Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 2400.2 1198 100.0
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 2142.1 1198 87.8
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 2131.3 1214 86.9
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 2126.7 1198 87.6
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 2120.9 1198 87.6
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 2118.2 1199 86.6
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 2107.4 1198 86.6
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 2095.5 1198 85.6
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 2088.9 1198 85.6
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 2065.4 1196 84.6
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 2031.9 1199 82.2
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 2028.8 1225 81.7
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1978.8 1202 81.3
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1805.4 1202 73.1
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1802.7 1202 73.4
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1787.3 1201 71.7
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1782.3 1201 73.2
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1764.6 1202 71.2
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1760.0 1195 71.2
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1751.9 1200 71.2
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1750.7 1204 70.8
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1749.2 1204 70.6
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1748.8 1199 70.6
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1747.3 1202 71.0
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1740.3 1199 69.9
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1738.8 1205 70.6
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1735.7 1199 69.7
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1733.8 1188 71.2
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1730.3 1196 70.3
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1727.6 1196 70.3
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1727.6 1200 69.8
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1724.1 1196 70.3
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1723.4 1185 70.4
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1720.7 1199 69.1
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1713.0 1203 69.4
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1711.4 1239 68.0
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1709.5 1203 70.0
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1696.4 1193 69.2
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1691.8 1196 68.7
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1687.9 1197 68.4
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1683.7 1202 67.9
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1680.6 1193 68.3
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1660.6 1178 67.4
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1651.7 1197 66.7
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1645.2 1209 66.3
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1642.9 1309 62.9
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1631.7 1207 66.1
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1627.5 1196 66.4
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1621.7 1185 66.2
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1617.4 1200 65.2
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1613.2 1191 66.3
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1612.8 1194 65.7
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1609.3 1197 65.9
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1588.2 1195 64.1
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1587.8 1199 64.2
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1584.7 1213 63.7
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1583.2 1199 64.7
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1579.3 1206 63.4
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1578.1 1185 65.4
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1573.1 1205 62.7
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1571.6 1201 62.8
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1571.6 1199 63.1
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1567.0 1205 62.3
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1565.1 1249 61.3
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1564.7 1191 63.1
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1564.3 1206 63.4
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1563.1 1133 66.7
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1562.4 1202 62.6
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1562.4 1196 64.5
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1561.2 1193 63.1
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1561.2 1192 62.9
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1557.3 1194 63.1
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1553.5 1193 62.8
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1552.3 1193 62.8
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1552.3 1192 64.5
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1551.6 1197 63.7
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1549.6 1191 62.6
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1549.3 1162 64.5
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1543.9 1178 63.5
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1541.9 1203 62.0
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1540.0 1217 61.7
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1538.5 1023 73.0
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1534.2 1154 64.6
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1530.8 1267 60.4
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1527.7 1184 63.5
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1509.2 1238 60.2
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1506.1 1187 62.2
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1481.5 1193 61.0
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1475.3 1254 58.4
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1474.5 1194 60.5
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1415.6 1282 56.4
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1406.7 1024 67.1
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1403.3 1177 57.7
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1401.3 1194 57.5
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1378.6 1212 56.4
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1364.4 969 68.3
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1351.7 1201 59.6
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1317.0 987 65.8
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1280.8 1192 56.5
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1242.3 1192 54.7
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1188.7 1202 50.4
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1186.0 1199 51.5
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1172.1 1222 50.6
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1168.3 1191 49.7
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1161.0 833 67.8
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1109.0 1185 47.2
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1084.7 855 64.4
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.7e-291 1006.5 711 68.1
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 6.7e-288 994.6 761 63.5
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 6.9e-269 931.4 717 64.0
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 3.7e-254 882.5 1069 44.2
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 2.5e-234 816.6 1103 40.9
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 3.0e-224 783.1 1179 40.8
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 6.8e-224 781.9 580 65.5
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 4.3e-202 709.5 567 63.7
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 8.1e-201 705.3 491 69.2
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.1e-194 684.9 754 50.0
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.4e-189 667.9 485 67.6
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 6.7e-155 552.7 394 68.5
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 2.6e-138 497.7 411 61.1
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 4.1e-128 463.8 591 43.8
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.6e-116 425.2 715 36.9
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 2.0e-98 365.2 259 68.0
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 8.9e-91 339.7 223 81.2
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.1e-85 322.8 370 45.9
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 3.6e-76 291.2 274 55.5
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 2.0e-66 258.8 236 60.6
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 5.6e-61 240.7 175 66.9
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 2.2e-57 228.8 286 42.3
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 1.3e-52 213.0 294 40.5
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 1.8e-43 182.6 133 63.2
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 1.5e-34 152.9 510 30.4
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 3.4e-34 151.8 156 55.8
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 9.7e-29 133.7 167 43.7
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 3.0e-14 85.5 206 30.6
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 2.6e-13 82.4 60 66.7
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 8.3e-12 77.4 92 44.6
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 9.1e-11 73.9 128 31.2
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 6.5e-09 67.8 70 54.3
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 8.5e-09 67.4 94 44.7
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.1e-08 67.0 105 37.1
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 6.1e-07 61.2 53 52.8
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 1.4e-06 60.1 59 52.5


User provided reference genes

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