Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 0.0e+00 1584.3 818 100.0
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1214.5 817 78.2
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1208.0 815 78.2
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1157.5 815 74.6
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1157.5 815 74.6
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1133.2 817 71.6
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 1107.8 818 72.1
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1088.9 818 70.4
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 1084.7 817 71.1
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1080.1 816 70.3
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 8.3e-306 1053.5 822 69.6
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 1.6e-304 1049.3 819 67.3
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 4.5e-304 1047.7 814 68.2
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 5.9e-304 1047.3 816 68.8
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 2.2e-303 1045.4 815 69.2
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 2.1e-301 1038.9 818 67.4
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 1.3e-298 1029.6 818 68.1
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 2.8e-298 1028.5 820 68.5
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 6.3e-298 1027.3 814 67.8
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 8.3e-298 1026.9 817 67.9
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 1.4e-297 1026.2 821 66.7
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 2.4e-297 1025.4 854 66.4
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 5.4e-297 1024.2 819 69.0
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 7.0e-297 1023.8 817 66.1
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 1.7e-295 1019.2 814 67.1
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 6.6e-295 1017.3 817 65.9
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 8.6e-295 1016.9 821 65.9
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 8.6e-295 1016.9 814 66.7
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 5.6e-294 1014.2 818 65.6
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 9.5e-294 1013.4 814 66.6
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 4.7e-293 1011.1 818 65.5
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 1.0e-292 1010.0 820 66.6
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 3.0e-292 1008.4 822 65.9
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 1.2e-291 1006.5 823 67.0
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 1.5e-291 1006.1 817 65.5
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 2.0e-291 1005.7 822 65.8
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 3.4e-291 1005.0 817 66.1
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 4.9e-290 1001.1 817 67.3
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 1.4e-289 999.6 827 65.2
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 3.2e-289 998.4 820 64.6
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 4.1e-289 998.0 825 66.2
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 3.5e-288 995.0 817 65.4
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 1.3e-287 993.0 817 66.3
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 1.5e-286 989.6 819 64.3
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 2.5e-286 988.8 818 64.3
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 1.2e-285 986.5 816 65.2
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 6.2e-285 984.2 819 64.2
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 1.4e-284 983.0 817 64.7
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 3.1e-284 981.9 867 62.1
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 5.2e-284 981.1 817 65.1
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 1.1e-281 973.4 816 64.0
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 8.6e-279 963.8 815 63.6
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 7.3e-278 960.7 815 63.6
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 1.6e-277 959.5 816 62.4
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 4.7e-277 958.0 815 63.2
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 1.1e-276 956.8 816 62.6
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 6.8e-276 954.1 815 63.3
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 7.5e-275 950.7 815 62.6
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 6.4e-274 947.6 816 64.0
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 1.4e-273 946.4 815 62.3
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 1.9e-273 946.0 817 61.0
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 2.4e-273 945.7 821 62.5
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 9.2e-273 943.7 821 62.6
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 1.6e-272 943.0 814 61.1
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 3.5e-272 941.8 817 61.0
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 1.4e-268 929.9 813 62.2
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 3.1e-268 928.7 821 61.3
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 1.5e-267 926.4 846 60.3
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 8.4e-266 920.6 815 61.8
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 1.0e-263 913.7 805 62.1
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 1.4e-260 903.3 819 60.6
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 4.0e-260 901.7 816 60.0
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 7.1e-257 891.0 818 58.3
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 7.1e-257 891.0 815 60.0
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 5.8e-251 871.3 816 59.6
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 3.9e-239 832.0 818 57.0
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 1.2e-235 820.5 818 56.5
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 1.2e-235 820.5 818 56.5
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 1.2e-235 820.5 818 56.5
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 5.8e-235 818.1 818 56.1
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 1.3e-234 817.0 818 56.4
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 4.9e-234 815.1 679 64.2
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 4.2e-233 812.0 816 53.6
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 5.5e-233 811.6 825 55.8
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 7.1e-233 811.2 679 64.1
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 1.6e-232 810.1 817 56.2
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 4.6e-232 808.5 819 56.2
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 3.0e-231 805.8 825 55.3
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 1.1e-228 797.3 823 54.7
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 4.5e-227 792.0 817 53.6
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 8.5e-226 787.7 826 54.6
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 1.1e-225 787.3 824 54.0
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 5.5e-225 785.0 814 54.1
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 7.0e-172 608.6 818 45.6
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 2.0e-166 590.5 810 47.2
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 3.5e-163 579.7 785 45.7
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 2.2e-112 411.0 847 34.9
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.9e-108 397.9 340 59.1
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.6e-107 393.3 313 62.3
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 5.7e-105 386.3 278 70.1
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 4.5e-102 376.7 570 42.5
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 4.2e-92 343.6 290 65.2
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 1.2e-81 308.9 215 72.6
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.7e-80 303.9 385 44.7
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.7e-69 268.5 330 48.5
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 8.6e-69 266.2 571 33.5
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 4.5e-62 243.8 330 44.8
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 5.0e-61 240.4 185 67.6
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 3.6e-59 234.2 178 66.9
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 8.0e-59 233.0 818 29.2
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 1.0e-58 232.6 247 54.7
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 9.2e-47 193.0 918 24.1
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.1e-44 186.0 108 85.2
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 4.7e-43 180.6 206 50.5
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 4.0e-42 177.6 329 37.1
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.1e-36 159.5 98 79.6
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 7.3e-36 156.8 126 62.7
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 5.1e-29 134.0 103 67.0
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 9.3e-15 86.7 57 77.2
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.1e-11 75.5 60 61.7
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 9.3e-07 60.1 150 33.3
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 9.3e-07 60.1 65 52.3
SEGI_20776 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 6.0e-06 57.4 41 53.7


User provided reference genes

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