Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 0.0e+00 1278.5 637 100.0
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 6.8e-215 751.1 691 58.8
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 1.6e-195 686.8 656 57.2
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 4.5e-182 642.1 650 54.6
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 6.9e-175 618.2 594 56.4
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 2.5e-169 599.7 553 56.6
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 5.0e-165 585.5 648 50.3
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.8e-162 577.0 553 54.8
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 2.3e-162 576.6 555 55.1
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 1.1e-161 574.3 560 54.3
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.2e-155 554.3 558 52.7
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 4.8e-136 489.2 566 46.3
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 6.3e-136 488.8 650 43.5
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 4.1e-135 486.1 562 47.0
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 3.6e-131 473.0 566 45.6
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.4e-130 471.1 623 43.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.8e-130 470.7 591 44.7
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 3.0e-130 469.9 558 45.5
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 6.8e-130 468.8 623 43.3
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 1.5e-129 467.6 623 43.5
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 5.7e-129 465.7 580 45.0
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 1.7e-128 464.2 550 45.5
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 7.0e-127 458.8 568 44.7
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 2.3e-125 453.8 573 43.5
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.9e-125 453.4 574 44.9
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 8.6e-125 451.8 569 45.2
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.1e-124 451.4 569 47.3
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 1.5e-124 451.1 597 41.9
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 9.5e-124 448.4 575 44.7
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.0e-122 444.9 577 43.3
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 3.0e-122 443.4 567 43.9
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 5.2e-122 442.6 618 40.9
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 6.8e-122 442.2 566 45.1
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.6e-121 440.3 559 44.7
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.7e-120 437.6 581 43.0
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 6.4e-120 435.6 567 41.4
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.4e-119 433.7 568 44.0
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 5.4e-119 432.6 581 43.0
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 5.0e-117 426.0 582 42.4
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 3.6e-115 419.9 556 41.5
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.0e-114 418.3 593 41.8
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 1.4e-114 417.9 539 43.4
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 4.0e-114 416.4 566 41.7
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.5e-113 414.5 570 41.4
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.3e-112 411.4 569 42.0
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 3.7e-112 409.8 565 40.9
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 3.7e-112 409.8 584 40.4
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 4.9e-112 409.5 534 42.5
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 8.3e-112 408.7 567 40.4
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 1.1e-111 408.3 544 42.5
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.4e-111 407.9 527 41.7
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 3.2e-111 406.8 572 40.4
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 9.2e-111 405.2 537 43.0
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 1.2e-110 404.8 552 40.8
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 1.2e-110 404.8 565 41.8
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 1.6e-110 404.4 553 40.9
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.7e-109 401.0 569 40.2
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 3.0e-109 400.2 557 41.5
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.3e-108 396.4 540 42.2
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 8.1e-107 392.1 540 41.5
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 3.1e-106 390.2 544 41.4
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 5.8e-105 386.0 577 38.5
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.3e-104 384.8 564 39.5
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 3.7e-104 383.3 566 39.8
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 7.8e-102 375.6 609 38.9
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 1.7e-101 374.4 562 39.5
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 6.6e-101 372.5 579 37.1
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 4.3e-100 369.8 535 39.8
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 5.6e-100 369.4 562 39.3
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 8.1e-99 365.5 546 38.3
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.3e-98 364.0 608 37.5
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 4.1e-95 353.2 504 42.5
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 1.9e-92 344.4 603 35.7
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.2e-89 335.1 389 48.8
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 2.6e-89 334.0 476 41.8
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 9.9e-89 332.0 554 36.8
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 9.9e-89 332.0 489 41.9
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 3.8e-88 330.1 508 38.6
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 6.4e-88 329.3 511 38.2
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 1.2e-86 325.1 443 43.8
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 7.3e-84 315.8 388 46.1
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 8.1e-83 312.4 510 38.4
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 7.6e-81 305.8 589 34.1
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 1.7e-80 304.7 477 39.0
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 6.4e-80 302.8 570 34.0
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 3.2e-79 300.4 561 35.7
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 6.0e-78 296.2 568 32.0
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 8.1e-75 285.8 379 43.5
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 2.6e-73 280.8 366 42.6
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.7e-72 278.1 356 43.5
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.1e-71 275.4 470 37.9
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 7.1e-71 272.7 565 32.6
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 4.6e-70 270.0 524 33.2
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 7.4e-68 262.7 458 37.1
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 7.4e-68 262.7 532 33.8
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 4.5e-65 253.4 632 30.1
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.4e-63 248.4 521 31.5
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.6e-62 245.0 649 29.1
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 2.4e-58 231.1 315 44.8
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 5.0e-56 223.4 325 39.4
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.6e-54 218.4 266 46.6
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 5.1e-53 213.4 328 40.2
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 8.7e-53 212.6 349 35.8
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.2e-43 181.4 272 40.8
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.7e-43 180.6 238 41.2
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 6.1e-38 163.3 123 58.5
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 1.7e-35 155.2 146 45.9
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 8.2e-35 152.9 658 24.0
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.6e-33 148.7 122 55.7
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 2.0e-33 148.3 116 56.9
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 2.9e-32 144.4 101 68.3
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.1e-31 142.5 161 47.2
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.9e-31 141.7 111 55.9
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 5.5e-31 140.2 125 50.4
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 1.2e-30 139.0 100 60.0
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 1.2e-30 139.0 119 56.3
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 3.0e-29 134.4 152 47.4
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 2.6e-28 131.3 120 50.0
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 3.7e-27 127.5 117 53.0
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 4.1e-26 124.0 190 32.6
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 1.0e-24 119.4 185 41.6
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 1.1e-23 115.9 101 47.5
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 2.1e-22 111.7 109 45.0
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 3.0e-21 107.8 476 24.6
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.6e-20 104.8 126 42.9
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 5.7e-20 103.6 82 52.4
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 5.7e-20 103.6 106 52.8
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 6.3e-19 100.1 91 49.5
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 2.7e-17 94.7 165 36.4
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.5e-17 94.0 109 38.5
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 1.7e-16 92.0 82 54.9
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 5.0e-16 90.5 169 33.7
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 6.5e-16 90.1 82 53.7
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-14 85.5 74 52.7
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.6e-14 85.5 74 52.7
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 2.1e-14 85.1 84 50.0
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.8e-13 82.0 145 32.4
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.0e-13 80.9 78 51.3
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 5.2e-13 80.5 114 36.8
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 1.5e-12 79.0 91 48.4
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 5.7e-12 77.0 90 41.1
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.3e-11 75.9 62 50.0
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 4.9e-11 73.9 61 67.2
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.1e-10 72.8 76 39.5
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 1.8e-10 72.0 102 39.2
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 3.1e-10 71.2 146 39.7
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.6e-09 68.9 57 54.4
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 5.9e-09 67.0 47 66.0
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 1.1e-07 62.8 54 57.4
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.1e-07 62.8 46 52.2
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.6e-07 60.5 108 28.7


User provided reference genes

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