Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.5e-182 643.7 620 100.0
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.5e-113 414.5 440 68.4
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 1.7e-109 401.0 413 74.6
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 7.1e-108 395.6 361 78.7
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 4.3e-105 386.3 276 83.7
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 5.6e-105 386.0 363 75.2
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 5.8e-102 375.9 212 94.3
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 1.7e-101 374.4 212 93.4
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 2.2e-101 374.0 211 93.8
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.4e-100 370.5 447 72.3
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 2.7e-99 367.1 394 73.9
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 3.9e-98 363.2 362 78.7
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 6.6e-98 362.5 211 91.9
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 1.9e-97 360.9 213 88.3
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 2.5e-97 360.5 427 65.3
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 6.2e-96 355.9 418 66.7
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 3.1e-95 353.6 214 86.0
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.5e-94 351.3 214 86.4
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 1.5e-94 351.3 213 84.5
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 2.0e-94 350.9 213 86.4
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 2.6e-94 350.5 213 85.9
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 3.4e-94 350.1 210 88.1
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 3.4e-94 350.1 407 71.5
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 3.4e-94 350.1 213 85.9
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 4.5e-94 349.7 214 85.5
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 7.6e-94 349.0 213 86.4
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 7.6e-94 349.0 372 74.7
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 9.9e-94 348.6 213 85.9
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 9.9e-94 348.6 223 84.3
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 1.3e-93 348.2 214 84.6
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 2.9e-93 347.1 213 85.4
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 2.9e-93 347.1 213 85.9
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 2.9e-93 347.1 212 83.0
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 3.8e-93 346.7 209 86.6
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 6.4e-93 345.9 214 85.5
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 1.4e-92 344.7 214 85.5
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 1.9e-92 344.4 213 83.6
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 4.2e-92 343.2 213 85.4
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 4.2e-92 343.2 212 83.0
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 4.2e-92 343.2 212 84.9
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 5.5e-92 342.8 214 84.6
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 5.5e-92 342.8 210 85.2
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 7.1e-92 342.4 207 87.9
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.2e-91 341.7 214 85.0
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.2e-91 341.7 214 85.0
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.6e-91 341.3 213 82.6
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 2.1e-91 340.9 213 86.4
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 4.6e-91 339.7 213 82.6
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 7.9e-91 339.0 411 64.0
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 7.9e-91 339.0 211 82.5
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.0e-90 338.6 214 82.2
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.0e-90 338.6 215 83.3
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 1.8e-90 337.8 214 82.2
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 2.3e-90 337.4 217 81.6
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 2.3e-90 337.4 214 82.2
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.0e-90 337.0 210 83.3
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.0e-90 337.0 210 83.3
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 3.0e-90 337.0 208 82.2
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.9e-90 336.7 210 83.3
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.9e-90 336.7 210 83.3
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 3.9e-90 336.7 206 85.4
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 5.1e-90 336.3 361 75.9
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.7e-90 335.9 210 83.3
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 8.7e-90 335.5 358 69.0
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.5e-89 334.7 214 80.8
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 1.9e-89 334.3 213 80.3
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 2.1e-88 330.9 214 79.0
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 4.8e-88 329.7 209 81.8
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 4.8e-88 329.7 212 81.1
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 6.2e-88 329.3 214 79.0
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 6.2e-88 329.3 368 74.5
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 6.2e-88 329.3 354 71.5
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.1e-88 328.9 419 67.8
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 8.1e-88 328.9 419 67.8
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 1.1e-87 328.6 422 63.7
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 1.4e-87 328.2 209 79.9
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 5.3e-87 326.2 344 66.6
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 6.9e-87 325.9 213 79.8
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 9.0e-87 325.5 214 79.0
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 1.5e-86 324.7 213 79.8
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 3.8e-85 320.1 202 82.7
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 4.2e-84 316.6 253 70.8
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 3.5e-83 313.5 196 84.7
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 5.1e-82 309.7 209 78.0
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 6.7e-82 309.3 209 78.0
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 8.7e-82 308.9 195 81.0
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 9.6e-81 305.4 215 74.0
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 2.8e-80 303.9 213 73.7
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 6.9e-79 299.3 213 71.4
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 2.6e-78 297.4 194 80.4
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 4.5e-78 296.6 206 74.8
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 1.3e-77 295.0 183 83.6
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 8.5e-77 292.4 225 74.7
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 2.5e-76 290.8 182 82.4
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 4.2e-76 290.0 183 81.4
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 3.9e-74 283.5 214 67.8
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 6.7e-74 282.7 391 63.2
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 1.3e-69 268.5 203 67.0
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 6.5e-69 266.2 201 68.2
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 2.5e-68 264.2 201 70.1
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.5e-68 264.2 189 72.0
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 5.1e-66 256.5 204 65.2
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 8.2e-64 249.2 157 85.4
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 4.1e-63 246.9 188 70.7
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 5.0e-61 240.0 179 74.3
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.0e-58 232.3 171 72.5
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 7.7e-54 216.1 183 63.9
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.5e-41 175.3 156 59.0
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 3.4e-33 147.5 94 81.9
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 9.8e-33 146.0 115 62.6
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.0e-30 138.3 103 76.7
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 5.2e-26 123.6 199 39.2
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 9.8e-25 119.4 221 35.7
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 2.9e-24 117.9 79 74.7
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 1.4e-23 115.5 82 76.8
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 7.0e-23 113.2 63 92.1
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 1.0e-21 109.4 74 74.3
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 1.1e-20 105.9 74 68.9
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 5.2e-18 97.1 56 85.7
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 7.5e-17 93.2 63 74.6
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 9.8e-17 92.8 67 71.6
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 1.7e-16 92.0 55 80.0
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 2.9e-16 91.3 180 35.6
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 3.7e-16 90.9 106 48.1
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 7.0e-15 86.7 63 69.8
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 2.0e-14 85.1 142 34.5
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 2.0e-14 85.1 142 34.5
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 2.7e-14 84.7 168 34.5
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 1.1e-12 79.3 52 73.1
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 1.6e-11 75.5 159 34.6
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 4.4e-09 67.4 61 62.3
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 4.1e-07 60.8 50 66.0
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 9.2e-07 59.7 36 75.0


User provided reference genes

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