Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 1.6e-156 557.4 291 100.0
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 4.8e-113 412.9 295 76.6
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 2.9e-110 403.7 298 75.2
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 6.4e-110 402.5 300 73.7
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 6.4e-110 402.5 300 73.7
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 4.2e-109 399.8 303 73.6
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 4.6e-108 396.4 302 73.5
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 6.0e-108 396.0 294 73.8
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 4.3e-106 389.8 304 71.1
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 4.8e-105 386.3 301 69.4
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 4.0e-104 383.3 299 69.6
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 5.3e-104 382.9 305 69.5
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 2.1e-100 370.9 291 67.7
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 3.7e-97 360.1 319 64.6
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 1.1e-96 358.6 317 65.0
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 3.8e-94 350.1 304 65.5
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 4.2e-93 346.7 257 73.2
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 5.5e-93 346.3 306 66.7
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 9.3e-93 345.5 324 61.7
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 1.3e-91 341.7 255 72.2
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 1.3e-91 341.7 291 64.9
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 5.1e-91 339.7 248 75.4
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 8.7e-91 339.0 294 63.9
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 1.9e-90 337.8 328 61.9
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 4.3e-90 336.7 297 62.3
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 5.7e-90 336.3 245 75.1
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 5.7e-90 336.3 245 75.1
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 5.7e-90 336.3 314 60.5
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 5.7e-90 336.3 297 64.3
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 7.4e-90 335.9 295 65.8
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 1.3e-89 335.1 298 62.4
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 1.3e-89 335.1 240 73.8
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.7e-89 334.7 311 62.4
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 4.8e-89 333.2 304 62.5
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 4.8e-89 333.2 301 64.5
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 6.3e-89 332.8 297 62.3
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 6.3e-89 332.8 311 62.4
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 1.1e-88 332.0 289 63.0
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 1.4e-88 331.6 240 72.9
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.8e-88 331.3 240 75.4
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 6.9e-88 329.3 243 74.9
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 2.0e-87 327.8 229 75.5
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 3.4e-87 327.0 245 71.0
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.1e-85 322.0 245 71.8
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 1.4e-85 321.6 264 65.2
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 2.5e-85 320.9 242 70.2
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 2.5e-85 320.9 316 59.5
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 7.2e-85 319.3 320 60.0
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 3.6e-84 317.0 248 71.4
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 4.7e-84 316.6 243 66.7
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 4.7e-84 316.6 247 66.8
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 6.1e-84 316.2 248 66.5
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 6.1e-84 316.2 285 60.7
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 1.0e-83 315.5 294 61.9
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 3.0e-83 313.9 242 68.2
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 3.0e-83 313.9 284 64.8
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 3.9e-83 313.5 243 67.1
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 5.1e-83 313.2 296 58.8
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 5.1e-83 313.2 244 68.9
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 8.8e-83 312.4 232 74.1
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 8.8e-83 312.4 238 67.6
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 8.8e-83 312.4 242 66.5
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 1.5e-82 311.6 303 56.8
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 1.5e-82 311.6 303 56.8
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 1.5e-82 311.6 292 59.6
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 2.0e-82 311.2 235 68.5
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 3.3e-82 310.5 258 63.2
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 4.4e-82 310.1 249 64.7
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 5.7e-82 309.7 242 65.7
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 1.7e-81 308.1 271 60.5
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 1.7e-81 308.1 255 64.7
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 2.2e-81 307.8 284 59.2
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 3.7e-81 307.0 242 66.1
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 4.8e-81 306.6 249 64.3
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 1.4e-80 305.1 303 56.1
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 1.4e-80 305.1 303 56.1
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 1.4e-80 305.1 303 56.1
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 1.4e-80 305.1 257 63.8
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 2.4e-80 304.3 258 63.6
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 2.6e-79 300.8 299 56.9
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 2.6e-79 300.8 237 66.2
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 5.9e-79 299.7 237 65.8
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 7.7e-79 299.3 291 57.7
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 1.0e-78 298.9 299 58.2
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 2.2e-78 297.7 239 64.9
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 2.9e-78 297.4 239 66.1
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 6.5e-78 296.2 290 58.6
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 1.1e-77 295.4 235 66.4
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 1.9e-77 294.7 240 64.6
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 1.4e-75 288.5 239 65.3
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 3.0e-75 287.3 222 67.1
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 4.4e-74 283.5 282 56.4
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 9.7e-74 282.3 301 55.1
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 3.7e-73 280.4 232 65.5
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 4.8e-73 280.0 277 55.6
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 4.8e-73 280.0 273 56.4
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 2.5e-69 267.7 259 58.3
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 2.7e-68 264.2 237 58.2
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 1.2e-60 238.8 153 79.1
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.6e-55 221.9 173 71.1
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 9.2e-48 196.1 148 64.2
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 1.3e-46 192.2 191 57.6
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 5.8e-42 176.8 296 40.5
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 1.8e-35 155.2 200 43.0
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 1.3e-30 139.0 188 44.1
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 7.1e-24 116.7 281 33.8
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 3.9e-22 110.9 176 34.7
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 5.1e-22 110.5 200 33.5
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 1.5e-21 109.0 239 36.0
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 1.4e-19 102.4 174 31.0
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 5.1e-14 84.0 46 87.0
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 5.1e-14 84.0 46 87.0
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 4.3e-13 80.9 45 86.7
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 2.1e-12 78.6 57 63.2
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 2.1e-12 78.6 44 84.1
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.8e-11 75.5 54 72.2
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 2.6e-10 71.6 43 76.7
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 4.2e-08 64.3 45 64.4
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 1.2e-07 62.8 104 33.7
AUR62038945 Chenopodium quinoa HOM05D002479 ORTHO05D002675 1.2e-07 62.8 104 33.7
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 2.7e-07 61.6 37 78.4
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 2.3e-06 58.5 104 31.7
Aqoxy1G01503 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 3.0e-06 58.2 113 31.0
Aqoxy1G01507 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 3.0e-06 58.2 113 31.0
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 3.9e-06 57.8 273 23.8
SMO353G0107 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 6.6e-06 57.0 126 26.2


User provided reference genes

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