Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A821T48 Lonicera japonica HOM05D001752 ORTHO05D013127 9.8e-71 270.0 135 100.0
Cc05_g10510 Coffea canephora HOM05D001752 ORTHO05D005237 1.7e-27 126.3 127 57.5
Dinv13346 Davidia involucrata HOM05D001752 ORTHO05D005237 3.0e-27 125.6 123 61.0
Cpa.g.sc1272.2 Carica papaya HOM05D001752 ORTHO05D005237 3.9e-27 125.2 134 53.7
Dinv26692 Davidia involucrata HOM05D001752 ORTHO05D005237 9.6e-26 120.6 127 58.3
SalBow7G0098 Salvia bowleyana HOM05D001752 ORTHO05D005237 1.3e-25 120.2 127 55.9
SalBow7G0347 Salvia bowleyana HOM05D001752 ORTHO05D005237 1.3e-25 120.2 127 55.9
GSVIVG01014066001 Vitis vinifera HOM05D001752 ORTHO05D005237 1.3e-25 120.2 109 61.5
Actinidia07515 Actinidia chinensis HOM05D001752 ORTHO05D005237 1.6e-25 119.8 127 56.7
Migut.H02035 Erythranthe guttata HOM05D001752 ORTHO05D005237 1.6e-25 119.8 110 58.2
Sabra16G0250700 Salix brachista HOM05D001752 ORTHO05D005237 2.8e-25 119.0 109 60.6
Actinidia12617 Actinidia chinensis HOM05D001752 ORTHO05D005237 8.1e-25 117.5 127 56.7
MSTRG.14259 Avicennia marina HOM05D001752 ORTHO05D005237 1.4e-24 116.7 127 54.3
CiPaw.12G046600 Carya illinoinensis HOM05D001752 ORTHO05D005237 1.4e-24 116.7 122 57.4
Rhsim06G0187500 Rhododendron simsii HOM05D001752 ORTHO05D005237 1.8e-24 116.3 128 55.5
CSS0031554 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 3.1e-24 115.5 109 58.7
Gohir.D13G155500 Gossypium hirsutum HOM05D001752 ORTHO05D005237 6.9e-24 114.4 109 59.6
Gorai.013G176100 Gossypium raimondii HOM05D001752 ORTHO05D005237 6.9e-24 114.4 109 59.6
COL.COLO4_17445 Corchorus olitorius HOM05D001752 ORTHO05D005237 2.0e-23 112.8 121 54.5
QL08p027904 Quercus lobata HOM05D001752 ORTHO05D005237 2.0e-23 112.8 110 58.2
Ciclev10020312m.g Citrus clementina HOM05D001752 ORTHO05D005237 2.6e-23 112.5 109 56.9
RcHm_v2.0_Chr5g0028851 Rosa chinensis HOM05D001752 ORTHO05D005237 3.4e-23 112.1 125 54.4
Cfa019489 Carpinus fangiana HOM05D001752 ORTHO05D005237 4.5e-23 111.7 110 57.3
MELO3C016140.2 Cucumis melo HOM05D001752 ORTHO05D005237 5.8e-23 111.3 109 55.0
Gohir.A13G151300 Gossypium hirsutum HOM05D001752 ORTHO05D005237 5.8e-23 111.3 109 57.8
Lj8A144T69 Lonicera japonica HOM05D001752 ORTHO05D005237 5.8e-23 111.3 122 54.9
MSTRG.14994 Avicennia marina HOM05D001752 ORTHO05D005237 7.6e-23 110.9 123 52.8
CSS0035593 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 1.3e-22 110.2 119 57.1
SGA_v2.0_scaffold4G02146 Striga asiatica HOM05D001752 ORTHO05D005237 1.3e-22 110.2 135 51.1
CARHR017580 Cardamine hirsuta HOM05D001752 ORTHO05D005237 2.9e-22 109.0 130 48.5
Hma1.2p1_0713F.1_g207770 Hydrangea macrophylla HOM05D001752 ORTHO05D005237 2.9e-22 109.0 121 55.4
Potri.001G380500 Populus trichocarpa HOM05D001752 ORTHO05D005237 2.9e-22 109.0 110 59.1
MD11G1273800 Malus domestica HOM05D001752 ORTHO05D005237 4.9e-22 108.2 115 53.9
Hund10378 Selenicereus undatus HOM05D001752 ORTHO05D005237 4.9e-22 108.2 102 56.9
CsaV3_4G007960 Cucumis sativus L. HOM05D001752 ORTHO05D005237 6.4e-22 107.8 109 53.2
Duzib187G0679 Durio zibethinus HOM05D001752 ORTHO05D005237 8.4e-22 107.5 109 56.9
Lj1A821G46 Lonicera japonica HOM05D001752 ORTHO05D005237 1.1e-21 107.1 117 56.4
Thhalv10007715m.g Eutrema salsugineum HOM05D001752 ORTHO05D005237 1.4e-21 106.7 130 47.7
Manes.15G100400 Manihot esculenta HOM05D001752 ORTHO05D005237 3.2e-21 105.5 109 55.0
Sc03g0010800 Simmondsia chinensis HOM05D001752 ORTHO05D005237 3.2e-21 105.5 118 54.2
FAN25G2993 Fragaria x ananassa HOM05D001752 ORTHO05D005237 4.2e-21 105.1 123 54.5
CARHR072000 Cardamine hirsuta HOM05D001752 ORTHO05D005237 5.4e-21 104.8 149 44.3
TAR627G1108 Trochodendron aralioides HOM05D001752 ORTHO05D005237 5.4e-21 104.8 126 50.8
Prupe.4G153300 Prunus persica HOM05D001752 ORTHO05D005237 7.1e-21 104.4 118 53.4
Sp1g15170 Schrenkiella parvula HOM05D001752 ORTHO05D005237 7.1e-21 104.4 130 46.9
Carub.0001s1677 Capsella rubella HOM05D001752 ORTHO05D005237 1.2e-20 103.6 111 54.1
Eucgr.F03219 Eucalyptus grandis HOM05D001752 ORTHO05D005237 1.2e-20 103.6 109 54.1
FvH4_3g17330 Fragaria vesca HOM05D001752 ORTHO05D005237 1.2e-20 103.6 102 59.8
FAN11G0153 Fragaria x ananassa HOM05D001752 ORTHO05D005237 1.2e-20 103.6 102 59.8
FAN16G0271 Fragaria x ananassa HOM05D001752 ORTHO05D005237 1.2e-20 103.6 102 59.8
Nitab4.5_0007036g0010 Nicotiana tabacum HOM05D001752 ORTHO05D005237 2.1e-20 102.8 132 46.2
Sed0013121 Sechium edule HOM05D001752 ORTHO05D005237 2.1e-20 102.8 109 52.3
TWI39G0829 Tripterygium wilfordii HOM05D001752 ORTHO05D005237 2.1e-20 102.8 103 56.3
CANSAT56G3507 Cannabis sativa HOM05D001752 ORTHO05D005237 2.7e-20 102.4 127 50.4
THA.LOC104812299 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 2.7e-20 102.4 117 52.1
TAR629G1663 Trochodendron aralioides HOM05D001752 ORTHO05D005237 2.7e-20 102.4 105 58.1
AT1G17050 Arabidopsis thaliana HOM05D001752 ORTHO05D005237 3.5e-20 102.1 109 52.3
Oeu025324.1 Olea europaea HOM05D001752 ORTHO05D005237 3.5e-20 102.1 88 63.6
Sed0021402 Sechium edule HOM05D001752 ORTHO05D005237 3.5e-20 102.1 109 51.4
CSS0015991 Camellia sinensis var. sinensis HOM05D001752 ORTHO05D005237 4.6e-20 101.7 119 54.6
AUR62039570 Chenopodium quinoa HOM05D001752 ORTHO05D005237 4.6e-20 101.7 104 53.8
ECA234G2248 Erigeron canadensis HOM05D001752 ORTHO05D005237 4.6e-20 101.7 121 51.2
BcaC08g47421 Brassica carinata HOM05D001752 ORTHO05D005237 6.0e-20 101.3 125 48.0
BolC6t40261H Brassica oleracea HOM05D001752 ORTHO05D005237 6.0e-20 101.3 125 48.0
Sp5g33600 Schrenkiella parvula HOM05D001752 ORTHO05D005237 7.9e-20 100.9 109 52.3
THA.LOC104813987 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 7.9e-20 100.9 116 50.9
BcaC05g25678 Brassica carinata HOM05D001752 ORTHO05D005237 1.0e-19 100.5 109 51.4
C05p15370 Brassica napus HOM05D001752 ORTHO05D005237 1.0e-19 100.5 109 52.3
BolC5t30243H Brassica oleracea HOM05D001752 ORTHO05D005237 1.0e-19 100.5 109 51.4
BraA06t24454Z Brassica rapa HOM05D001752 ORTHO05D005237 1.0e-19 100.5 109 52.3
MSTRG.6698 Avicennia marina HOM05D001752 ORTHO05D005237 1.8e-19 99.8 108 52.8
MD03G1252200 Malus domestica HOM05D001752 ORTHO05D005237 1.8e-19 99.8 88 61.4
Aa31LG7G1880 Aethionema arabicum HOM05D001752 ORTHO05D005237 2.3e-19 99.4 109 51.4
A06p12950 Brassica napus HOM05D001752 ORTHO05D005237 2.3e-19 99.4 109 51.4
Solyc07g061990.3 Solanum lycopersicum HOM05D001752 ORTHO05D005237 2.3e-19 99.4 142 45.8
Sopen07g030260 Solanum pennellii HOM05D001752 ORTHO05D005237 2.3e-19 99.4 142 45.8
HanXRQChr12g0373361 Helianthus annuus HOM05D001752 ORTHO05D005237 3.0e-19 99.0 106 53.8
Peaxi162Scf00111g01144 Petunia axillaris HOM05D001752 ORTHO05D005237 3.0e-19 99.0 102 55.9
Thecc.07G140500 Theobroma cacao HOM05D001752 ORTHO05D005237 3.0e-19 99.0 88 61.4
Nn4g26511 Nelumbo nucifera HOM05D001752 ORTHO05D005237 3.9e-19 98.6 109 55.0
BcaB02g06681 Brassica carinata HOM05D001752 ORTHO05D005237 5.1e-19 98.2 109 50.5
Thhalv10018616m.g Eutrema salsugineum HOM05D001752 ORTHO05D005237 5.1e-19 98.2 115 50.4
Ca_03415_v3 Cicer arietinum L. HOM05D001752 ORTHO05D005237 6.7e-19 97.8 130 47.7
Ca_29740_v3 Cicer arietinum L. HOM05D001752 ORTHO05D005237 6.7e-19 97.8 130 47.7
AL7G51010 Arabidopsis lyrata HOM05D001752 ORTHO05D005237 8.7e-19 97.4 73 67.1
arahy.Tifrunner.gnm1.ann1.1MPM44 Arachis hypogaea HOM05D001752 ORTHO05D005237 1.1e-18 97.1 107 55.1
A07p43780 Brassica napus HOM05D001752 ORTHO05D005237 1.1e-18 97.1 74 66.2
C06p52420 Brassica napus HOM05D001752 ORTHO05D005237 1.1e-18 97.1 74 66.2
BraA07t31886Z Brassica rapa HOM05D001752 ORTHO05D005237 1.1e-18 97.1 74 66.2
Migut.M00682 Erythranthe guttata HOM05D001752 ORTHO05D005237 1.9e-18 96.3 88 58.0
Lalb_Chr01g0016221 Lupinus albus HOM05D001752 ORTHO05D005237 1.9e-18 96.3 120 52.5
arahy.Tifrunner.gnm1.ann1.XQ2AST Arachis hypogaea HOM05D001752 ORTHO05D005237 2.5e-18 95.9 107 54.2
Carub.0002s2536 Capsella rubella HOM05D001752 ORTHO05D005237 3.3e-18 95.5 73 67.1
Lalb_Chr20g0109041 Lupinus albus HOM05D001752 ORTHO05D005237 3.3e-18 95.5 108 52.8
Phvul.005G064200 Phaseolus vulgaris HOM05D001752 ORTHO05D005237 3.3e-18 95.5 110 51.8
TAR624G0293 Trochodendron aralioides HOM05D001752 ORTHO05D013127 4.3e-18 95.1 69 71.0
Haze_08466 Corylus avellana HOM05D001752 ORTHO05D005237 5.6e-18 94.7 151 44.4
Potri.011G101200 Populus trichocarpa HOM05D001752 ORTHO05D005237 5.6e-18 94.7 107 53.3
unitig_46.g18306 Utricularia gibba HOM05D001752 ORTHO05D005237 5.6e-18 94.7 109 51.4
PSO541G0989 Papaver somniferum HOM05D001752 ORTHO05D005237 7.4e-18 94.4 102 54.9
TPR.G6839 Trifolium pratense HOM05D001752 ORTHO05D005237 7.4e-18 94.4 91 59.3
AL2G38910 Arabidopsis lyrata HOM05D001752 ORTHO05D005237 9.6e-18 94.0 73 64.4
AT1G78510 Arabidopsis thaliana HOM05D001752 ORTHO05D005237 9.6e-18 94.0 73 65.8
EL10Ac4g08456 Beta vulgaris HOM05D001752 ORTHO05D005237 9.6e-18 94.0 81 60.5
Lj3g0019503 Lotus japonicus HOM05D001752 ORTHO05D005237 9.6e-18 94.0 112 50.9
Potri.011G101301 Populus trichocarpa HOM05D001752 ORTHO05D005237 9.6e-18 94.0 107 53.3
PGR031G0641 Punica granatum HOM05D001752 ORTHO05D005237 9.6e-18 94.0 72 66.7
CAN.G375.68 Capsicum annuum HOM05D001752 ORTHO05D005237 1.3e-17 93.6 132 45.5
Glyma.13G262200 Glycine max HOM05D001752 ORTHO05D005237 1.3e-17 93.6 127 48.0
SGA_v2.0_scaffold130G34245 Striga asiatica HOM05D001752 ORTHO05D005237 1.3e-17 93.6 93 58.1
DCAR_017581 Daucus carota HOM05D001752 ORTHO05D005237 1.6e-17 93.2 80 62.5
Psat1g006600 Pisum sativum HOM05D001752 ORTHO05D005237 1.6e-17 93.2 108 51.9
PGSC0003DMG400007081 Solanum tuberosum HOM05D001752 ORTHO05D005237 1.6e-17 93.2 71 64.8
HanXRQChr10g0305631 Helianthus annuus HOM05D001752 ORTHO05D005237 2.1e-17 92.8 108 54.6
Medtr2g072470 Medicago truncatula HOM05D001752 ORTHO05D005237 2.1e-17 92.8 112 49.1
THA.LOC104822586 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 3.6e-17 92.0 70 65.7
Glyma.15G243100 Glycine max HOM05D001752 ORTHO05D005237 8.1e-17 90.9 111 49.5
vmacro11993 Vaccinium macrocarpon HOM05D001752 ORTHO05D005237 8.1e-17 90.9 112 50.9
ClCG07G010380 Citrullus lanatus HOM05D001752 ORTHO05D005237 1.1e-16 90.5 82 58.5
CDE02G0912 Ceratophyllum demersum HOM05D001752 ORTHO05D005237 3.1e-16 89.0 110 45.5
Nn3g20662 Nelumbo nucifera HOM05D001752 ORTHO05D005237 3.1e-16 89.0 103 52.4
SEGI_06571 Sequoiadendron giganteum HOM05D001752 ORTHO05D005237 3.1e-16 89.0 71 62.0
AUR62019685 Chenopodium quinoa HOM05D001752 ORTHO05D005237 5.3e-16 88.2 116 46.6
Aqoxy1G01776 Aquilegia oxysepala HOM05D001752 ORTHO05D005237 6.9e-16 87.8 83 55.4
PSO675G8508 Papaver somniferum HOM05D001752 ORTHO05D005237 6.9e-16 87.8 93 54.8
CDE09G0513 Ceratophyllum demersum HOM05D001752 ORTHO05D005237 9.0e-16 87.4 81 54.3
THA.LOC104810419 Tarenaya hassleriana HOM05D001752 ORTHO05D005237 9.0e-16 87.4 73 58.9
VMungo1080G1543 Vigna mungo HOM05D001752 ORTHO05D005237 9.0e-16 87.4 114 47.4
unitig_37.g12550 Utricularia gibba HOM05D001752 ORTHO05D005237 1.5e-15 86.7 84 58.3
Potri.011G099500 Populus trichocarpa HOM05D001752 ORTHO05D005237 2.0e-15 86.3 90 54.4
Os12g0271700 Oryza sativa ssp. japonica HOM05D001752 ORTHO05D005237 4.5e-15 85.1 64 67.2
Os05g0582300 Oryza sativa ssp. japonica HOM05D001752 ORTHO05D005237 9.9e-15 84.0 64 65.6
Zm00001eb004050 Zea mays HOM05D001752 ORTHO05D005237 3.8e-14 82.0 67 61.2
Mapoly0058s0036 Marchantia polymorpha HOM05D001752 ORTHO05D005237 6.4e-14 81.3 69 53.6
Pp3c16_16550 Physcomitrium patens HOM05D001752 ORTHO05D005237 8.4e-14 80.9 93 47.3
MBI10_g03528_MAGBIO Magnolia biondii HOM05D001752 ORTHO05D005237 1.4e-13 80.1 67 62.7
BcaC09g49151 Brassica carinata HOM05D001852 ORTHO05D013127 1.9e-13 79.7 70 58.6
BolC1t04168H Brassica oleracea HOM05D001852 ORTHO05D013127 1.9e-13 79.7 70 58.6
Oeu050685.1 Olea europaea HOM05D001752 ORTHO05D005237 3.2e-13 79.0 175 38.3
Zm00001eb297120 Zea mays HOM05D001752 ORTHO05D005237 5.5e-13 78.2 62 62.9
ATR1153G023 Amborella trichopoda HOM05D001752 ORTHO05D005237 7.1e-13 77.8 70 55.7
BolC4t24645H Brassica oleracea HOM05D001852 ORTHO05D013127 1.2e-12 77.0 70 55.7
HPP92_010049 Vanilla planifolia HOM05D001752 ORTHO05D005237 2.1e-12 76.3 66 54.5
SMO201G0139 Selaginella moellendorffii HOM05D001752 ORTHO05D005237 4.6e-12 75.1 100 44.0
C04p31080 Brassica napus HOM05D001852 ORTHO05D013127 7.9e-12 74.3 100 45.0
BcaC02g10252 Brassica carinata HOM05D001852 ORTHO05D013127 2.3e-11 72.8 70 54.3
Pp3c27_1880 Physcomitrium patens HOM05D001752 ORTHO05D005237 2.3e-11 72.8 80 46.2
C07p22800 Brassica napus HOM05D001852 ORTHO05D013127 1.5e-10 70.1 68 54.4
Phvul.002G108500 Phaseolus vulgaris HOM05D001752 ORTHO05D013127 5.6e-10 68.2 83 50.6
AagrBONN_evm.TU.Sc2ySwM_228.153 Anthoceros agrestis HOM05D001752 ORTHO05D005237 6.9e-08 61.2 83 39.8
MCO05G629 Micromonas commoda HOM05D001752 ORTHO05D005237 6.9e-08 61.2 70 42.9
AL1G29220 Arabidopsis lyrata HOM05D005685 ORTHO05D007046 1.5e-07 60.1 43 67.4
Cre13.g565650 Chlamydomonas reinhardtii HOM05D001752 ORTHO05D005237 5.8e-07 58.2 62 41.9
DCAR_019630 Daucus carota HOM05D001752 ORTHO05D005237 1.7e-06 56.6 39 71.8


User provided reference genes

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