Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 1.7e-168 595.9 299 100.0
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 5.5e-167 590.9 299 99.0
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 3.4e-132 475.3 301 81.4
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 1.3e-110 403.7 302 72.8
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 3.4e-108 395.6 319 68.3
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 5.8e-100 368.2 260 75.4
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 6.5e-99 364.8 297 62.6
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 4.2e-98 362.1 297 61.6
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 1.2e-97 360.5 301 64.5
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 6.0e-97 358.2 298 62.1
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 5.1e-96 355.1 313 63.6
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 8.7e-96 354.4 293 62.5
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 1.6e-94 350.1 302 61.3
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 1.2e-92 344.0 312 59.0
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 1.0e-91 340.9 305 59.7
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.2e-91 339.7 303 59.4
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 3.8e-91 339.0 303 59.4
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 3.8e-91 339.0 299 59.5
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 6.5e-91 338.2 296 59.8
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 6.5e-91 338.2 304 58.9
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 8.5e-91 337.8 295 58.0
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 1.1e-90 337.4 297 59.9
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 5.5e-90 335.1 304 55.6
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 5.5e-90 335.1 300 60.7
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 1.2e-89 334.0 293 60.1
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 6.1e-89 331.6 295 59.7
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 3.9e-88 328.9 231 68.4
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 1.5e-87 327.0 316 58.9
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 1.5e-87 327.0 306 56.2
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 2.5e-87 326.2 309 55.0
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 5.7e-87 325.1 304 57.6
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 4.8e-86 322.0 295 58.0
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 1.8e-85 320.1 312 55.8
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 4.1e-85 318.9 307 55.4
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 5.3e-85 318.5 299 55.9
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 9.1e-85 317.8 298 57.0
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 1.5e-84 317.0 309 54.4
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 2.6e-84 316.2 275 64.7
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 4.5e-84 315.5 304 54.9
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 4.5e-84 315.5 307 54.7
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 1.7e-83 313.5 309 54.4
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 1.1e-82 310.8 301 55.8
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 1.9e-82 310.1 303 56.1
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 4.2e-82 308.9 261 60.2
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.2e-81 307.4 301 54.5
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 2.1e-81 306.6 298 56.7
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 1.4e-80 303.9 269 61.0
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 1.8e-80 303.5 272 59.9
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 5.1e-80 302.0 308 55.5
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 1.5e-79 300.4 294 55.4
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 2.0e-79 300.1 272 59.9
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 7.4e-79 298.1 304 52.6
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 9.1e-77 291.2 294 56.8
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 2.6e-76 289.7 297 52.9
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 7.7e-76 288.1 285 54.7
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.3e-75 287.3 234 61.5
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.7e-75 287.0 285 54.7
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 1.7e-75 287.0 273 56.8
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 1.4e-74 283.9 299 51.5
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 4.2e-74 282.3 231 60.6
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 1.2e-73 280.8 297 52.9
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 1.6e-73 280.4 305 53.4
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 3.6e-73 279.3 291 50.9
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 8.0e-73 278.1 301 52.2
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 8.0e-73 278.1 296 54.1
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 6.7e-72 275.0 292 50.7
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 2.0e-71 273.5 298 49.7
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.3e-71 272.7 273 54.6
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 4.4e-71 272.3 279 54.1
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 5.7e-71 271.9 293 51.5
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 1.3e-70 270.8 285 51.9
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 1.1e-69 267.7 291 49.8
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 9.1e-69 264.6 298 48.0
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 1.7e-67 260.4 306 50.3
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 2.2e-67 260.0 284 49.6
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 3.8e-67 259.2 297 50.8
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 5.0e-67 258.8 267 53.6
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 8.5e-67 258.1 299 47.8
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 3.2e-66 256.1 309 49.5
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 4.2e-66 255.8 299 47.8
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 2.1e-65 253.4 293 49.1
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 8.0e-65 251.5 255 53.7
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 1.5e-63 247.3 300 48.0
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 2.6e-63 246.5 231 60.2
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 5.7e-63 245.4 216 57.9
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 2.8e-62 243.0 298 45.6
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 1.2e-60 237.7 225 55.1
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 2.0e-60 236.9 225 55.1
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 3.5e-60 236.1 313 42.8
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 3.5e-60 236.1 226 54.0
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 2.2e-59 233.4 299 45.2
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 2.2e-59 233.4 134 85.8
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 3.8e-59 232.6 237 56.1
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 7.2e-58 228.4 289 48.8
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 9.4e-58 228.0 294 42.9
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 1.2e-57 227.6 304 45.1
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.6e-55 219.9 294 42.9
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 1.7e-54 217.2 251 47.8
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 1.8e-53 213.8 264 48.1
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 4.5e-52 209.1 266 46.2
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 3.6e-49 199.5 187 56.7
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 3.0e-48 196.4 220 48.2
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 3.7e-46 189.5 277 44.8
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 4.9e-46 189.1 227 51.5
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.1e-45 188.0 124 69.4
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 5.0e-43 179.1 303 39.6
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 2.1e-41 173.7 198 49.5
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 4.7e-41 172.6 293 41.6
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 8.0e-41 171.8 234 44.0
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 1.2e-39 167.9 138 63.8
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 4.6e-36 156.0 292 36.0
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 1.5e-34 151.0 103 72.8
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 4.3e-34 149.4 209 42.6
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 9.5e-34 148.3 110 62.7
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.7e-30 137.5 189 47.6
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 8.3e-30 135.2 298 31.9
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 1.6e-28 131.0 222 34.2
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 3.5e-28 129.8 271 37.6
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 5.1e-27 125.9 257 31.5
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 1.2e-23 114.8 120 50.0
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 1.6e-20 104.4 65 69.2
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 1.6e-20 104.4 65 69.2
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 3.0e-19 100.1 295 27.1
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 3.0e-19 100.1 67 70.1
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 8.9e-16 88.6 81 58.0
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 1.1e-08 65.1 132 33.3
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 1.7e-06 57.8 147 26.5


User provided reference genes

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