Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 6.4e-227 790.4 404 100.0
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 7.5e-167 590.9 406 77.1
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 6.1e-161 571.2 403 74.2
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 2.0e-156 556.2 407 71.0
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 8.6e-155 550.8 418 69.9
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 1.9e-154 549.7 423 69.3
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 7.3e-154 547.7 407 72.2
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 9.5e-154 547.4 406 71.2
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 4.4e-151 538.5 408 69.4
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 3.2e-149 532.3 408 67.9
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 7.0e-149 531.2 409 69.4
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 7.0e-149 531.2 419 69.9
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.0e-148 529.6 405 68.9
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 3.5e-148 528.9 408 69.1
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 3.5e-148 528.9 409 67.5
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 6.0e-148 528.1 405 68.6
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 7.8e-148 527.7 407 67.6
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 5.0e-147 525.0 405 67.9
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 5.6e-146 521.5 406 67.2
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 4.7e-145 518.5 376 71.5
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 2.2e-142 509.6 415 66.0
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 6.4e-142 508.1 402 66.2
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 1.4e-141 506.9 401 66.1
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 5.1e-139 498.4 405 64.4
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 6.6e-139 498.0 406 63.1
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 7.3e-138 494.6 410 67.6
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.8e-137 492.7 402 63.4
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 3.6e-137 492.3 402 63.4
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 3.1e-136 489.2 402 63.7
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.0e-135 486.5 540 53.1
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.0e-135 486.5 540 53.1
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 3.8e-134 482.3 407 63.1
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 7.8e-132 474.6 408 60.8
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 4.3e-130 468.8 412 61.2
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 4.3e-130 468.8 368 67.1
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 7.3e-130 468.0 413 60.5
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 9.6e-130 467.6 423 59.1
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.2e-129 467.2 358 70.4
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 2.1e-129 466.5 414 60.6
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 1.1e-128 464.2 413 60.0
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.4e-128 463.8 414 60.1
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.8e-128 463.4 500 54.8
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 2.4e-128 463.0 406 61.6
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 9.0e-128 461.1 403 61.3
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.2e-127 460.7 371 65.0
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 1.2e-127 460.7 406 61.1
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 9.9e-127 457.6 442 58.6
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 1.7e-126 456.8 373 64.9
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 1.1e-125 454.1 402 61.4
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 1.4e-125 453.8 405 60.7
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.4e-125 453.0 400 63.2
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.2e-125 452.2 411 60.6
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 4.2e-125 452.2 399 60.7
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 9.3e-125 451.1 406 60.8
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.6e-124 450.3 402 60.2
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.1e-124 449.9 402 61.2
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 2.7e-124 449.5 389 64.8
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 3.5e-124 449.1 403 60.8
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 1.3e-123 447.2 408 58.6
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.7e-123 446.8 406 58.4
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.7e-123 446.8 360 63.9
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 1.7e-123 446.8 404 60.9
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 5.1e-123 445.3 402 59.5
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 5.1e-123 445.3 400 62.0
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 4.3e-122 442.2 405 57.5
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 5.6e-122 441.8 402 60.0
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 1.3e-121 440.7 397 60.5
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 1.6e-121 440.3 403 59.3
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 1.6e-121 440.3 410 58.5
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 8.1e-121 438.0 398 58.5
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 4.0e-120 435.6 411 57.7
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 5.3e-120 435.3 395 59.2
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 2.6e-119 433.0 404 59.7
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 2.6e-119 433.0 404 59.7
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 4.5e-119 432.2 407 57.5
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.5e-119 432.2 408 59.6
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 4.5e-119 432.2 403 59.6
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 4.5e-119 432.2 403 59.6
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 4.5e-119 432.2 403 59.6
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 2.9e-118 429.5 400 57.8
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 6.4e-118 428.3 397 56.9
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 1.9e-117 426.8 406 57.1
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 1.9e-117 426.8 400 57.2
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 1.9e-117 426.8 400 57.5
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 2.4e-117 426.4 401 58.1
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 3.2e-117 426.0 394 58.4
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 4.2e-117 425.6 403 57.6
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 7.1e-117 424.9 394 56.9
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 9.3e-117 424.5 404 57.9
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 9.3e-117 424.5 408 55.4
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.2e-116 424.1 395 59.7
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.1e-116 423.3 405 56.3
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 3.5e-116 422.5 408 56.9
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 1.0e-115 421.0 410 56.1
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 3.0e-115 419.5 465 51.4
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 3.9e-115 419.1 405 58.3
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 3.9e-115 419.1 411 56.4
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 8.7e-115 417.9 439 54.7
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 9.6e-114 414.5 418 56.2
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 1.6e-113 413.7 423 53.7
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.1e-113 413.3 443 52.6
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 2.0e-111 406.8 408 55.6
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.7e-110 403.7 398 55.8
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 2.9e-110 402.9 373 62.2
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 3.8e-110 402.5 395 54.9
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 3.8e-110 402.5 402 54.0
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.6e-108 397.1 405 54.3
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 6.7e-107 391.7 364 59.1
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.3e-105 387.5 528 44.3
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 1.2e-103 380.9 351 58.4
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 1.3e-97 360.9 398 51.5
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 9.3e-93 344.7 399 51.1
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 7.9e-92 341.7 242 70.7
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 5.1e-91 339.0 417 47.5
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 4.2e-85 319.3 223 73.1
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 3.6e-84 316.2 226 69.9
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 2.3e-83 313.5 410 44.9
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 3.0e-83 313.2 412 44.4
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 3.0e-83 313.2 400 47.5
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 2.8e-73 280.0 325 50.8
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 2.8e-65 253.4 371 41.0
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.4e-64 251.1 339 47.5
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 1.8e-64 250.8 269 54.6
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 4.5e-63 246.1 196 66.3
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 7.7e-63 245.4 257 54.5
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.5e-62 241.9 272 51.5
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.5e-62 241.9 269 51.7
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 8.5e-62 241.9 279 49.1
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 4.7e-60 236.1 184 65.2
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 2.6e-58 230.3 379 43.5
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.7e-58 229.2 304 44.1
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 3.7e-57 226.5 245 55.5
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 1.6e-55 221.1 216 57.4
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 4.5e-55 219.5 312 45.8
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 2.1e-52 210.7 177 64.4
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 4.0e-51 206.5 204 52.0
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 2.2e-49 200.7 148 70.3
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.1e-48 198.4 148 69.6
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 9.2e-48 195.3 197 57.9
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 2.7e-47 193.7 202 52.0
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.0e-46 191.8 211 47.9
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.0e-46 191.8 155 65.8
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.1e-45 188.3 169 63.9
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 4.4e-42 176.4 120 70.8
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 2.2e-41 174.1 312 38.5
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 1.7e-38 164.5 105 76.2
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.3e-35 154.1 210 46.2
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 5.2e-35 152.9 95 72.6
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 4.4e-34 149.8 311 36.3
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 1.1e-29 135.2 148 48.6
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 5.4e-24 116.3 80 71.2
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 3.9e-22 110.2 76 72.4
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 3.9e-22 110.2 73 75.3
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 3.9e-22 110.2 101 52.5
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 5.6e-21 106.3 77 68.8
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 5.6e-21 106.3 80 66.2
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 6.8e-19 99.4 82 62.2
CAN.G1034.2 Capsicum annuum HOM05D000222 ORTHO05D011077 9.2e-16 89.0 193 37.3
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 1.6e-15 88.2 300 28.3
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 2.1e-15 87.8 61 68.9
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 1.1e-13 82.0 52 76.9
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 5.6e-13 79.7 56 67.9
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.6e-12 78.2 53 71.7
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 2.8e-12 77.4 146 37.0
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 6.2e-12 76.3 125 43.2
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 1.1e-11 75.5 330 25.5
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 2.6e-10 70.9 128 37.5
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.2e-08 63.9 225 28.4
CAN.G523.5 Capsicum annuum HOM05D000222 ORTHO05D012343 4.2e-08 63.5 63 55.6
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 1.0e-06 58.9 66 50.0
SEGI_40538 Sequoiadendron giganteum HOM05D003810 ORTHO05D004416 3.9e-06 57.0 51 56.9


User provided reference genes

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