Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 1.5e-192 676.0 341 100.0
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 1.3e-124 450.3 345 69.9
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 2.3e-124 449.5 345 69.6
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 1.1e-123 447.2 345 69.9
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 7.6e-120 434.5 345 69.3
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 1.3e-119 433.7 343 70.6
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 1.3e-119 433.7 345 69.3
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 1.9e-118 429.9 345 65.5
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 5.4e-118 428.3 345 65.2
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 5.4e-118 428.3 343 70.0
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 5.8e-112 408.3 341 65.4
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 1.2e-101 374.0 345 58.3
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 1.0e-100 370.9 259 73.7
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 8.7e-100 367.9 343 56.6
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 1.5e-99 367.1 349 55.9
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 5.6e-99 365.2 348 56.3
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 2.8e-98 362.8 344 59.0
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 4.8e-98 362.1 347 56.8
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 1.3e-95 354.0 343 55.1
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 2.2e-95 353.2 343 58.6
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 9.3e-94 347.8 334 56.9
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 1.2e-93 347.4 344 53.8
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 8.7e-92 341.3 345 55.1
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 1.1e-91 340.9 343 56.6
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 1.6e-90 337.0 347 55.6
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 2.1e-90 336.7 348 53.2
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 2.8e-90 336.3 346 52.0
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 1.5e-88 330.5 346 50.9
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 2.0e-88 330.1 362 52.2
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 1.0e-87 327.8 349 53.3
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 4.2e-86 322.4 347 52.4
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 4.2e-86 322.4 342 51.8
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 9.3e-86 321.2 371 49.9
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 3.6e-85 319.3 348 50.9
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 4.6e-85 318.9 344 50.3
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 4.6e-85 318.9 343 52.8
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 1.1e-83 314.3 346 51.7
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 3.3e-83 312.8 338 50.6
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 3.3e-83 312.8 343 49.6
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 5.7e-83 312.0 347 50.4
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 2.8e-82 309.7 347 51.0
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 2.8e-82 309.7 338 53.8
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 6.3e-82 308.5 355 50.7
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 2.4e-81 306.6 357 50.4
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 5.3e-81 305.4 347 51.3
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 6.9e-81 305.1 392 46.2
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 1.2e-80 304.3 347 49.3
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 1.5e-80 303.9 333 47.1
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 2.6e-80 303.1 338 49.7
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 2.6e-80 303.1 343 49.9
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 4.5e-80 302.4 347 49.3
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 5.9e-80 302.0 339 49.6
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 1.0e-79 301.2 343 49.6
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 2.9e-79 299.7 340 49.7
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 8.5e-79 298.1 353 46.2
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 2.5e-78 296.6 343 48.4
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 7.2e-78 295.0 343 49.6
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 1.6e-77 293.9 336 48.5
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 4.6e-77 292.4 344 50.0
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 1.4e-76 290.8 337 47.5
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 1.4e-76 290.8 364 48.1
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 3.0e-76 289.7 350 46.6
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 5.1e-76 288.9 337 50.1
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 3.7e-74 282.7 327 48.6
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 5.3e-73 278.9 351 47.0
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 1.5e-72 277.3 291 53.6
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 1.5e-72 277.3 357 44.5
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 6.5e-71 271.9 345 47.0
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 5.5e-70 268.9 345 43.8
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 1.2e-69 267.7 348 43.7
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 4.7e-69 265.8 362 44.5
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 2.3e-68 263.5 356 46.1
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 3.9e-68 262.7 354 45.5
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 1.3e-66 257.7 259 51.0
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 1.3e-66 257.7 332 46.4
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 8.2e-66 255.0 215 58.6
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 9.1e-65 251.5 340 45.6
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 1.6e-64 250.8 326 44.2
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 3.5e-64 249.6 324 42.6
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 4.5e-64 249.2 329 46.5
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 1.0e-63 248.1 328 44.5
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 2.2e-63 246.9 281 50.2
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 6.5e-63 245.4 339 45.4
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 2.5e-62 243.4 300 46.3
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 2.5e-62 243.4 300 46.3
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 3.2e-62 243.0 331 45.3
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 4.2e-62 242.7 297 45.8
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.4e-60 237.7 304 47.0
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 4.0e-60 236.1 361 42.1
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.2e-59 234.6 304 46.4
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 1.5e-59 234.2 341 43.1
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 3.3e-59 233.0 232 51.3
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 1.3e-58 231.1 330 40.9
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 2.2e-58 230.3 362 40.9
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 4.8e-58 229.2 322 42.2
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 1.8e-57 227.3 276 42.4
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 1.2e-56 224.6 360 41.4
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 1.7e-55 220.7 242 50.4
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 3.2e-54 216.5 289 42.9
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 2.1e-53 213.8 241 48.1
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 8.0e-53 211.8 252 48.4
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 1.0e-52 211.5 276 42.8
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 1.8e-52 210.7 270 46.7
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 6.8e-52 208.8 298 44.6
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 2.6e-51 206.8 349 37.5
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 7.2e-46 188.7 212 46.7
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 8.8e-44 181.8 215 46.0
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 1.2e-43 181.4 195 52.8
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 1.3e-42 177.9 208 47.6
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 3.1e-41 173.3 215 44.7
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 3.5e-40 169.9 213 45.5
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 1.6e-37 161.0 249 39.0
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.7e-37 159.5 250 39.6
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 1.8e-36 157.5 215 40.9
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.0e-36 156.4 249 39.0
SEGI_10576 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 2.0e-35 154.1 161 49.1
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 5.7e-35 152.5 249 37.8
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 3.2e-33 146.7 213 38.5
MD12G1209000 Malus domestica HOM05D006444 ORTHO05D007748 1.5e-30 137.9 149 51.7
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 2.8e-29 133.7 119 53.8
FAN09G3591 Fragaria x ananassa HOM05D006444 ORTHO05D007748 2.8e-29 133.7 153 49.7
MCO01G157 Micromonas commoda HOM05D005236 ORTHO05D006557 6.2e-21 105.9 196 35.7
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 2.1e-16 90.9 80 57.5
Actinidia35535 Actinidia chinensis HOM05D006444 ORTHO05D007748 2.0e-11 74.3 97 49.5
PRCOL_00002449 Prasinoderma coloniale HOM05D005236 ORTHO05D006557 7.1e-09 65.9 205 29.3
SEGI_25648 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 5.1e-07 59.7 70 50.0
Cre01.g021850 Chlamydomonas reinhardtii HOM05D005236 ORTHO05D006557 2.5e-06 57.4 154 29.9


User provided reference genes

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