Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 3.4e-147 525.0 274 100.0
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 1.1e-132 476.9 274 89.4
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 6.7e-127 457.6 274 88.0
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 6.3e-125 451.1 275 86.5
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 1.4e-124 449.9 274 86.5
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 2.6e-123 445.7 274 86.1
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 2.1e-120 436.0 276 85.5
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 1.4e-119 433.3 275 84.4
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 1.4e-119 433.3 276 85.5
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 2.4e-116 422.5 279 82.8
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 4.1e-116 421.8 276 83.3
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 7.7e-115 417.5 275 82.5
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.7e-114 416.4 276 81.9
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 2.2e-114 416.0 278 82.4
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 2.9e-114 415.6 279 81.4
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 2.9e-114 415.6 276 81.5
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 5.0e-114 414.8 278 80.9
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 1.1e-113 413.7 278 81.7
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 7.2e-113 411.0 277 80.9
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 9.4e-113 410.6 278 79.9
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 1.6e-112 409.8 268 83.2
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.1e-112 409.5 277 80.5
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 2.1e-112 409.5 280 80.7
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 4.7e-112 408.3 276 79.7
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 8.0e-112 407.5 278 79.5
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 8.0e-112 407.5 278 79.5
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 8.0e-112 407.5 278 79.5
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 1.4e-111 406.8 278 80.6
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.4e-111 406.8 278 79.5
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 2.3e-111 406.0 276 80.4
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.0e-111 405.6 276 80.4
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.0e-111 405.2 278 79.1
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.0e-111 405.2 278 79.1
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 6.7e-111 404.4 283 78.4
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 2.0e-110 402.9 276 81.2
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 2.6e-110 402.5 280 78.2
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 3.3e-110 402.1 276 77.5
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.7e-109 399.8 273 77.3
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 2.8e-109 399.1 271 80.8
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 3.7e-109 398.7 275 76.4
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 4.8e-109 398.3 278 78.4
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 6.3e-109 397.9 280 76.8
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 6.3e-109 397.9 275 76.0
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 8.2e-109 397.5 275 78.5
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.1e-108 397.1 274 76.3
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 1.8e-108 396.4 274 77.7
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.4e-108 396.0 275 78.9
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.4e-108 396.0 275 78.9
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 3.1e-108 395.6 275 79.3
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 3.1e-108 395.6 273 76.6
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 4.1e-108 395.2 276 79.3
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 1.2e-107 393.7 277 78.3
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 1.0e-106 390.6 274 77.7
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.7e-106 389.8 275 77.8
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.7e-106 389.8 277 77.6
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 3.8e-106 388.7 278 77.0
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 8.5e-106 387.5 279 77.8
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 1.1e-105 387.1 276 76.1
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.5e-105 386.7 279 76.0
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 3.2e-105 385.6 278 77.0
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 3.2e-105 385.6 278 77.0
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 3.2e-105 385.6 276 77.5
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 2.1e-104 382.9 275 75.3
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 2.7e-104 382.5 284 75.0
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 3.6e-104 382.1 284 74.6
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 3.6e-104 382.1 284 74.6
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 4.7e-104 381.7 276 78.3
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 8.0e-104 380.9 274 78.1
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 2.3e-103 379.4 273 75.8
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.3e-103 379.4 282 75.5
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 2.3e-103 379.4 275 77.5
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 8.8e-103 377.5 274 74.8
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 1.5e-102 376.7 276 76.4
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 2.0e-102 376.3 271 76.0
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 2.6e-102 375.9 277 76.5
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 4.4e-102 375.2 274 76.3
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 4.4e-102 375.2 274 76.6
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 4.4e-102 375.2 273 75.1
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 5.7e-102 374.8 278 75.5
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 7.5e-102 374.4 274 76.3
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 7.5e-102 374.4 274 76.3
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 9.8e-102 374.0 276 75.7
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 9.8e-102 374.0 276 75.7
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 9.8e-102 374.0 278 74.8
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 1.3e-101 373.6 276 74.3
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.7e-101 373.2 269 75.5
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.7e-101 373.2 269 75.5
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 2.8e-101 372.5 274 76.3
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 2.8e-101 372.5 274 76.3
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 2.8e-101 372.5 274 76.3
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 2.8e-101 372.5 274 76.3
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 2.8e-101 372.5 282 73.8
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 2.8e-101 372.5 279 75.3
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 3.7e-101 372.1 273 76.2
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 4.8e-101 371.7 276 75.4
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 4.8e-101 371.7 247 81.8
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 6.3e-101 371.3 276 75.0
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 6.3e-101 371.3 273 74.4
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 6.3e-101 371.3 272 73.5
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 1.4e-100 370.2 274 73.7
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.8e-100 369.8 251 78.5
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 2.4e-100 369.4 273 74.0
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 2.4e-100 369.4 281 74.7
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 9.1e-100 367.5 277 74.0
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 4.5e-99 365.2 291 72.5
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 7.7e-99 364.4 279 72.8
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 1.3e-98 363.6 236 80.1
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 1.7e-98 363.2 276 72.1
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 2.9e-98 362.5 277 72.6
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 8.6e-98 360.9 275 73.1
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 1.1e-97 360.5 272 73.9
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.1e-96 356.3 274 71.5
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.8e-95 353.2 200 89.5
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.8e-95 353.2 217 83.4
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 6.8e-95 351.3 282 69.9
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 1.2e-91 340.5 278 68.3
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 4.5e-91 338.6 195 87.2
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.1e-89 334.0 251 70.1
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 1.4e-84 317.0 198 86.4
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 9.2e-84 314.3 269 64.7
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 1.7e-82 310.1 200 78.0
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.9e-81 306.6 239 67.4
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.4e-76 289.7 240 69.2
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 4.1e-76 288.9 171 85.4
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 3.6e-72 275.8 194 76.8
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 3.0e-66 256.1 196 77.6
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 1.8e-63 246.9 135 93.3
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 4.0e-63 245.7 164 79.9
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 8.4e-61 238.0 162 71.6
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 4.3e-57 225.7 274 52.9
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.8e-55 220.3 165 66.7
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 2.1e-51 206.8 233 58.4
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 4.6e-43 179.1 155 69.7
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 9.6e-41 171.4 122 73.0
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 2.0e-38 163.7 97 83.5
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.9e-37 159.1 185 50.3
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.9e-37 159.1 185 50.3
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 2.6e-22 110.2 113 60.2
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.7e-21 107.5 82 74.4
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.7e-11 72.8 182 32.4
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 6.1e-11 72.4 184 31.0
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.7e-08 63.2 38 78.9
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.4e-07 61.2 38 81.6
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 6.9e-07 58.9 60 48.3


User provided reference genes

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