Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 2393.6 1181 100.0
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1955.6 1186 81.5
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1893.2 1182 80.5
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1880.5 1189 80.1
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1876.7 1190 78.6
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1844.7 1181 77.6
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1750.3 1177 73.7
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1716.8 1187 72.3
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1693.7 1062 80.5
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1656.3 1059 79.7
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1519.6 1184 65.2
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1479.5 1398 56.4
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1461.4 1184 62.7
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1456.8 1185 62.4
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1453.7 1135 65.6
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1452.6 1189 62.8
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1449.9 1191 60.5
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1442.2 1186 63.1
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1437.6 1190 61.3
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1432.9 1182 61.3
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1429.5 1181 61.7
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1409.4 1168 61.3
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1404.8 1191 60.1
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1399.8 1173 59.5
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1398.6 1189 60.9
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1398.6 1179 60.3
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1390.2 1186 59.5
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1385.5 1184 59.7
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1382.1 1185 59.6
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1371.7 1187 59.6
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1371.7 1184 59.0
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1370.9 1187 59.6
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1367.1 1213 57.1
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1364.7 1196 59.2
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1352.8 1187 58.9
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1330.9 1187 58.4
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1326.6 1175 57.3
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 1326.2 1174 56.6
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 1317.4 1174 56.5
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1312.7 1220 55.7
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1312.7 1172 58.3
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1303.5 1192 57.0
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1292.7 1390 50.9
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 1290.4 1172 55.8
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1288.1 1188 56.6
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1286.9 1159 56.6
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 1284.6 1176 56.2
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1284.6 1179 55.6
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1283.5 1172 56.3
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 1282.7 1176 56.3
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1277.7 1180 56.0
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1270.4 1175 54.7
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1269.6 1186 55.6
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1269.6 1182 55.9
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 1269.2 1172 55.8
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1268.8 1187 54.9
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1268.4 1171 55.8
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1256.9 1180 54.2
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 1256.5 1175 55.4
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1251.5 1179 55.3
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1251.5 1183 54.7
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1248.8 1178 54.8
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1247.6 1184 56.0
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1245.7 1186 53.5
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 1243.4 1174 54.4
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 1240.3 1174 54.3
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1239.6 1182 54.6
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 1232.6 1174 54.3
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1232.6 1185 54.8
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1223.4 1216 53.0
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1205.7 1182 52.7
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1203.3 1171 52.7
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1203.0 1040 59.8
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1197.2 1174 52.9
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1183.3 1174 52.5
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1182.5 1136 54.0
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1148.3 1182 50.1
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1121.7 1172 50.7
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 3.0e-309 1065.4 1191 47.7
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.7e-307 1059.7 1213 47.7
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 2.7e-305 1052.4 1186 47.2
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 3.5e-305 1052.0 1123 49.9
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 4.7e-302 1041.6 1112 49.7
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 8.3e-299 1030.8 1115 50.8
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 2.8e-294 1015.8 1166 46.1
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 1.5e-292 1010.0 1178 47.6
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 1.1e-269 934.1 842 59.4
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.8e-269 933.3 766 63.6
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.2e-235 820.1 790 54.7
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 6.3e-230 802.0 1111 42.3
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 1.9e-226 790.4 718 57.7
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 5.2e-208 729.2 766 51.2
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 5.7e-199 699.1 1196 36.8
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 2.3e-171 607.4 581 53.2
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 4.7e-169 599.7 1204 34.3
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 9.9e-151 538.9 442 62.2
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.2e-148 531.9 636 46.9
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 7.1e-141 506.1 1115 32.2
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 3.8e-134 483.8 466 52.4
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 3.2e-125 454.1 781 35.3
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 2.8e-121 441.0 391 55.0
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 2.2e-110 404.8 432 49.3
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 5.1e-107 393.7 524 41.0
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 5.9e-95 353.6 420 43.3
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 9.1e-88 329.7 302 53.6
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 5.9e-87 327.0 213 71.4
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 7.0e-72 276.9 238 63.4
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 7.7e-71 273.5 185 69.7
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 1.6e-60 239.2 179 71.5
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 2.3e-59 235.3 204 58.8
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-58 232.6 1125 26.3
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 6.0e-47 194.1 264 40.9
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 1.9e-32 146.0 121 55.4
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.6e-31 142.9 370 30.3
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 1.1e-27 130.2 157 43.9
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 1.1e-21 110.2 853 21.9
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 1.1e-19 103.6 66 74.2
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 4.0e-19 101.7 462 24.2
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 1.7e-17 96.3 53 84.9
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 3.8e-17 95.1 67 59.7
arahy.Tifrunner.gnm1.ann1.5RG0UU Arachis hypogaea HOM05D006523 ORTHO05D008212 2.7e-15 89.0 69 66.7
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 6.0e-15 87.8 107 46.7
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 6.0e-15 87.8 79 55.7
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 6.7e-14 84.3 48 83.3
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 3.7e-12 78.6 54 74.1
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 6.9e-11 74.3 116 44.0
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 1.9e-08 66.2 46 63.0
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 4.2e-08 65.1 46 63.0
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 7.9e-07 60.8 336 24.4
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.0e-06 58.9 329 24.0


User provided reference genes

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