Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A274G38 Lonicera japonica HOM05D003237 ORTHO05D003631 1.5e-75 286.6 196 100.0
Dinv05234 Davidia involucrata HOM05D003237 ORTHO05D003631 8.2e-26 121.3 144 63.9
Dinv02325 Davidia involucrata HOM05D003237 ORTHO05D003631 9.0e-25 117.9 142 71.8
TAR636G1985 Trochodendron aralioides HOM05D003237 ORTHO05D003631 6.0e-21 105.1 151 60.3
Rhsim01G0196700 Rhododendron simsii HOM05D003237 ORTHO05D003631 1.3e-18 97.4 144 77.1
MD00G1031700 Malus domestica HOM05D003237 ORTHO05D003631 2.4e-17 93.2 150 64.7
Manes.11G111400 Manihot esculenta HOM05D003237 ORTHO05D003631 3.4e-16 89.4 143 54.5
CSS0011655 Camellia sinensis var. sinensis HOM05D003237 ORTHO05D003631 1.7e-15 87.0 147 73.5
CSS0037994 Camellia sinensis var. sinensis HOM05D003237 ORTHO05D003631 2.2e-15 86.7 147 70.7
Sed0018000 Sechium edule HOM05D003237 ORTHO05D003631 2.9e-15 86.3 98 77.6
Nn7g37294 Nelumbo nucifera HOM05D003237 ORTHO05D003631 3.8e-15 85.9 145 78.6
HanXRQChr13g0420901 Helianthus annuus HOM05D003237 ORTHO05D003631 5.0e-15 85.5 167 63.5
Ciclev10014331m.g Citrus clementina HOM05D003237 ORTHO05D003631 6.5e-15 85.1 162 59.9
MELO3C015627.2 Cucumis melo HOM05D003237 ORTHO05D003631 6.5e-15 85.1 153 69.3
CsaV3_1G042090 Cucumis sativus L. HOM05D003237 ORTHO05D003631 1.4e-14 84.0 153 69.3
TWI75G1610 Tripterygium wilfordii HOM05D003237 ORTHO05D003631 1.4e-14 84.0 151 66.9
PGR119G2033 Punica granatum HOM05D003237 ORTHO05D003631 2.5e-14 83.2 160 63.8
Hund20982 Selenicereus undatus HOM05D003237 ORTHO05D003631 3.2e-14 82.8 142 59.2
HanXRQChr03g0091691 Helianthus annuus HOM05D003237 ORTHO05D003631 2.1e-13 80.1 174 44.8
GSVIVG01037454001 Vitis vinifera HOM05D003237 ORTHO05D003631 4.6e-13 79.0 138 55.1
CANSAT54G1397 Cannabis sativa HOM05D003237 ORTHO05D003631 1.0e-12 77.8 152 53.9
FAN25G1344 Fragaria x ananassa HOM05D003237 ORTHO05D003631 1.4e-12 77.4 154 63.0
Atru.chr3.3010 Acer truncatum HOM05D003237 ORTHO05D003631 2.3e-12 76.6 156 49.4
Sc06g0008520 Simmondsia chinensis HOM05D003237 ORTHO05D003631 6.7e-12 75.1 138 59.4
FAN16G3041 Fragaria x ananassa HOM05D003237 ORTHO05D003631 1.5e-11 73.9 156 62.8
GSVIVG01027348001 Vitis vinifera HOM05D003237 ORTHO05D003631 1.5e-11 73.9 154 57.1
FvH4_3g27130 Fragaria vesca HOM05D003237 ORTHO05D003631 5.7e-11 72.0 154 59.1
FAN21G2928 Fragaria x ananassa HOM05D003237 ORTHO05D003631 5.7e-11 72.0 154 58.4
Gorai.004G001800 Gossypium raimondii HOM05D003237 ORTHO05D003631 5.7e-11 72.0 151 57.6
FAN11G2711 Fragaria x ananassa HOM05D003237 ORTHO05D003631 7.4e-11 71.6 155 59.4
Gohir.D08G008600 Gossypium hirsutum HOM05D003237 ORTHO05D003631 7.4e-11 71.6 154 58.4
Sed0025717 Sechium edule HOM05D003237 ORTHO05D003631 7.4e-11 71.6 98 67.3
Prupe.6G153800 Prunus persica HOM05D003237 ORTHO05D003631 1.7e-10 70.5 150 70.0
Duzib168G1536 Durio zibethinus HOM05D003237 ORTHO05D003631 2.2e-10 70.1 138 71.7
Sopen01g004580 Solanum pennellii HOM05D003237 ORTHO05D003631 4.8e-10 68.9 153 53.6
Solyc01g009090.3 Solanum lycopersicum HOM05D003237 ORTHO05D003631 6.3e-10 68.6 152 53.9
TWI31G0528 Tripterygium wilfordii HOM05D003237 ORTHO05D003631 1.1e-09 67.8 151 69.5
TWI79G1622 Tripterygium wilfordii HOM05D003237 ORTHO05D003631 1.4e-09 67.4 144 67.4
vmacro14291 Vaccinium macrocarpon HOM05D003237 ORTHO05D003631 2.4e-09 66.6 151 67.5
Nitab4.5_0000428g0160 Nicotiana tabacum HOM05D003237 ORTHO05D003631 5.3e-09 65.5 150 56.7
SGA_v2.0_scaffold79G25511 Striga asiatica HOM05D003237 ORTHO05D003631 5.3e-09 65.5 157 52.9
Cc01_g07580 Coffea canephora HOM05D003237 ORTHO05D003631 9.1e-09 64.7 177 46.9
MD11G1180900 Malus domestica HOM05D003237 ORTHO05D003631 1.2e-08 64.3 152 62.5
Sabra04G0133100 Salix brachista HOM05D003237 ORTHO05D003631 1.2e-08 64.3 149 68.5
MSTRG.17661 Avicennia marina HOM05D003237 ORTHO05D003631 1.5e-08 63.9 103 54.4
Migut.N02418 Erythranthe guttata HOM05D003237 ORTHO05D003631 4.5e-08 62.4 101 60.4
Gohir.A08G000080 Gossypium hirsutum HOM05D003237 ORTHO05D003631 4.5e-08 62.4 149 67.8
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 4.5e-08 62.4 128 53.1
RcHm_v2.0_Chr5g0049831 Rosa chinensis HOM05D003237 ORTHO05D003631 7.7e-08 61.6 154 65.6
CAN.G651.1 Capsicum annuum HOM05D003237 ORTHO05D003631 1.7e-07 60.5 167 55.7
Gohir.D13G235500 Gossypium hirsutum HOM05D003237 ORTHO05D003631 1.7e-07 60.5 151 66.9
Gorai.013G266200 Gossypium raimondii HOM05D003237 ORTHO05D003631 1.7e-07 60.5 151 63.6
THA.LOC104826477 Tarenaya hassleriana HOM05D003237 ORTHO05D003631 1.7e-07 60.5 104 53.8
SalBow3G0543 Salvia bowleyana HOM05D003237 ORTHO05D003631 2.2e-07 60.1 104 70.2
Hund18830 Selenicereus undatus HOM05D003237 ORTHO05D003631 3.8e-07 59.3 146 46.6
COL.COLO4_18368 Corchorus olitorius HOM05D003237 ORTHO05D003631 6.5e-07 58.5 98 61.2
Gohir.A13G230000 Gossypium hirsutum HOM05D003237 ORTHO05D003631 1.1e-06 57.8 151 66.2
Potri.004G196400 Populus trichocarpa HOM05D003237 ORTHO05D003631 1.1e-06 57.8 147 67.3
Lsat_1_v5_gn_3_116081 Lactuca sativa HOM05D003237 ORTHO05D003631 5.5e-06 55.5 26 96.2
Thhalv10001919m.g Eutrema salsugineum HOM05D003237 ORTHO05D003631 7.2e-06 55.1 98 59.2
Nitab4.5_0002300g0140 Nicotiana tabacum HOM05D003237 ORTHO05D003631 7.2e-06 55.1 148 54.1


User provided reference genes

Program Settings