Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A579T48 Lonicera japonica HOM05D004200 ORTHO05D004996 4.0e-33 144.1 67 100.0
Actinidia03266 Actinidia chinensis HOM05D004200 ORTHO05D004996 7.1e-22 106.7 49 100.0
CSS0000339 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 7.1e-22 106.7 49 100.0
Hma1.2p1_0220F.1_g092980 Hydrangea macrophylla HOM05D004200 ORTHO05D004996 7.1e-22 106.7 49 100.0
Lsat_1_v5_gn_0_14781 Lactuca sativa HOM05D004200 ORTHO05D004996 7.1e-22 106.7 49 100.0
Nn1g09712 Nelumbo nucifera HOM05D004200 ORTHO05D004996 7.1e-22 106.7 49 100.0
TAR362G0304 Trochodendron aralioides HOM05D004200 ORTHO05D004996 7.1e-22 106.7 49 100.0
vmacro10414 Vaccinium macrocarpon HOM05D004200 ORTHO05D004996 7.1e-22 106.7 49 100.0
GSVIVG01019063001 Vitis vinifera HOM05D004200 ORTHO05D004996 7.1e-22 106.7 49 100.0
CSS0002176 Camellia sinensis var. sinensis HOM05D004200 ORTHO05D004996 1.2e-21 105.9 49 98.0
PGR119G0338 Punica granatum HOM05D004200 ORTHO05D004996 1.2e-21 105.9 49 98.0
arahy.Tifrunner.gnm1.ann1.26W00C Arachis hypogaea HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
arahy.Tifrunner.gnm1.ann1.28W6CD Arachis hypogaea HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
Cfa006248 Carpinus fangiana HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
CiPaw.07G082000 Carya illinoinensis HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
CDE04G0807 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
CDE07G0335 Ceratophyllum demersum HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
Ca_08002_v3 Cicer arietinum L. HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
Haze_04586 Corylus avellana HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
Glyma.09G248800 Glycine max HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
Glyma.18G243900 Glycine max HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
Lj1g0022981 Lotus japonicus HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
Lalb_Chr03g0038051 Lupinus albus HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
MBI11_g10486_MAGBIO Magnolia biondii HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
Medtr7g080320 Medicago truncatula HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
PSO210G5049 Papaver somniferum HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
Phvul.008G052700 Phaseolus vulgaris HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
Psat3g102400 Pisum sativum HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
QL01p048231 Quercus lobata HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
TPR.G33888 Trifolium pratense HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
VMungo0464G1072 Vigna mungo HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
VMungo1383G0269 Vigna mungo HOM05D004200 ORTHO05D004996 1.6e-21 105.5 49 98.0
Nn7g37558 Nelumbo nucifera HOM05D004200 ORTHO05D004996 2.1e-21 105.1 49 98.0
DCAR_030003 Daucus carota HOM05D004200 ORTHO05D004996 2.7e-21 104.8 49 95.9
Eucgr.B01428 Eucalyptus grandis HOM05D004200 ORTHO05D004996 2.7e-21 104.8 49 95.9
Rhsim09G0129000 Rhododendron simsii HOM05D004200 ORTHO05D004996 2.7e-21 104.8 49 95.9
Aqoxy2G04143 Aquilegia oxysepala HOM05D004200 ORTHO05D004996 3.5e-21 104.4 64 76.6
ECA232G1350 Erigeron canadensis HOM05D004200 ORTHO05D004996 3.5e-21 104.4 49 98.0
HanXRQChr04g0101101 Helianthus annuus HOM05D004200 ORTHO05D004996 3.5e-21 104.4 49 98.0
HanXRQChr15g0492211 Helianthus annuus HOM05D004200 ORTHO05D004996 3.5e-21 104.4 49 98.0
Potri.013G084800 Populus trichocarpa HOM05D004200 ORTHO05D004996 3.5e-21 104.4 49 95.9
Potri.019G055000 Populus trichocarpa HOM05D004200 ORTHO05D004996 3.5e-21 104.4 49 95.9
Sabra13G0078600 Salix brachista HOM05D004200 ORTHO05D004996 3.5e-21 104.4 49 95.9
Sabra19G0064000 Salix brachista HOM05D004200 ORTHO05D004996 3.5e-21 104.4 49 95.9
Hund07362 Selenicereus undatus HOM05D004200 ORTHO05D004996 3.5e-21 104.4 49 98.0
TAR633G1708 Trochodendron aralioides HOM05D004200 ORTHO05D004996 3.5e-21 104.4 49 98.0
Atru.chr12.1727 Acer truncatum HOM05D004200 ORTHO05D004996 4.6e-21 104.0 49 95.9
Lalb_Chr01g0020591 Lupinus albus HOM05D004200 ORTHO05D004996 4.6e-21 104.0 49 95.9
ATR0743G001 Amborella trichopoda HOM05D004200 ORTHO05D004996 6.0e-21 103.6 49 95.9
Manes.12G003500 Manihot esculenta HOM05D004200 ORTHO05D004996 6.0e-21 103.6 49 93.9
Manes.13G003600 Manihot esculenta HOM05D004200 ORTHO05D004996 6.0e-21 103.6 49 93.9
PSO675G0506 Papaver somniferum HOM05D004200 ORTHO05D004996 6.0e-21 103.6 49 95.9
COL.COLO4_08422 Corchorus olitorius HOM05D004200 ORTHO05D004996 7.9e-21 103.2 49 95.9
Dinv00535 Davidia involucrata HOM05D004200 ORTHO05D004996 7.9e-21 103.2 49 98.0
Duzib235G1318 Durio zibethinus HOM05D004200 ORTHO05D004996 7.9e-21 103.2 49 95.9
Gohir.A02G105800 Gossypium hirsutum HOM05D004200 ORTHO05D004996 7.9e-21 103.2 49 95.9
Gohir.D03G078000 Gossypium hirsutum HOM05D004200 ORTHO05D004996 7.9e-21 103.2 49 95.9
Gorai.003G086100 Gossypium raimondii HOM05D004200 ORTHO05D004996 7.9e-21 103.2 49 95.9
Thecc.05G189300 Theobroma cacao HOM05D004200 ORTHO05D004996 7.9e-21 103.2 49 95.9
EL10Ac4g10002 Beta vulgaris HOM05D004200 ORTHO05D004996 1.0e-20 102.8 49 95.9
Ciclev10012249m.g Citrus clementina HOM05D004200 ORTHO05D004996 1.0e-20 102.8 49 93.9
PSO832G1195 Papaver somniferum HOM05D004200 ORTHO05D004996 1.0e-20 102.8 49 95.9
TWI36G1378 Tripterygium wilfordii HOM05D004200 ORTHO05D004996 1.0e-20 102.8 49 93.9
Cc09_g03900 Coffea canephora HOM05D004200 ORTHO05D004996 1.3e-20 102.4 49 95.9
FvH4_6g00250 Fragaria vesca HOM05D004200 ORTHO05D004996 1.3e-20 102.4 49 93.9
FAN02G3263 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.3e-20 102.4 49 93.9
FAN05G5080 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.3e-20 102.4 49 93.9
FAN09G2946 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.3e-20 102.4 49 93.9
FAN14G5194 Fragaria x ananassa HOM05D004200 ORTHO05D004996 1.3e-20 102.4 49 93.9
MD04G1246800 Malus domestica HOM05D004200 ORTHO05D004996 1.3e-20 102.4 49 93.9
MD12G1263400 Malus domestica HOM05D004200 ORTHO05D004996 1.3e-20 102.4 49 93.9
RcHm_v2.0_Chr3g0447621 Rosa chinensis HOM05D004200 ORTHO05D004996 1.3e-20 102.4 49 93.9
Aa31LG5G13880 Aethionema arabicum HOM05D004200 ORTHO05D004996 1.8e-20 102.1 49 93.9
Cpa.g.sc123.38 Carica papaya HOM05D004200 ORTHO05D004996 1.8e-20 102.1 49 93.9
SEGI_05832 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 1.8e-20 102.1 49 91.8
Nitab4.5_0000080g0180 Nicotiana tabacum HOM05D004200 ORTHO05D004996 2.3e-20 101.7 49 93.9
Nitab4.5_0004652g0020 Nicotiana tabacum HOM05D004200 ORTHO05D004996 2.3e-20 101.7 49 93.9
Migut.F01862 Erythranthe guttata HOM05D004200 ORTHO05D004996 3.0e-20 101.3 64 73.4
Os03g0843500 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 3.9e-20 100.9 49 91.8
Prupe.6G363000 Prunus persica HOM05D004200 ORTHO05D004996 3.9e-20 100.9 49 91.8
THA.LOC104820847 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 3.9e-20 100.9 49 91.8
AL3G12970 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 5.1e-20 100.5 49 91.8
AT3G03340 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 5.1e-20 100.5 49 91.8
CANSAT54G2186 Cannabis sativa HOM05D004200 ORTHO05D004996 5.1e-20 100.5 49 91.8
Carub.0003s0251 Capsella rubella HOM05D004200 ORTHO05D004996 5.1e-20 100.5 49 91.8
CARHR077380 Cardamine hirsuta HOM05D004200 ORTHO05D004996 5.1e-20 100.5 49 91.8
AUR62000293 Chenopodium quinoa HOM05D004200 ORTHO05D004996 5.1e-20 100.5 49 93.9
AUR62006639 Chenopodium quinoa HOM05D004200 ORTHO05D004996 5.1e-20 100.5 49 93.9
Sed0018905 Sechium edule HOM05D004200 ORTHO05D004996 5.1e-20 100.5 49 91.8
Hund21914 Selenicereus undatus HOM05D004200 ORTHO05D004996 6.7e-20 100.1 49 93.9
AT5G17440 Arabidopsis thaliana HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
BcaB08g36770 Brassica carinata HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
BcaC03g13520 Brassica carinata HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
BcaC04g18792 Brassica carinata HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
A02p04200 Brassica napus HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
A10p21960 Brassica napus HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
C02p09080 Brassica napus HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
C09p59710 Brassica napus HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
BolC2t06818H Brassica oleracea HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
BolC9t58809H Brassica oleracea HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
BraA02t05383Z Brassica rapa HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
BraA10t44254Z Brassica rapa HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
Carub.0006s1566 Capsella rubella HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
CARHR195770 Cardamine hirsuta HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
Thhalv10013707m.g Eutrema salsugineum HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
Os02g0605600 Oryza sativa ssp. japonica HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
Sp6g26780 Schrenkiella parvula HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 91.8
Sc16g0010470 Simmondsia chinensis HOM05D004200 ORTHO05D004996 8.7e-20 99.8 49 89.8
Peaxi162Scf00353g00751 Petunia axillaris HOM05D004200 ORTHO05D004996 1.1e-19 99.4 49 91.8
HPP92_004648 Vanilla planifolia HOM05D004200 ORTHO05D004996 1.1e-19 99.4 49 89.8
SalBow1G8230 Salvia bowleyana HOM05D004200 ORTHO05D004996 1.5e-19 99.0 49 89.8
C03p09760 Brassica napus HOM05D004200 ORTHO05D004996 1.9e-19 98.6 49 89.8
Nitab4.5_0000582g0030 Nicotiana tabacum HOM05D004200 ORTHO05D004996 1.9e-19 98.6 49 91.8
Oeu034779.1 Olea europaea HOM05D004200 ORTHO05D004996 1.9e-19 98.6 64 68.8
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 1.9e-19 98.6 49 89.8
AL6G28510 Arabidopsis lyrata HOM05D004200 ORTHO05D004996 2.5e-19 98.2 49 91.8
SGA_v2.0_scaffold340G49307 Striga asiatica HOM05D004200 ORTHO05D004996 3.3e-19 97.8 49 87.8
AagrBONN_evm.TU.Sc2ySwM_368.146 Anthoceros agrestis HOM05D004200 ORTHO05D004996 4.3e-19 97.4 49 87.8
ClCG11G009760 Citrullus lanatus HOM05D004200 ORTHO05D004996 4.3e-19 97.4 49 87.8
MELO3C008563.2 Cucumis melo HOM05D004200 ORTHO05D004996 4.3e-19 97.4 49 87.8
CsaV3_2G010530 Cucumis sativus L. HOM05D004200 ORTHO05D004996 4.3e-19 97.4 49 87.8
Peaxi162Scf00742g00213 Petunia axillaris HOM05D004200 ORTHO05D004996 4.3e-19 97.4 66 69.7
Solyc05g056280.2 Solanum lycopersicum HOM05D004200 ORTHO05D004996 4.3e-19 97.4 49 89.8
Sopen05g034670 Solanum pennellii HOM05D004200 ORTHO05D004996 4.3e-19 97.4 49 89.8
PGSC0003DMG402023454 Solanum tuberosum HOM05D004200 ORTHO05D004996 4.3e-19 97.4 49 89.8
CAN.G1921.6 Capsicum annuum HOM05D004200 ORTHO05D004996 5.6e-19 97.1 49 89.8
SalBow6G2550 Salvia bowleyana HOM05D004200 ORTHO05D004996 5.6e-19 97.1 64 70.3
THA.LOC104802907 Tarenaya hassleriana HOM05D004200 ORTHO05D004996 5.6e-19 97.1 49 87.8
Migut.F02106 Erythranthe guttata HOM05D004200 ORTHO05D004996 7.4e-19 96.7 49 85.7
Zm00001eb064140 Zea mays HOM05D004200 ORTHO05D004996 7.4e-19 96.7 49 87.8
Zm00001eb210930 Zea mays HOM05D004200 ORTHO05D004996 7.4e-19 96.7 49 87.8
unitig_26.g9576 Utricularia gibba HOM05D004200 ORTHO05D004996 1.3e-18 95.9 49 85.7
BcaB01g05204 Brassica carinata HOM05D004200 ORTHO05D004996 1.6e-18 95.5 49 87.8
BolC3t13465H Brassica oleracea HOM05D004200 ORTHO05D004996 1.6e-18 95.5 49 87.8
SEGI_29242 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 1.6e-18 95.5 49 85.7
SEGI_38734 Sequoiadendron giganteum HOM05D004200 ORTHO05D004996 1.6e-18 95.5 49 85.7
MSTRG.8204 Avicennia marina HOM05D004200 ORTHO05D004996 3.6e-18 94.4 49 85.7
Oeu064498.2 Olea europaea HOM05D004200 ORTHO05D004996 6.2e-18 93.6 49 83.7
Sc09g0001390 Simmondsia chinensis HOM05D004200 ORTHO05D004996 1.4e-17 92.4 49 85.7
Pp3c16_8650 Physcomitrium patens HOM05D004200 ORTHO05D004996 4.0e-17 90.9 49 81.6
Pp3c25_5550 Physcomitrium patens HOM05D004200 ORTHO05D004996 4.0e-17 90.9 49 81.6
SMO174G0194 Selaginella moellendorffii HOM05D004200 ORTHO05D004996 9.0e-17 89.7 49 79.6
CBR_g36466 Chara braunii HOM05D004200 ORTHO05D004996 1.5e-16 89.0 49 81.6
Dinv29084 Davidia involucrata HOM05D004200 ORTHO05D004996 1.9e-14 82.0 45 86.7
C03p51090 Brassica napus HOM05D004200 ORTHO05D004996 6.7e-12 73.6 38 84.2
Mapoly0074s0043 Marchantia polymorpha HOM05D004200 ORTHO05D004996 4.8e-10 67.4 50 66.0


User provided reference genes

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