Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 3.9e-105 384.8 191 100.0
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 4.0e-102 374.8 191 97.9
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 3.1e-86 322.0 191 84.3
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 2.7e-34 149.4 190 45.3
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 3.0e-33 146.0 191 44.5
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.2e-31 139.8 206 42.7
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.4e-30 137.1 210 40.5
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 4.1e-30 135.6 192 42.7
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.0e-29 133.3 202 39.1
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.0e-28 131.0 122 49.2
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 5.0e-28 128.6 123 50.4
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 1.9e-27 126.7 177 42.4
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.5e-27 126.3 107 50.5
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.6e-26 123.6 194 40.2
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.6e-26 123.6 125 48.8
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.0e-25 119.4 125 44.8
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.5e-24 117.1 132 48.5
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 2.0e-24 116.7 181 38.1
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.6e-24 116.3 118 49.2
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 3.3e-24 115.9 123 44.7
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 3.3e-24 115.9 123 44.7
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 3.3e-24 115.9 123 44.7
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 4.4e-24 115.5 121 47.1
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 7.4e-24 114.8 118 48.3
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 7.4e-24 114.8 118 48.3
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 7.4e-24 114.8 114 47.4
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 7.4e-24 114.8 147 42.9
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 7.4e-24 114.8 145 43.4
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.3e-23 114.0 114 48.2
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.3e-23 114.0 114 50.0
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.3e-23 114.0 118 44.9
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.7e-23 113.6 121 46.3
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 2.8e-23 112.8 114 46.5
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 2.8e-23 112.8 125 44.8
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 3.7e-23 112.5 122 42.6
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 3.7e-23 112.5 114 49.1
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 4.8e-23 112.1 123 43.9
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 4.8e-23 112.1 127 43.3
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.8e-23 112.1 126 41.3
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 4.8e-23 112.1 134 43.3
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 4.8e-23 112.1 134 43.3
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 6.3e-23 111.7 127 42.5
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 6.3e-23 111.7 122 44.3
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 8.2e-23 111.3 121 44.6
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 8.2e-23 111.3 114 46.5
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.1e-22 110.9 137 42.3
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 1.4e-22 110.5 153 40.5
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.4e-22 110.5 129 42.6
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.4e-22 110.5 126 42.9
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.4e-22 110.5 126 42.9
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.4e-22 110.5 126 42.9
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.4e-22 110.5 126 42.9
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.4e-22 110.5 114 44.7
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.4e-22 110.5 114 44.7
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 1.8e-22 110.2 121 44.6
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.8e-22 110.2 183 37.7
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.4e-22 109.8 121 45.5
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.4e-22 109.8 125 44.0
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 2.4e-22 109.8 158 41.1
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 3.1e-22 109.4 157 38.2
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 3.1e-22 109.4 144 40.3
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 4.1e-22 109.0 150 38.0
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.1e-22 109.0 145 41.4
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.1e-22 109.0 161 41.0
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 4.1e-22 109.0 181 36.5
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 5.3e-22 108.6 112 44.6
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 7.0e-22 108.2 168 39.3
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 9.1e-22 107.8 150 38.7
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 9.1e-22 107.8 150 38.7
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 9.1e-22 107.8 181 36.5
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.2e-21 107.5 121 43.0
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.2e-21 107.5 121 43.0
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.2e-21 107.5 122 41.8
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.2e-21 107.5 118 44.9
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.2e-21 107.5 111 44.1
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 1.2e-21 107.5 125 43.2
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.6e-21 107.1 145 40.7
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 1.6e-21 107.1 141 41.8
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 1.6e-21 107.1 119 44.5
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.6e-21 107.1 114 45.6
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 2.0e-21 106.7 115 39.1
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 2.0e-21 106.7 121 43.0
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 2.0e-21 106.7 137 41.6
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 2.6e-21 106.3 121 44.6
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 3.5e-21 105.9 128 44.5
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 3.5e-21 105.9 114 45.6
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 4.5e-21 105.5 119 44.5
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 4.5e-21 105.5 116 46.6
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 5.9e-21 105.1 150 37.3
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 5.9e-21 105.1 145 40.0
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.9e-21 105.1 145 40.0
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.9e-21 105.1 154 37.0
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 5.9e-21 105.1 114 43.0
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 5.9e-21 105.1 138 39.1
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.7e-21 104.8 216 34.7
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 7.7e-21 104.8 111 43.2
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 7.7e-21 104.8 123 42.3
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.0e-20 104.4 90 53.3
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.0e-20 104.4 157 40.1
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.0e-20 104.4 114 43.9
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.0e-20 104.4 110 43.6
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.0e-20 104.4 152 36.2
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 1.0e-20 104.4 125 42.4
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.0e-20 104.4 114 44.7
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.3e-20 104.0 114 43.9
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 1.3e-20 104.0 127 43.3
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.7e-20 103.6 118 43.2
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.7e-20 103.6 118 43.2
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.2e-20 103.2 145 38.6
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 2.2e-20 103.2 119 42.9
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.2e-20 103.2 145 40.0
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 2.2e-20 103.2 141 39.7
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 2.9e-20 102.8 121 41.3
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.9e-20 102.8 114 43.9
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 3.8e-20 102.4 114 40.4
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.8e-20 102.4 154 36.4
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.8e-20 102.4 174 38.5
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 5.0e-20 102.1 151 38.4
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.0e-20 102.1 145 39.3
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 5.0e-20 102.1 114 40.4
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 6.5e-20 101.7 156 38.5
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 6.5e-20 101.7 143 35.7
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 6.5e-20 101.7 114 43.0
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 8.5e-20 101.3 111 45.0
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.1e-19 100.9 153 35.9
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.5e-19 100.5 114 43.9
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.9e-19 100.1 114 41.2
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 2.5e-19 99.8 140 39.3
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 4.2e-19 99.0 128 40.6
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 4.2e-19 99.0 122 41.0
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 5.5e-19 98.6 155 34.2
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 5.5e-19 98.6 140 41.4
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 7.2e-19 98.2 146 36.3
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 9.4e-19 97.8 155 38.1
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.6e-18 97.1 152 35.5
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 2.7e-18 96.3 147 39.5
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.7e-18 96.3 111 41.4
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 3.6e-18 95.9 171 33.3
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 4.7e-18 95.5 147 36.1
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 4.7e-18 95.5 108 41.7
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 4.7e-18 95.5 114 41.2
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 6.1e-18 95.1 141 39.0
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.1e-18 95.1 111 41.4
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 1.0e-17 94.4 126 38.1
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 1.4e-17 94.0 153 37.9
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.4e-17 94.0 114 38.6
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.4e-17 94.0 114 41.2
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.0e-17 92.8 111 38.7
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 5.2e-17 92.0 114 37.7
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 1.2e-16 90.9 122 39.3
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 2.6e-16 89.7 144 32.6
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 2.6e-16 89.7 111 39.6
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 4.4e-16 89.0 94 43.6
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.4e-16 89.0 107 38.3
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 9.7e-16 87.8 144 37.5
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.3e-15 85.1 82 47.6
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.4e-14 83.2 94 39.4
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 7.0e-14 81.6 103 41.7
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.2e-11 72.8 89 41.6
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 5.5e-11 72.0 95 40.0
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 1.2e-10 70.9 144 35.4
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.0e-10 68.2 66 47.0
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 5.2e-09 65.5 72 41.7
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 6.8e-09 65.1 151 33.8
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.6e-08 63.2 67 44.8


User provided reference genes

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