Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0008216 Lotus japonicus HOM05D001403 ORTHO05D001313 3.7e-32 141.0 73 100.0
Lj1g0005278 Lotus japonicus HOM05D001403 ORTHO05D001313 5.0e-29 130.6 66 100.0
TPR.G32799 Trifolium pratense HOM05D001403 ORTHO05D001313 2.8e-19 98.2 66 80.3
Psat3g040800 Pisum sativum HOM05D001403 ORTHO05D001313 5.2e-18 94.0 67 76.1
arahy.Tifrunner.gnm1.ann1.J1L191 Arachis hypogaea HOM05D001403 ORTHO05D001313 6.8e-18 93.6 72 69.4
Phvul.001G181000 Phaseolus vulgaris HOM05D001403 ORTHO05D001313 1.5e-17 92.4 65 73.8
VMungo1383G1778 Vigna mungo HOM05D001403 ORTHO05D001313 1.5e-17 92.4 65 73.8
arahy.Tifrunner.gnm1.ann1.1JKV8J Arachis hypogaea HOM05D001403 ORTHO05D001313 2.0e-17 92.0 72 68.1
Glyma.03G185800 Glycine max HOM05D001403 ORTHO05D001313 2.0e-17 92.0 65 75.4
Medtr7g103020 Medicago truncatula HOM05D001403 ORTHO05D001313 1.3e-16 89.4 67 73.1
Glyma.19G186000 Glycine max HOM05D001403 ORTHO05D001313 1.7e-16 89.0 65 69.2
Lalb_Chr20g0112521 Lupinus albus HOM05D001403 ORTHO05D001313 2.0e-14 82.0 65 61.5
QL11p047522 Quercus lobata HOM05D001403 ORTHO05D001313 1.5e-12 75.9 70 67.1
Haze_02199 Corylus avellana HOM05D001403 ORTHO05D001313 5.6e-12 73.9 68 63.2
CiPaw.05G077100 Carya illinoinensis HOM05D001403 ORTHO05D001313 7.3e-12 73.6 68 61.8
Prupe.8G160500 Prunus persica HOM05D001403 ORTHO05D001313 1.6e-11 72.4 73 57.5
Gohir.D04G165150 Gossypium hirsutum HOM05D001403 ORTHO05D001313 4.7e-11 70.9 55 70.9
Gorai.012G153600 Gossypium raimondii HOM05D001403 ORTHO05D001313 4.7e-11 70.9 55 70.9
Gohir.D01G155700 Gossypium hirsutum HOM05D001403 ORTHO05D001313 8.0e-11 70.1 55 69.1
MD05G1115700 Malus domestica HOM05D001403 ORTHO05D001313 8.0e-11 70.1 77 59.7
FvH4_2g02030 Fragaria vesca HOM05D001403 ORTHO05D001313 1.0e-10 69.7 74 58.1
Gorai.002G192900 Gossypium raimondii HOM05D001403 ORTHO05D001313 1.0e-10 69.7 55 69.1
Gohir.A04G123100 Gossypium hirsutum HOM05D001403 ORTHO05D001313 1.8e-10 68.9 55 69.1
RcHm_v2.0_Chr6g0245261 Rosa chinensis HOM05D001403 ORTHO05D001313 1.8e-10 68.9 77 59.7
Thecc.02G067100 Theobroma cacao HOM05D001403 ORTHO05D001313 1.8e-10 68.9 66 60.6
FAN27G1589 Fragaria x ananassa HOM05D001403 ORTHO05D001313 2.3e-10 68.6 74 58.1
BolC8t51741H Brassica oleracea HOM05D001403 ORTHO05D001313 3.1e-10 68.2 79 51.9
BraA09t41235Z Brassica rapa HOM05D001403 ORTHO05D001313 3.1e-10 68.2 79 51.9
FAN15G2532 Fragaria x ananassa HOM05D001403 ORTHO05D001313 3.1e-10 68.2 74 55.4
FAN20G2773 Fragaria x ananassa HOM05D001403 ORTHO05D001313 3.1e-10 68.2 74 55.4
A09p58480 Brassica napus HOM05D001403 ORTHO05D001313 4.0e-10 67.8 79 51.9
CANSAT25G0104 Cannabis sativa HOM05D001403 ORTHO05D001313 4.0e-10 67.8 74 62.2
Cpa.g.sc37.194 Carica papaya HOM05D001403 ORTHO05D001313 6.8e-10 67.0 79 51.9
Duzib132G0941 Durio zibethinus HOM05D001403 ORTHO05D001313 6.8e-10 67.0 55 67.3
C08p41780 Brassica napus HOM05D001403 ORTHO05D001313 1.2e-09 66.2 79 50.6
MELO3C020780.2 Cucumis melo HOM05D001403 ORTHO05D001313 1.2e-09 66.2 69 59.4
Gohir.A01G163600 Gossypium hirsutum HOM05D001403 ORTHO05D001313 1.2e-09 66.2 55 65.5
Migut.B00166 Erythranthe guttata HOM05D001403 ORTHO05D001313 1.5e-09 65.9 70 58.6
FAN24G1473 Fragaria x ananassa HOM05D001403 ORTHO05D001313 2.0e-09 65.5 74 54.1
MD10G1118200 Malus domestica HOM05D001403 ORTHO05D001313 2.0e-09 65.5 77 58.4
Sed0004870 Sechium edule HOM05D001403 ORTHO05D001313 2.0e-09 65.5 69 55.1
AT2G21170 Arabidopsis thaliana HOM05D001403 ORTHO05D001313 2.6e-09 65.1 72 59.7
COL.COLO4_17255 Corchorus olitorius HOM05D001403 ORTHO05D001313 2.6e-09 65.1 66 57.6
Sp4g00320 Schrenkiella parvula HOM05D001403 ORTHO05D001313 2.6e-09 65.1 83 53.0
TWI79G0193 Tripterygium wilfordii HOM05D001403 ORTHO05D001313 3.4e-09 64.7 80 52.5
Ah.01g009200 Amaranthus hybridus HOM05D001403 ORTHO05D001313 5.8e-09 63.9 63 58.7
CSS0001105 Camellia sinensis var. sinensis HOM05D001403 ORTHO05D001313 5.8e-09 63.9 80 57.5
CSS0046841 Camellia sinensis var. sinensis HOM05D001403 ORTHO05D001313 5.8e-09 63.9 80 57.5
Oeu046126.3 Olea europaea HOM05D001403 ORTHO05D001313 5.8e-09 63.9 70 58.6
Thhalv10000249m.g Eutrema salsugineum HOM05D001403 ORTHO05D001313 7.5e-09 63.5 80 53.8
Carub.0004s0019 Capsella rubella HOM05D001403 ORTHO05D001313 9.8e-09 63.2 72 55.6
PGR142G4237 Punica granatum HOM05D001403 ORTHO05D001313 9.8e-09 63.2 66 62.1
Dinv04969 Davidia involucrata HOM05D001403 ORTHO05D001313 1.7e-08 62.4 82 54.9
BcaB06g29646 Brassica carinata HOM05D001403 ORTHO05D001313 2.9e-08 61.6 55 60.0
CARHR112020 Cardamine hirsuta HOM05D001403 ORTHO05D001313 2.9e-08 61.6 77 53.2
Actinidia32085 Actinidia chinensis HOM05D001403 ORTHO05D001313 3.7e-08 61.2 73 56.2
A04p15940 Brassica napus HOM05D001403 ORTHO05D001313 3.7e-08 61.2 55 60.0
Glyma.10G059500 Glycine max HOM05D001403 ORTHO05D001313 3.7e-08 61.2 56 66.1
TWI75G0899 Tripterygium wilfordii HOM05D001403 ORTHO05D001313 3.7e-08 61.2 76 52.6
BcaB08g34967 Brassica carinata HOM05D001403 ORTHO05D001313 4.9e-08 60.8 58 56.9
BraA04t17227Z Brassica rapa HOM05D001403 ORTHO05D001313 4.9e-08 60.8 55 60.0
MBI05_g33716_MAGBIO Magnolia biondii HOM05D001403 ORTHO05D001313 4.9e-08 60.8 78 53.8
Aa31LG7G15520 Aethionema arabicum HOM05D001403 ORTHO05D001313 6.4e-08 60.5 61 59.0
CAN.G588.24 Capsicum annuum HOM05D001403 ORTHO05D001313 6.4e-08 60.5 74 52.7
CsaV3_2G015690 Cucumis sativus L. HOM05D001403 ORTHO05D001313 6.4e-08 60.5 69 55.1
Glyma.13G146200 Glycine max HOM05D001403 ORTHO05D001313 8.3e-08 60.1 53 67.9
HanXRQChr17g0556391 Helianthus annuus HOM05D001403 ORTHO05D001313 8.3e-08 60.1 68 51.5
Lsat_1_v5_gn_8_125881 Lactuca sativa HOM05D001403 ORTHO05D001313 8.3e-08 60.1 58 53.4
Lj5A185T54 Lonicera japonica HOM05D001403 ORTHO05D001313 1.1e-07 59.7 64 57.8
SGA_v2.0_scaffold32G13234 Striga asiatica HOM05D001403 ORTHO05D001313 1.1e-07 59.7 58 62.1
MSTRG.5428 Avicennia marina HOM05D001403 ORTHO05D001313 1.9e-07 58.9 68 54.4
Solyc01g111120.4 Solanum lycopersicum HOM05D001403 ORTHO05D001313 1.9e-07 58.9 81 50.6
CDE05G3181 Ceratophyllum demersum HOM05D001403 ORTHO05D001313 2.4e-07 58.5 77 53.2
Manes.11G089900 Manihot esculenta HOM05D001403 ORTHO05D001313 2.4e-07 58.5 65 55.4
Atru.chr5.3225 Acer truncatum HOM05D001403 ORTHO05D001313 3.2e-07 58.2 55 58.2
Cc02_g16530 Coffea canephora HOM05D001403 ORTHO05D001313 3.2e-07 58.2 73 56.2
Oeu020689.3 Olea europaea HOM05D001403 ORTHO05D001313 3.2e-07 58.2 70 57.1
Sed0000953 Sechium edule HOM05D001403 ORTHO05D001313 3.2e-07 58.2 68 52.9
TAR376G1161 Trochodendron aralioides HOM05D001403 ORTHO05D001313 3.2e-07 58.2 80 53.8
HanXRQChr13g0389071 Helianthus annuus HOM05D001403 ORTHO05D001313 4.1e-07 57.8 71 47.9
Sopen01g053180 Solanum pennellii HOM05D001403 ORTHO05D001313 5.4e-07 57.4 69 52.2
vmacro02248 Vaccinium macrocarpon HOM05D001403 ORTHO05D001313 5.4e-07 57.4 81 54.3
EL10Ac9g21443 Beta vulgaris HOM05D001403 ORTHO05D001313 7.0e-07 57.0 79 51.9
Manes.04G078300 Manihot esculenta HOM05D001403 ORTHO05D001313 7.0e-07 57.0 56 57.1
Hund06403 Selenicereus undatus HOM05D001403 ORTHO05D001313 7.0e-07 57.0 58 60.3
PGSC0003DMG400001595 Solanum tuberosum HOM05D001403 ORTHO05D001313 7.0e-07 57.0 69 52.2
Actinidia27839 Actinidia chinensis HOM05D001403 ORTHO05D001313 1.2e-06 56.2 74 55.4
C04p50400 Brassica napus HOM05D001403 ORTHO05D001313 1.2e-06 56.2 55 56.4
BolC4t26638H Brassica oleracea HOM05D001403 ORTHO05D001313 1.2e-06 56.2 55 56.4
Eucgr.I01374 Eucalyptus grandis HOM05D001403 ORTHO05D001313 1.2e-06 56.2 71 52.1
unitig_21.g20804 Utricularia gibba HOM05D001403 ORTHO05D001313 1.2e-06 56.2 58 56.9
ClCG02G011400 Citrullus lanatus HOM05D001403 ORTHO05D001313 1.6e-06 55.8 69 52.2
Peaxi162Scf00362g01044 Petunia axillaris HOM05D001403 ORTHO05D001313 1.6e-06 55.8 82 47.6
Sc18g0006660 Simmondsia chinensis HOM05D001403 ORTHO05D001313 1.6e-06 55.8 63 57.1
PGSC0003DMG400004436 Solanum tuberosum HOM05D001403 ORTHO05D001313 2.0e-06 55.5 80 51.2
ECA233G4928 Erigeron canadensis HOM05D001403 ORTHO05D001313 3.5e-06 54.7 79 45.6
Nitab4.5_0000956g0160 Nicotiana tabacum HOM05D001403 ORTHO05D001313 4.6e-06 54.3 78 51.3
Sopen10g024790 Solanum pennellii HOM05D001403 ORTHO05D001313 4.6e-06 54.3 77 48.1
Nitab4.5_0000283g0100 Nicotiana tabacum HOM05D001403 ORTHO05D001313 7.8e-06 53.5 83 44.6
Nitab4.5_0000980g0170 Nicotiana tabacum HOM05D001403 ORTHO05D001313 7.8e-06 53.5 83 47.0


User provided reference genes

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