Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 0.0e+00 1174.5 605 100.0
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 0.0e+00 1156.4 605 98.3
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 3.4e-280 968.0 605 82.8
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 4.1e-278 961.1 606 82.8
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 9.2e-278 959.9 605 83.0
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 1.5e-272 942.6 605 80.2
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 4.9e-271 937.6 606 79.0
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 2.7e-269 931.8 607 79.7
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 9.5e-267 923.3 599 81.0
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 3.6e-266 921.4 604 79.5
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 1.7e-260 902.5 607 76.1
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 1.3e-255 886.3 605 74.4
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.4e-254 882.1 606 74.8
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 9.6e-235 817.0 604 69.4
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 4.0e-233 811.6 604 68.5
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 4.9e-231 804.7 602 68.1
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 7.9e-229 797.3 604 67.9
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 7.9e-229 797.3 606 67.0
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 5.1e-228 794.7 605 67.4
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 3.3e-227 792.0 609 66.8
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 9.6e-227 790.4 604 67.5
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 1.1e-225 786.9 605 66.0
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 6.9e-225 784.3 606 65.8
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 1.5e-224 783.1 603 67.3
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 5.9e-224 781.2 604 65.2
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.3e-223 780.0 603 66.0
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 1.7e-223 779.6 601 65.7
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.4e-222 776.5 607 66.6
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 3.2e-222 775.4 606 66.0
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 4.2e-222 775.0 602 66.6
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 7.2e-222 774.2 604 64.6
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.6e-221 773.1 604 69.4
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 3.6e-221 771.9 603 64.3
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 7.9e-221 770.8 602 65.3
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 2.3e-220 769.2 600 65.3
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.1e-219 766.9 607 63.9
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 1.9e-219 766.1 603 63.7
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 2.5e-219 765.8 610 63.3
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 3.3e-219 765.4 605 65.3
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 5.7e-219 764.6 605 66.3
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 5.7e-219 764.6 641 62.6
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 1.6e-218 763.1 603 64.3
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 2.8e-218 762.3 606 65.3
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.4e-217 760.0 607 65.1
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 1.8e-217 759.6 607 65.6
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 6.9e-217 757.7 608 64.3
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 2.0e-216 756.1 620 63.5
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 2.6e-216 755.7 586 67.1
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 1.3e-215 753.4 608 64.8
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.7e-215 753.1 602 63.8
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 8.5e-215 750.7 604 63.7
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 1.1e-214 750.4 604 63.7
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 2.5e-214 749.2 606 64.5
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 3.2e-214 748.8 605 63.6
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.6e-213 746.5 607 64.1
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 1.6e-213 746.5 623 62.6
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 2.1e-213 746.1 605 63.6
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 2.7e-213 745.7 605 63.6
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 8.8e-212 740.7 600 63.3
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 1.1e-211 740.3 612 63.4
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 3.3e-211 738.8 601 64.7
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 7.4e-211 737.6 607 63.3
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 9.7e-211 737.3 597 64.5
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 2.8e-210 735.7 603 62.7
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 6.3e-210 734.6 603 62.7
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 8.2e-210 734.2 608 62.7
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.4e-209 733.4 608 64.3
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.8e-209 733.0 606 63.4
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 4.1e-209 731.9 601 64.1
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 9.1e-209 730.7 608 62.3
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 1.0e-207 727.2 600 62.7
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.0e-207 727.2 603 60.4
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 1.7e-207 726.5 601 63.4
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.7e-207 726.5 608 63.5
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.2e-207 726.1 601 63.1
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 2.9e-207 725.7 637 61.1
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 6.5e-207 724.5 601 63.1
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 1.4e-206 723.4 608 60.4
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 2.5e-206 722.6 608 62.5
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 3.2e-206 722.2 601 63.1
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.6e-205 719.9 608 62.2
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 1.8e-204 716.5 574 63.6
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.1e-203 713.8 608 60.2
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 2.0e-203 713.0 614 61.2
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 4.4e-203 711.8 584 63.2
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 7.4e-203 711.1 608 59.5
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.7e-202 708.8 605 59.8
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 1.8e-201 706.4 618 58.4
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 7.0e-201 704.5 602 59.0
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 1.9e-198 696.4 541 65.8
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 4.2e-198 695.3 527 65.1
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 9.4e-198 694.1 469 76.3
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 1.2e-197 693.7 601 61.6
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 2.1e-197 693.0 585 61.7
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 2.1e-197 693.0 600 59.5
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 4.7e-197 691.8 601 61.4
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 1.8e-196 689.9 605 58.3
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 1.8e-196 689.9 599 59.8
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 1.8e-196 689.9 613 58.4
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.2e-195 687.2 605 59.3
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 1.5e-195 686.8 613 58.7
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 3.3e-195 685.6 603 61.5
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 7.7e-192 674.5 602 58.0
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.5e-190 670.2 603 59.9
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 3.6e-189 665.6 599 57.9
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 8.0e-189 664.5 603 59.4
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 8.0e-189 664.5 603 59.4
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.3e-188 662.9 603 59.4
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 9.8e-187 657.5 597 58.3
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.7e-186 656.8 603 59.2
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 1.1e-185 654.1 619 55.9
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 2.4e-185 652.9 608 57.9
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 2.1e-181 639.8 605 55.9
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 5.2e-180 635.2 605 56.5
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 2.0e-179 633.3 598 55.5
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 4.4e-179 632.1 602 55.1
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 8.3e-178 627.9 527 62.2
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 2.0e-176 623.2 601 56.9
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 2.5e-174 616.3 586 56.0
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 4.3e-158 562.4 590 51.0
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 1.1e-156 557.8 605 49.6
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 6.4e-154 548.5 518 60.6
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 3.2e-153 546.2 622 49.2
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 3.5e-152 542.7 358 79.6
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.8e-148 530.4 603 50.4
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 3.8e-138 496.1 600 46.7
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 4.9e-130 469.2 445 55.7
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.8e-127 460.7 732 40.0
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 6.0e-120 435.6 397 59.4
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 6.9e-116 422.2 640 40.2
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 1.3e-111 407.9 458 45.2
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.1e-111 406.0 321 65.1
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 6.9e-108 395.6 324 63.3
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 5.9e-99 365.9 621 39.1
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.5e-91 341.3 358 53.1
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 6.5e-82 309.3 268 58.6
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 1.8e-79 301.2 649 34.1
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 3.7e-77 293.5 248 63.7
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 7.7e-67 259.2 652 32.7
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 1.6e-64 251.5 225 57.8
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 1.3e-61 241.9 183 67.2
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.2e-56 225.3 162 67.3
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.2e-51 208.8 135 71.1
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 5.6e-49 199.9 183 62.8
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 1.2e-38 165.6 357 36.4
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 5.1e-34 150.2 118 64.4
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 5.1e-34 150.2 181 54.7
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 1.1e-33 149.1 130 60.0
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.2e-29 134.8 101 64.4
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.9e-29 134.4 101 64.4
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.9e-28 131.7 113 60.2
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 2.4e-28 131.3 113 59.3
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 7.1e-28 129.8 81 76.5
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 2.7e-27 127.9 138 54.3
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 4.3e-25 120.6 76 71.1
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 2.1e-24 118.2 213 40.8
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 2.6e-22 111.3 56 92.9
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 1.9e-20 105.1 82 63.4
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 1.0e-18 99.4 137 46.7
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 8.7e-18 96.3 106 50.9
Medtr6g022570 Medicago truncatula HOM05D004159 ORTHO05D005858 1.1e-15 89.4 152 42.1
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 9.9e-14 82.8 72 62.5
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 2.2e-13 81.6 98 53.1
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 2.1e-08 65.1 34 88.2
Sc03g0007490 Simmondsia chinensis HOM05D004159 ORTHO05D388831 1.8e-07 62.0 97 40.2
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 2.6e-06 58.2 41 63.4


User provided reference genes

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