Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 1.8e-91 339.3 183 100.0
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 6.6e-62 241.1 186 72.0
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 3.1e-59 232.3 192 70.3
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 9.9e-58 227.3 191 71.7
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 9.9e-58 227.3 194 70.1
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.7e-57 226.5 194 70.6
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.7e-57 226.5 194 70.6
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.7e-57 226.5 186 68.8
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 3.7e-57 225.3 191 69.6
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 1.1e-56 223.8 187 71.1
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 1.9e-56 223.0 186 68.8
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 5.4e-56 221.5 191 69.6
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.1e-55 219.5 191 68.6
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 6.0e-55 218.0 191 71.7
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 6.0e-55 218.0 194 67.5
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.0e-54 217.2 187 69.0
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 1.7e-54 216.5 197 67.0
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.3e-54 216.1 193 68.4
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 3.0e-54 215.7 196 67.3
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 5.1e-54 214.9 194 68.0
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 5.1e-54 214.9 190 68.9
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 6.6e-54 214.5 190 65.8
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 8.6e-54 214.2 194 67.0
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 8.6e-54 214.2 192 68.2
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 1.1e-53 213.8 192 66.1
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.5e-53 213.4 194 63.4
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 1.5e-53 213.4 191 68.1
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 1.9e-53 213.0 191 67.0
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.9e-53 213.0 190 68.4
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 2.5e-53 212.6 192 68.2
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.3e-53 212.2 190 67.9
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 3.3e-53 212.2 194 68.0
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 5.6e-53 211.5 196 67.3
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 5.6e-53 211.5 192 67.7
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 1.6e-52 209.9 196 66.8
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 2.1e-52 209.5 190 66.3
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 1.4e-51 206.8 186 67.2
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 3.1e-51 205.7 186 66.1
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.2e-51 204.9 186 66.1
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 5.2e-51 204.9 191 63.9
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 6.8e-51 204.5 190 64.7
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 6.8e-51 204.5 192 62.5
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.8e-51 204.5 192 62.5
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 6.8e-51 204.5 192 62.5
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 6.8e-51 204.5 192 64.6
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.2e-50 203.8 191 66.5
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.5e-50 203.4 174 69.5
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 2.6e-50 202.6 191 66.0
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 3.4e-50 202.2 190 65.8
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 3.4e-50 202.2 190 64.2
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 4.4e-50 201.8 190 64.2
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 9.9e-50 200.7 190 63.2
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 9.9e-50 200.7 189 63.5
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 1.3e-49 200.3 195 64.6
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 1.3e-49 200.3 185 65.4
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 1.3e-49 200.3 191 66.0
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 1.3e-49 200.3 186 65.6
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 1.3e-49 200.3 190 64.7
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.7e-49 199.9 187 64.7
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 3.8e-49 198.7 192 64.6
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 3.8e-49 198.7 184 63.6
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 4.9e-49 198.4 198 63.6
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 4.9e-49 198.4 206 59.7
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 4.9e-49 198.4 184 63.6
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 4.9e-49 198.4 184 65.2
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 6.4e-49 198.0 185 64.9
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 8.4e-49 197.6 187 64.2
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 1.1e-48 197.2 190 63.2
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 1.4e-48 196.8 182 65.4
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.4e-48 196.8 181 66.3
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 1.9e-48 196.4 189 65.1
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 2.4e-48 196.1 171 68.4
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 5.4e-48 194.9 163 70.6
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 9.2e-48 194.1 231 55.0
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 1.2e-47 193.7 191 62.8
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 2.1e-47 193.0 185 64.9
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 2.7e-47 192.6 186 64.0
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 2.7e-47 192.6 186 61.3
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 6.0e-47 191.4 143 76.9
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 7.8e-47 191.0 194 61.3
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 7.8e-47 191.0 175 66.3
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 2.3e-46 189.5 218 56.4
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 3.0e-46 189.1 194 61.9
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 5.1e-46 188.3 186 60.8
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 5.1e-46 188.3 191 61.3
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 6.6e-46 188.0 192 62.5
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 6.6e-46 188.0 192 62.5
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 6.6e-46 188.0 191 63.4
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 6.6e-46 188.0 191 63.9
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 6.6e-46 188.0 187 63.1
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 6.6e-46 188.0 192 59.9
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 1.5e-45 186.8 204 56.9
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 1.9e-45 186.4 191 62.3
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 1.9e-45 186.4 191 62.8
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 1.9e-45 186.4 191 62.8
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 1.9e-45 186.4 191 62.8
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 2.5e-45 186.0 181 58.6
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 4.3e-45 185.3 191 62.3
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 4.3e-45 185.3 186 61.8
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 5.6e-45 184.9 187 60.4
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 7.3e-45 184.5 192 60.9
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 7.3e-45 184.5 189 61.9
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 9.6e-45 184.1 191 62.3
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 9.6e-45 184.1 191 61.3
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 1.6e-44 183.3 195 60.5
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 2.1e-44 183.0 142 73.2
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 2.8e-44 182.6 197 58.4
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 3.6e-44 182.2 193 61.7
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 3.6e-44 182.2 191 61.8
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 6.2e-44 181.4 192 62.0
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 1.4e-43 180.3 178 61.2
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 1.4e-43 180.3 144 72.2
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 4.0e-43 178.7 143 72.0
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 4.0e-43 178.7 143 72.0
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 6.9e-43 177.9 143 72.7
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.5e-42 176.8 126 77.0
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 2.0e-42 176.4 218 53.2
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 3.4e-42 175.6 125 77.6
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 4.4e-42 175.3 125 78.4
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 2.9e-41 172.6 127 74.8
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.4e-40 170.2 149 67.8
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 1.9e-40 169.9 177 61.0
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 1.9e-40 169.9 144 69.4
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 3.2e-40 169.1 174 58.6
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 4.2e-40 168.7 133 71.4
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 2.7e-39 166.0 186 56.5
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.3e-38 162.9 145 64.1
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 3.9e-38 162.2 191 57.6
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 8.7e-38 161.0 137 67.9
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.1e-37 160.6 124 71.8
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 1.5e-37 160.2 124 69.4
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 1.6e-36 156.8 190 54.2
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 2.1e-36 156.4 149 63.1
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 4.8e-36 155.2 184 52.2
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 6.2e-36 154.8 149 61.7
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 8.1e-36 154.5 149 61.7
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 1.1e-35 154.1 190 52.6
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.8e-35 153.3 189 53.4
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 2.4e-35 152.9 163 56.4
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 5.3e-35 151.8 184 51.1
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 7.6e-34 147.9 140 60.0
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 9.9e-34 147.5 140 60.0
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.7e-33 146.7 95 81.1
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 4.6e-31 138.7 85 82.4
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 6.7e-30 134.8 123 61.0
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.5e-29 132.9 138 58.0
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.3e-28 130.6 197 47.2
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 1.3e-28 130.6 136 53.7
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 1.4e-27 127.1 165 49.1
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 6.9e-27 124.8 150 52.7
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 9.0e-27 124.4 148 51.4
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 2.0e-26 123.2 166 49.4
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 5.8e-26 121.7 166 45.8
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 5.8e-26 121.7 114 59.6
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 7.6e-26 121.3 122 54.1
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 9.9e-26 120.9 125 51.2
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.7e-25 120.2 94 64.9
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 3.8e-25 119.0 123 56.1
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 8.4e-25 117.9 159 45.3
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 1.4e-24 117.1 149 46.3
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 6.7e-22 108.2 92 57.6
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 2.0e-18 96.7 60 78.3
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.4e-18 95.9 57 80.7
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 1.7e-17 93.6 75 64.0
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 1.7e-17 93.6 56 82.1
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 3.8e-17 92.4 56 80.4
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 3.5e-15 85.9 117 47.9
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 6.0e-15 85.1 117 47.9
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.5e-13 80.5 69 68.1
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 4.5e-10 68.9 68 63.2
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.7e-09 67.0 68 61.8
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 3.8e-09 65.9 61 62.3
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 9.4e-08 61.2 124 35.5
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 2.1e-07 60.1 45 71.1
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 6.1e-07 58.5 68 44.1
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 7.9e-07 58.2 65 44.6
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 3.0e-06 56.2 31 83.9
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 8.8e-06 54.7 65 43.1


User provided reference genes

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