8
Hund09610 Selenicereus undatus HOM05D005783 ORTHO05D007042 9.4e-29 130.2 65 93.8
CSS0031432 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.2e-28 129.8 65 92.3
Lalb_Chr07g0181091 Lupinus albus HOM05D005783 ORTHO05D007042 1.2e-28 129.8 65 93.8
Lalb_Chr12g0200071 Lupinus albus HOM05D005783 ORTHO05D007042 1.2e-28 129.8 65 93.8
Manes.13G035600 Manihot esculenta HOM05D005783 ORTHO05D007042 1.2e-28 129.8 65 93.8
Sed0003492 Sechium edule HOM05D005783 ORTHO05D007042 1.6e-28 129.4 65 93.8
Lsat_1_v5_gn_9_10421 Lactuca sativa HOM05D005783 ORTHO05D007042 2.1e-28 129.0 65 93.8
Gohir.D06G144100 Gossypium hirsutum HOM05D005783 ORTHO05D007042 2.7e-28 128.6 65 92.3
Lsat_1_v5_gn_5_182900 Lactuca sativa HOM05D005783 ORTHO05D007042 2.7e-28 128.6 65 95.4
Phvul.007G033301 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 2.7e-28 128.6 65 95.4
Phvul.008G022975 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 2.7e-28 128.6 65 95.4
Aqoxy3G02728 Aquilegia oxysepala HOM05D005783 ORTHO05D007042 3.6e-28 128.3 65 92.3
Duzib235G0343 Durio zibethinus HOM05D005783 ORTHO05D007042 3.6e-28 128.3 65 90.8
Nitab4.5_0000326g0120 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.6e-28 128.3 65 92.3
Nitab4.5_0005593g0040 Nicotiana tabacum HOM05D005783 ORTHO05D007042 3.6e-28 128.3 65 92.3
Hund02922 Selenicereus undatus HOM05D005783 ORTHO05D007042 3.6e-28 128.3 65 92.3
HPP92_023430 Vanilla planifolia HOM05D005783 ORTHO05D007042 3.6e-28 128.3 65 90.8
Ciclev10023246m.g Citrus clementina HOM05D005783 ORTHO05D007042 4.7e-28 127.9 65 90.8
Sed0004262 Sechium edule HOM05D005783 ORTHO05D007042 4.7e-28 127.9 65 92.3
Actinidia09533 Actinidia chinensis HOM05D000063 ORTHO05D002147 6.1e-28 127.5 65 92.3
HanXRQChr09g0254261 Helianthus annuus HOM05D005783 ORTHO05D007042 6.1e-28 127.5 65 93.8
Nn3g19695 Nelumbo nucifera HOM05D005783 ORTHO05D007042 6.1e-28 127.5 65 92.3
PGSC0003DMG400025503 Solanum tuberosum HOM05D005783 ORTHO05D007042 6.1e-28 127.5 65 92.3
GSVIVG01033693001 Vitis vinifera HOM05D005783 ORTHO05D007042 6.1e-28 127.5 65 90.8
EL10As5g23481 Beta vulgaris HOM05D005783 ORTHO05D007042 8.0e-28 127.1 65 92.3
FAN20G2131 Fragaria x ananassa HOM05D005783 ORTHO05D007042 8.0e-28 127.1 70 87.1
Nitab4.5_0007062g0060 Nicotiana tabacum HOM05D005783 ORTHO05D007042 8.0e-28 127.1 65 90.8
CSS0015227 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 1.0e-27 126.7 65 90.8
CiPaw.04G187800 Carya illinoinensis HOM05D005783 ORTHO05D007042 1.0e-27 126.7 65 92.3
ClCG07G001140 Citrullus lanatus HOM05D005783 ORTHO05D007042 1.4e-27 126.3 75 82.7
Duzib160G0066 Durio zibethinus HOM05D005783 ORTHO05D007042 1.4e-27 126.3 65 90.8
ECA247G3893 Erigeron canadensis HOM05D005783 ORTHO05D007042 1.4e-27 126.3 61 96.7
Medtr7g097110 Medicago truncatula HOM05D005783 ORTHO05D007042 1.4e-27 126.3 65 92.3
Solyc09g066500.4 Solanum lycopersicum HOM05D005783 ORTHO05D007042 1.4e-27 126.3 65 92.3
PGSC0003DMG400010293 Solanum tuberosum HOM05D005783 ORTHO05D007042 1.4e-27 126.3 65 92.3
Atru.chr5.1729 Acer truncatum HOM05D005783 ORTHO05D007042 1.8e-27 125.9 63 93.7
Potri.002G036500 Populus trichocarpa HOM05D005783 ORTHO05D007042 2.3e-27 125.6 65 92.3
Peaxi162Scf00624g00036 Petunia axillaris HOM05D005783 ORTHO05D007042 3.0e-27 125.2 65 90.8
Cc08_g00200 Coffea canephora HOM05D005783 ORTHO05D007042 5.2e-27 124.4 65 89.2
PGR031G0633 Punica granatum HOM05D005783 ORTHO05D007042 5.2e-27 124.4 65 92.3
THA.LOC104814520 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 5.2e-27 124.4 65 89.2
Atru.chr12.1356 Acer truncatum HOM05D005783 ORTHO05D007042 6.7e-27 124.0 63 90.5
FvH4_2g21220 Fragaria vesca HOM05D005783 ORTHO05D007042 6.7e-27 124.0 65 90.8
Nitab4.5_0006107g0020 Nicotiana tabacum HOM05D005783 ORTHO05D007042 6.7e-27 124.0 63 90.5
RcHm_v2.0_Chr6g0287721 Rosa chinensis HOM05D005783 ORTHO05D007042 6.7e-27 124.0 65 90.8
THA.LOC104804047 Tarenaya hassleriana HOM05D005783 ORTHO05D007042 8.8e-27 123.6 65 89.2
CANSAT01G1988 Cannabis sativa HOM05D005783 ORTHO05D007042 1.1e-26 123.2 65 90.8
CDE03G0454 Ceratophyllum demersum HOM05D005783 ORTHO05D007042 1.1e-26 123.2 65 90.8
PSO210G0272 Papaver somniferum HOM05D005783 ORTHO05D007042 1.1e-26 123.2 65 87.7
PSO210G6011 Papaver somniferum HOM05D005783 ORTHO05D007042 1.1e-26 123.2 65 87.7
PSO386G0180 Papaver somniferum HOM05D005783 ORTHO05D007042 1.1e-26 123.2 65 87.7
PSO386G0258 Papaver somniferum HOM05D005783 ORTHO05D007042 1.1e-26 123.2 65 87.7
Gohir.A10G043300 Gossypium hirsutum HOM05D005783 ORTHO05D007042 2.0e-26 122.5 65 90.8
Gohir.D10G044500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 2.0e-26 122.5 65 90.8
Gorai.011G047500 Gossypium raimondii HOM05D005783 ORTHO05D007042 2.0e-26 122.5 65 90.8
Potri.005G226300 Populus trichocarpa HOM05D005783 ORTHO05D007042 2.0e-26 122.5 65 89.2
COL.COLO4_31022 Corchorus olitorius HOM05D005783 ORTHO05D007042 3.3e-26 121.7 65 87.7
MBI07_g16905_MAGBIO Magnolia biondii HOM05D005783 ORTHO05D007042 9.7e-26 120.2 61 90.2
Os02g0618250 Oryza sativa ssp. japonica HOM05D005783 ORTHO05D007042 1.3e-25 119.8 65 84.6
Gohir.A06G139500 Gossypium hirsutum HOM05D005783 ORTHO05D007042 1.7e-25 119.4 65 87.7
SalBow6G4406 Salvia bowleyana HOM05D005783 ORTHO05D007042 1.7e-25 119.4 87 70.1
Medtr8g069770 Medicago truncatula HOM05D005783 ORTHO05D007042 2.8e-25 118.6 65 87.7
Cfa013045 Carpinus fangiana HOM05D005783 ORTHO05D007042 6.3e-25 117.5 65 84.6
MD05G1194800 Malus domestica HOM05D005783 ORTHO05D007042 6.3e-25 117.5 65 86.2
MD10G1181400 Malus domestica HOM05D005783 ORTHO05D007042 8.2e-25 117.1 65 84.6
Aa31LG8G17440 Aethionema arabicum HOM05D006747 ORTHO05D008384 1.1e-24 116.7 63 85.7
AL3G53490 Arabidopsis lyrata HOM05D005783 ORTHO05D007042 1.1e-24 116.7 65 84.6
Prupe.8G221500 Prunus persica HOM05D005783 ORTHO05D007042 1.4e-24 116.3 65 84.6
unitig_60.g25746 Utricularia gibba HOM05D005783 ORTHO05D007042 1.4e-24 116.3 83 72.3
Carub.0003s3493 Capsella rubella HOM05D005783 ORTHO05D007042 3.1e-24 115.2 65 83.1
CARHR111040 Cardamine hirsuta HOM05D005783 ORTHO05D007042 3.1e-24 115.2 65 83.1
Sp3g33690 Schrenkiella parvula HOM05D005783 ORTHO05D007042 5.3e-24 114.4 65 83.1
AT2G20490 Arabidopsis thaliana HOM05D005783 ORTHO05D007042 1.2e-23 113.2 65 81.5
A07p00260 Brassica napus HOM05D005783 ORTHO05D007042 1.6e-23 112.8 65 81.5
BraA07t27818Z Brassica rapa HOM05D005783 ORTHO05D007042 1.6e-23 112.8 65 81.5
Thhalv10002146m.g Eutrema salsugineum HOM05D005783 ORTHO05D007042 2.7e-23 112.1 65 80.0
BcaC07g41214 Brassica carinata HOM05D005783 ORTHO05D007042 4.5e-23 111.3 65 80.0
A09p58870 Brassica napus HOM05D005783 ORTHO05D007042 4.5e-23 111.3 65 80.0
C08p42200 Brassica napus HOM05D005783 ORTHO05D007042 4.5e-23 111.3 65 80.0
BolC8t51779H Brassica oleracea HOM05D005783 ORTHO05D007042 4.5e-23 111.3 65 80.0
BraA09t41273Z Brassica rapa HOM05D005783 ORTHO05D007042 4.5e-23 111.3 65 80.0
FAN15G2862 Fragaria x ananassa HOM05D005783 ORTHO05D007042 4.5e-23 111.3 87 67.8
BcaC06g36737 Brassica carinata HOM05D005783 ORTHO05D007042 7.7e-23 110.5 65 80.0
C07p00540 Brassica napus HOM05D005783 ORTHO05D007042 7.7e-23 110.5 65 80.0
SEGI_26494 Sequoiadendron giganteum HOM05D005783 ORTHO05D007042 1.7e-22 109.4 97 58.8
BcaB03g16843 Brassica carinata HOM05D005783 ORTHO05D007042 2.2e-22 109.0 65 78.5
BcaB08g34911 Brassica carinata HOM05D005783 ORTHO05D007042 2.9e-22 108.6 65 78.5
BcaC04g22786 Brassica carinata HOM05D005783 ORTHO05D007042 2.9e-22 108.6 65 78.5
A09p12910 Brassica napus HOM05D005783 ORTHO05D007042 2.9e-22 108.6 65 78.5
C09p15300 Brassica napus HOM05D005783 ORTHO05D007042 2.9e-22 108.6 65 78.5
BraA09t36936Z Brassica rapa HOM05D005783 ORTHO05D007042 2.9e-22 108.6 65 78.5
Haze_21406 Corylus avellana HOM05D005783 ORTHO05D007042 1.1e-21 106.7 78 69.2
FAN27G1156 Fragaria x ananassa HOM05D005783 ORTHO05D007042 1.1e-21 106.7 99 59.6
Pp3c19_4700 Physcomitrium patens HOM05D005783 ORTHO05D007042 1.5e-21 106.3 65 75.4
SalBow6G1359 Salvia bowleyana HOM05D005783 ORTHO05D007042 7.2e-21 104.0 116 52.6
SMO133G0019 Selaginella moellendorffii HOM05D005783 ORTHO05D007042 1.2e-20 103.2 65 70.8
Mapoly0081s0079 Marchantia polymorpha HOM05D005783 ORTHO05D007042 6.1e-20 100.9 65 70.8
BolC7t40500H Brassica oleracea HOM05D005783 ORTHO05D007042 1.0e-19 100.1 78 65.4
MCO03G241 Micromonas commoda HOM05D005783 ORTHO05D007042 1.5e-18 96.3 63 68.3
Cre05.g237700 Chlamydomonas reinhardtii HOM05D005783 ORTHO05D007042 5.7e-18 94.4 63 66.7
BolC9t54438H Brassica oleracea HOM05D005783 ORTHO05D007042 9.8e-18 93.6 93 54.8
PRCOL_00002782 Prasinoderma coloniale HOM05D005783 ORTHO05D007042 1.7e-17 92.8 65 66.2
HanXRQChr10g0280801 Helianthus annuus HOM05D005783 ORTHO05D007042 2.2e-17 92.4 47 93.6
MELO3C033129.2 Cucumis melo HOM05D005783 ORTHO05D007042 6.3e-17 90.9 59 78.0
Phvul.011G076600 Phaseolus vulgaris HOM05D005783 ORTHO05D007042 8.3e-17 90.5 47 93.6
Sabra05G0174700 Salix brachista HOM05D005783 ORTHO05D007042 4.5e-15 84.7 48 83.3
CAN.G304.1 Capsicum annuum HOM05D005783 ORTHO05D007042 2.1e-12 75.9 78 51.3
Duzib192G0414 Durio zibethinus HOM05D005783 ORTHO05D007042 2.1e-12 75.9 89 51.7
unitig_0.g159 Utricularia gibba HOM05D005783 ORTHO05D007042 6.1e-12 74.3 52 63.5
CSS0019928 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.0e-10 69.3 68 52.9
BcaC03g16291 Brassica carinata HOM05D005783 ORTHO05D007042 5.7e-10 67.8 47 70.2
CSS0014186 Camellia sinensis var. sinensis HOM05D005783 ORTHO05D007042 2.8e-09 65.5 63 57.1
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 6.3e-09 64.3 30 96.7
FAN24G2571 Fragaria x ananassa HOM05D005783 ORTHO05D007042 9.2e-08 60.5 33 87.9


User provided reference genes

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