Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 0.0e+00 1163.3 597 100.0
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 1.0e-276 956.4 615 82.1
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 5.5e-275 950.7 604 83.1
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 5.9e-269 930.6 624 79.6
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 2.2e-268 928.7 614 80.6
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 9.1e-262 906.7 613 79.1
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.0e-260 903.3 615 78.9
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 4.2e-259 897.9 620 77.3
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 7.5e-248 860.5 632 74.4
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 9.8e-248 860.1 659 71.2
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 2.8e-234 815.5 615 73.2
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 3.1e-233 812.0 485 85.2
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 7.0e-230 800.8 627 70.0
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 8.9e-225 783.9 618 69.1
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.5e-224 783.1 618 70.4
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 7.5e-224 780.8 617 68.9
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.3e-223 780.0 637 68.1
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.9e-223 778.9 618 69.1
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 2.1e-221 772.7 627 67.6
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 4.6e-221 771.5 619 68.8
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 1.7e-220 769.6 627 67.8
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 3.0e-220 768.8 607 69.0
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 6.6e-220 767.7 624 67.3
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 1.9e-219 766.1 628 67.7
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 1.9e-219 766.1 617 67.4
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 1.2e-218 763.5 626 67.3
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.2e-218 763.5 616 66.6
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 2.8e-218 762.3 616 66.7
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 3.6e-218 761.9 618 67.8
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 2.3e-217 759.2 630 65.6
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.2e-217 758.1 626 67.7
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 9.2e-214 747.3 618 65.7
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 2.1e-213 746.1 617 67.3
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 7.8e-213 744.2 617 64.7
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.1e-211 740.3 656 64.3
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 1.8e-209 733.0 613 65.4
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.8e-209 733.0 605 67.1
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 9.0e-209 730.7 615 66.5
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 9.0e-209 730.7 609 66.2
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.5e-208 729.9 618 65.0
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 9.9e-208 727.2 614 65.0
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 8.4e-207 724.2 606 65.3
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 1.1e-206 723.8 607 66.6
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 9.3e-206 720.7 630 65.7
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 1.2e-205 720.3 657 61.6
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.6e-205 719.9 621 64.4
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 2.1e-205 719.5 602 66.6
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.1e-205 719.5 621 64.1
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.3e-204 716.1 615 64.4
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 1.9e-203 713.0 617 63.9
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 8.1e-202 707.6 612 64.1
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 1.8e-201 706.4 514 73.9
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 9.0e-201 704.1 615 63.6
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 2.0e-200 703.0 636 62.6
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 4.5e-200 701.8 618 63.6
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 5.8e-200 701.4 612 64.4
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.7e-199 699.9 620 62.7
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 7.1e-198 694.5 628 62.3
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 9.3e-198 694.1 620 63.1
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 1.6e-197 693.3 614 62.7
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 2.1e-197 693.0 609 62.6
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 3.5e-197 692.2 609 62.2
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 4.6e-197 691.8 619 61.2
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 7.9e-197 691.0 609 62.6
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-196 689.5 609 62.1
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 3.0e-196 689.1 606 62.2
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 3.9e-196 688.7 621 62.0
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 7.4e-195 684.5 639 62.3
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 8.1e-194 681.0 619 61.1
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.5e-192 676.8 557 66.6
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-192 676.8 609 61.4
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 3.4e-192 675.6 602 62.8
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 5.8e-192 674.9 618 61.3
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 5.5e-190 668.3 613 59.2
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 2.1e-189 666.4 613 59.7
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 1.0e-188 664.1 611 59.2
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 2.3e-188 662.9 612 62.1
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 3.0e-188 662.5 608 60.0
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 5.1e-188 661.8 613 59.4
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 1.5e-187 660.2 611 58.8
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 9.6e-187 657.5 623 59.6
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.6e-186 656.8 638 58.2
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.8e-186 656.0 642 59.0
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.8e-185 653.3 569 64.5
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 4.5e-184 648.7 612 60.9
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 8.4e-183 644.4 627 60.4
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.9e-182 643.3 630 59.8
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 9.7e-179 630.9 617 59.8
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.3e-178 630.6 633 57.7
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 8.2e-178 627.9 564 61.5
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 1.5e-176 623.6 626 58.3
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 2.9e-175 619.4 600 57.8
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 5.0e-175 618.6 529 64.7
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 2.7e-173 612.8 616 56.3
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 3.6e-173 612.5 560 59.8
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-169 600.9 586 58.2
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.8e-167 592.4 582 59.5
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.4e-166 590.5 619 54.9
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 8.8e-164 581.3 619 54.6
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 2.4e-161 573.2 527 60.9
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 3.1e-161 572.8 560 57.1
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 7.7e-160 568.2 633 54.7
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 7.2e-158 561.6 548 58.9
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 8.2e-154 548.1 398 72.4
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 5.9e-152 542.0 586 55.3
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 4.2e-142 509.2 340 77.9
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 5.5e-142 508.8 339 77.6
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.0e-135 488.0 319 78.1
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-135 487.6 594 49.7
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 6.5e-135 485.3 336 72.9
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 8.0e-133 478.4 519 53.4
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.8e-129 467.2 435 59.8
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 5.0e-127 459.1 629 47.9
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.2e-124 449.1 503 54.9
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 2.0e-123 447.2 507 52.1
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 8.1e-109 398.7 400 58.2
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 4.4e-107 392.9 655 40.9
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-96 358.2 364 55.8
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 1.2e-93 348.2 376 56.4
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.2e-93 345.9 311 65.0
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 6.9e-92 342.4 278 67.6
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 1.9e-86 324.3 196 85.7
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 7.3e-86 322.4 609 37.6
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.1e-84 317.0 324 57.7
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 1.8e-79 301.2 669 34.8
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 3.9e-79 300.1 365 47.7
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 2.1e-77 294.3 256 65.6
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 2.4e-76 290.8 229 68.6
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 1.9e-70 271.2 226 59.7
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 4.2e-65 253.4 274 54.4
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 3.3e-62 243.8 274 55.5
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 3.1e-60 237.3 748 30.1
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.0e-59 234.6 240 54.2
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 1.3e-58 231.9 263 53.6
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 1.7e-58 231.5 263 52.5
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.1e-54 218.8 281 52.0
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 8.2e-53 212.6 242 50.8
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.8e-52 211.5 273 49.5
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.9e-49 201.4 272 46.0
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.4e-47 195.3 106 92.5
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 5.1e-47 193.4 119 79.8
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 4.4e-46 190.3 271 45.8
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.3e-45 188.7 149 69.8
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 1.6e-40 171.8 270 41.5
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 6.1e-40 169.9 110 78.2
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 6.3e-37 159.8 137 64.2
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.3e-34 152.1 319 35.1
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 3.6e-32 144.1 397 32.0
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 6.1e-32 143.3 75 97.3
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 1.4e-31 142.1 81 91.4
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 1.4e-31 142.1 75 97.3
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-29 135.6 209 49.8
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 3.1e-28 131.0 126 60.3
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.0e-28 129.8 166 50.6
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.1e-28 129.4 194 44.3
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 4.5e-27 127.1 299 37.1
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 5.9e-27 126.7 242 35.5
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 4.2e-25 120.6 155 46.5
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 6.1e-24 116.7 152 43.4
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 8.8e-23 112.8 111 56.8
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 2.4e-20 104.8 435 28.0
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 2.4e-20 104.8 124 40.3
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 5.4e-20 103.6 151 47.7
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.6e-19 102.1 144 47.9
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 2.7e-19 101.3 252 30.6
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.0e-18 99.4 147 46.3
Ca_24313_v3 Cicer arietinum L. HOM05D000703 ORTHO05D004367 2.3e-15 88.2 53 84.9
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 5.2e-15 87.0 128 48.4
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-14 85.1 77 58.4
Rhsim02G0239300 Rhododendron simsii HOM05D003724 ORTHO05D004367 7.3e-09 66.6 39 79.5
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 2.3e-07 61.6 47 68.1
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 2.6e-06 58.2 38 86.8
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 3.4e-06 57.8 73 46.6
PSO561G0043 Papaver somniferum HOM05D003724 ORTHO05D004367 5.8e-06 57.0 93 40.9
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 7.5e-06 56.6 38 84.2


User provided reference genes

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