Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1A1156T44 Lonicera japonica HOM05D004135 ORTHO05D005558 8.5e-171 603.6 306 100.0
Hma1.2p1_0300F.1_g117980 Hydrangea macrophylla HOM05D004135 ORTHO05D005558 1.0e-144 516.9 302 85.8
Lj2A337T32 Lonicera japonica HOM05D004135 ORTHO05D005558 5.2e-144 514.6 299 86.0
Nitab4.5_0012414g0010 Nicotiana tabacum HOM05D004135 ORTHO05D005558 1.5e-143 513.1 301 84.7
Nitab4.5_0001219g0030 Nicotiana tabacum HOM05D004135 ORTHO05D005558 2.0e-143 512.7 301 84.7
Peaxi162Scf00195g00518 Petunia axillaris HOM05D004135 ORTHO05D005558 3.3e-143 511.9 302 83.8
Sc24g0002580 Simmondsia chinensis HOM05D004135 ORTHO05D005558 5.7e-143 511.1 302 85.4
GSVIVG01021747001 Vitis vinifera HOM05D004135 ORTHO05D005558 5.7e-143 511.1 302 85.4
Lsat_1_v5_gn_1_86700 Lactuca sativa HOM05D004135 ORTHO05D005558 2.8e-142 508.8 299 84.9
Oeu060331.1 Olea europaea HOM05D004135 ORTHO05D005558 2.8e-142 508.8 307 84.0
Cfa000762 Carpinus fangiana HOM05D004135 ORTHO05D005558 6.3e-142 507.7 301 84.4
TAR629G2923 Trochodendron aralioides HOM05D004135 ORTHO05D005558 6.3e-142 507.7 302 84.4
PSO541G2415 Papaver somniferum HOM05D004135 ORTHO05D005558 2.4e-141 505.8 302 84.8
CiPaw.09G148400 Carya illinoinensis HOM05D004135 ORTHO05D005558 7.0e-141 504.2 301 83.4
MELO3C007042.2 Cucumis melo HOM05D004135 ORTHO05D005558 9.1e-141 503.8 303 82.8
PSO675G0864 Papaver somniferum HOM05D004135 ORTHO05D005558 2.0e-140 502.7 302 84.8
TAR627G0684 Trochodendron aralioides HOM05D004135 ORTHO05D005558 2.0e-140 502.7 302 84.1
CAN.G675.30 Capsicum annuum HOM05D004135 ORTHO05D005558 2.7e-140 502.3 301 83.1
Migut.M01941 Erythranthe guttata HOM05D004135 ORTHO05D005558 2.7e-140 502.3 299 84.6
QL05p064858 Quercus lobata HOM05D004135 ORTHO05D005558 3.5e-140 501.9 300 83.3
Solyc02g069585.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 3.5e-140 501.9 302 82.1
Sopen02g018720 Solanum pennellii HOM05D004135 ORTHO05D005558 5.9e-140 501.1 302 82.1
SalBow8G1631 Salvia bowleyana HOM05D004135 ORTHO05D005558 7.7e-140 500.7 305 82.0
SalBow8G2729 Salvia bowleyana HOM05D004135 ORTHO05D005558 7.7e-140 500.7 305 82.0
PGSC0003DMG400021137 Solanum tuberosum HOM05D004135 ORTHO05D005558 1.7e-139 499.6 301 82.1
MSTRG.16319 Avicennia marina HOM05D004135 ORTHO05D005558 2.2e-139 499.2 301 83.4
ClCG01G025420 Citrullus lanatus HOM05D004135 ORTHO05D005558 2.2e-139 499.2 302 82.1
Gohir.A05G111900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 5.0e-139 498.0 300 82.3
Cpa.g.sc285.5 Carica papaya HOM05D004135 ORTHO05D005558 1.5e-138 496.5 301 82.4
DCAR_003828 Daucus carota HOM05D004135 ORTHO05D005558 1.5e-138 496.5 301 82.4
CsaV3_6G052670 Cucumis sativus L. HOM05D004135 ORTHO05D005558 1.9e-138 496.1 302 82.1
DCAR_007807 Daucus carota HOM05D004135 ORTHO05D005558 2.5e-138 495.7 303 82.8
MSTRG.7569 Avicennia marina HOM05D004135 ORTHO05D005558 4.2e-138 495.0 301 82.4
CANSAT35G0477 Cannabis sativa HOM05D004135 ORTHO05D005558 4.2e-138 495.0 301 82.1
PGSC0003DMG400031401 Solanum tuberosum HOM05D004135 ORTHO05D005558 5.5e-138 494.6 299 83.3
Manes.06G053900 Manihot esculenta HOM05D004135 ORTHO05D005558 7.2e-138 494.2 302 82.8
Potri.011G155800 Populus trichocarpa HOM05D004135 ORTHO05D005558 9.4e-138 493.8 300 82.7
Eucgr.D01026 Eucalyptus grandis HOM05D004135 ORTHO05D005558 1.6e-137 493.0 303 82.2
HanXRQChr04g0119201 Helianthus annuus HOM05D004135 ORTHO05D005558 1.6e-137 493.0 300 82.3
Sopen02g009560 Solanum pennellii HOM05D004135 ORTHO05D005558 2.1e-137 492.7 299 82.9
Sed0027064 Sechium edule HOM05D004135 ORTHO05D005558 1.0e-136 490.3 302 80.8
HanXRQChr11g0340901 Helianthus annuus HOM05D004135 ORTHO05D005558 1.4e-136 490.0 298 81.5
Solyc02g030243.1 Solanum lycopersicum HOM05D004135 ORTHO05D005558 1.4e-136 490.0 299 82.6
THA.LOC104798582 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 1.8e-136 489.6 306 79.7
Gorai.005G119100 Gossypium raimondii HOM05D004135 ORTHO05D005558 6.8e-136 487.6 301 80.1
Manes.14G126900 Manihot esculenta HOM05D004135 ORTHO05D005558 6.8e-136 487.6 302 81.8
Nn7g38349 Nelumbo nucifera HOM05D004135 ORTHO05D005558 1.5e-135 486.5 302 82.5
Gohir.D02G104900 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.0e-135 486.1 301 79.7
AUR62027344 Chenopodium quinoa HOM05D004135 ORTHO05D005558 2.6e-135 485.7 302 79.8
THA.LOC104814339 Tarenaya hassleriana HOM05D004135 ORTHO05D005558 2.6e-135 485.7 306 78.8
vmacro03457 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 2.6e-135 485.7 306 82.0
CDE02G1412 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 3.4e-135 485.3 302 81.8
Aa31LG6G11870 Aethionema arabicum HOM05D004135 ORTHO05D005558 4.4e-135 485.0 306 78.8
Ciclev10016127m.g Citrus clementina HOM05D004135 ORTHO05D005558 4.4e-135 485.0 301 80.4
Gohir.A02G088700 Gossypium hirsutum HOM05D004135 ORTHO05D005558 5.7e-135 484.6 301 80.1
Sed0006315 Sechium edule HOM05D004135 ORTHO05D005558 9.8e-135 483.8 303 80.5
SGA_v2.0_scaffold298G47640 Striga asiatica HOM05D004135 ORTHO05D005558 9.8e-135 483.8 334 76.0
Aqoxy6G00202 Aquilegia oxysepala HOM05D004135 ORTHO05D005558 1.3e-134 483.4 302 81.8
AUR62042515 Chenopodium quinoa HOM05D004135 ORTHO05D005558 1.4e-133 479.9 302 78.5
AT1G30630 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 4.1e-133 478.4 305 76.4
CSS0034299 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D005558 9.1e-133 477.2 315 78.7
Carub.0001s2889 Capsella rubella HOM05D004135 ORTHO05D005558 9.1e-133 477.2 305 76.4
Prupe.4G101800 Prunus persica HOM05D004135 ORTHO05D005558 9.1e-133 477.2 306 77.8
Duzib235G1539 Durio zibethinus HOM05D004135 ORTHO05D005558 1.2e-132 476.9 301 79.4
Sp1g26530 Schrenkiella parvula HOM05D004135 ORTHO05D005558 1.2e-132 476.9 306 76.5
AL1G44690 Arabidopsis lyrata HOM05D004135 ORTHO05D005558 1.6e-132 476.5 305 76.4
ATR0763G246 Amborella trichopoda HOM05D004135 ORTHO05D005558 2.7e-132 475.7 302 78.1
Aa31LG10G6460 Aethionema arabicum HOM05D004135 ORTHO05D005558 4.5e-132 474.9 306 77.8
PGR083G2348 Punica granatum HOM05D004135 ORTHO05D005558 5.9e-132 474.6 302 80.1
Lsat_1_v5_gn_7_31180 Lactuca sativa HOM05D004135 ORTHO05D005558 7.7e-132 474.2 300 80.3
EL10Ac8g19524 Beta vulgaris HOM05D004135 ORTHO05D005558 1.0e-131 473.8 302 77.8
Thhalv10008349m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 1.0e-131 473.8 306 76.1
BcaB07g32703 Brassica carinata HOM05D004135 ORTHO05D005558 1.7e-131 473.0 306 75.5
Thecc.06G007700 Theobroma cacao HOM05D004135 ORTHO05D005558 2.3e-131 472.6 306 77.8
vmacro10993 Vaccinium macrocarpon HOM05D004135 ORTHO05D005558 2.3e-131 472.6 448 59.8
Gohir.D05G112400 Gossypium hirsutum HOM05D004135 ORTHO05D005558 2.9e-131 472.2 300 78.7
BcaB06g28829 Brassica carinata HOM05D004135 ORTHO05D005558 8.6e-131 470.7 301 77.7
Duzib160G0522 Durio zibethinus HOM05D004135 ORTHO05D005558 8.6e-131 470.7 301 78.1
TWI81G0788 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 1.1e-130 470.3 303 79.2
unitig_748.g7354 Utricularia gibba HOM05D004135 ORTHO05D005558 1.5e-130 469.9 299 78.9
BcaC01g05751 Brassica carinata HOM05D004135 ORTHO05D005558 2.5e-130 469.2 301 76.7
C03p22580 Brassica napus HOM05D004135 ORTHO05D005558 2.5e-130 469.2 301 76.7
Ah.11g045310 Amaranthus hybridus HOM05D004135 ORTHO05D005558 4.2e-130 468.4 303 76.2
Sabra11G0144000 Salix brachista HOM05D004135 ORTHO05D005558 4.2e-130 468.4 303 78.2
BcaC05g27087 Brassica carinata HOM05D004135 ORTHO05D005558 5.5e-130 468.0 306 74.5
C05p29690 Brassica napus HOM05D004135 ORTHO05D005558 5.5e-130 468.0 306 74.5
BolC3t14655H Brassica oleracea HOM05D004135 ORTHO05D005558 5.5e-130 468.0 301 77.1
BolC5t31698H Brassica oleracea HOM05D004135 ORTHO05D005558 5.5e-130 468.0 306 74.5
CARHR030110 Cardamine hirsuta HOM05D004135 ORTHO05D005558 7.2e-130 467.6 306 75.2
Nn4g26687 Nelumbo nucifera HOM05D004135 ORTHO05D005558 7.2e-130 467.6 302 78.5
Sp4g17120 Schrenkiella parvula HOM05D004135 ORTHO05D005558 9.5e-130 467.2 306 76.5
Actinidia32352 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.2e-129 466.8 303 80.2
A09p35780 Brassica napus HOM05D004135 ORTHO05D005558 1.2e-129 466.8 306 74.2
BraA03t11189Z Brassica rapa HOM05D004135 ORTHO05D005558 1.2e-129 466.8 301 76.1
BraA09t39101Z Brassica rapa HOM05D004135 ORTHO05D005558 1.2e-129 466.8 306 74.2
Gorai.009G116600 Gossypium raimondii HOM05D004135 ORTHO05D005558 1.2e-129 466.8 300 78.0
Thhalv10017028m.g Eutrema salsugineum HOM05D004135 ORTHO05D005558 2.1e-129 466.1 301 78.1
AT2G34840 Arabidopsis thaliana HOM05D004135 ORTHO05D005558 3.6e-129 465.3 301 77.4
A03p19330 Brassica napus HOM05D004135 ORTHO05D005558 4.7e-129 464.9 298 76.8
BraA04t18166Z Brassica rapa HOM05D004135 ORTHO05D005558 4.7e-129 464.9 306 76.1
arahy.Tifrunner.gnm1.ann1.CJHC7K Arachis hypogaea HOM05D004135 ORTHO05D005558 6.1e-129 464.5 302 76.8
Ca_00931_v3 Cicer arietinum L. HOM05D004135 ORTHO05D005558 1.4e-128 463.4 302 76.5
Os04g0612600 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 1.4e-128 463.4 302 76.5
MBI18_g26296_MAGBIO Magnolia biondii HOM05D004135 ORTHO05D005558 2.3e-128 462.6 307 77.5
Zm00001eb430730 Zea mays HOM05D004135 ORTHO05D005558 3.0e-128 462.2 302 76.5
C04p64030 Brassica napus HOM05D004135 ORTHO05D005558 4.0e-128 461.8 301 76.4
A04p26610 Brassica napus HOM05D004135 ORTHO05D005558 5.2e-128 461.5 301 76.4
Actinidia31378 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.5e-127 459.9 273 85.3
Glyma.15G136100 Glycine max HOM05D004135 ORTHO05D005558 1.5e-127 459.9 299 75.3
Lj6g0020585 Lotus japonicus HOM05D004135 ORTHO05D005558 2.0e-127 459.5 302 74.8
BcaC02g07752 Brassica carinata HOM05D004135 ORTHO05D005558 2.6e-127 459.1 301 76.1
Carub.0004s1652 Capsella rubella HOM05D004135 ORTHO05D005558 2.6e-127 459.1 301 76.1
BolC4t27879H Brassica oleracea HOM05D004135 ORTHO05D005558 3.4e-127 458.8 301 76.1
TWI15G0841 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 3.4e-127 458.8 305 77.0
HPP92_013200 Vanilla planifolia HOM05D004135 ORTHO05D005558 4.4e-127 458.4 300 76.7
Phvul.006G122500 Phaseolus vulgaris HOM05D004135 ORTHO05D005558 1.3e-126 456.8 299 74.9
Medtr2g032130 Medicago truncatula HOM05D004135 ORTHO05D005558 2.2e-126 456.1 302 75.2
TWI38G0133 Tripterygium wilfordii HOM05D004135 ORTHO05D005558 4.9e-126 454.9 305 76.7
Glyma.09G030400 Glycine max HOM05D004135 ORTHO05D005558 1.4e-125 453.4 299 73.9
Lalb_Chr20g0120301 Lupinus albus HOM05D004135 ORTHO05D005558 1.0e-123 447.2 302 73.8
ECA236G2122 Erigeron canadensis HOM05D000091 ORTHO05D001510 1.3e-123 446.8 286 78.7
Atru.chr6.3256 Acer truncatum HOM05D004135 ORTHO05D005558 3.3e-122 442.2 304 74.3
Dinv04216 Davidia involucrata HOM05D004135 ORTHO05D005558 4.7e-121 438.3 246 89.0
Oeu052702.4 Olea europaea HOM05D004135 ORTHO05D005558 1.0e-120 437.2 311 73.6
RcHm_v2.0_Chr5g0018341 Rosa chinensis HOM05D004135 ORTHO05D005558 5.2e-120 434.9 307 73.0
MD05G1263700 Malus domestica HOM05D004135 ORTHO05D005558 1.5e-119 433.3 306 71.9
VMungo0540G1545 Vigna mungo HOM05D004135 ORTHO05D005558 2.2e-118 429.5 299 71.9
FAN21G1456 Fragaria x ananassa HOM05D004135 ORTHO05D005558 3.7e-118 428.7 306 70.6
FAN25G0882 Fragaria x ananassa HOM05D004135 ORTHO05D005558 3.7e-118 428.7 301 71.8
FAN16G1287 Fragaria x ananassa HOM05D004135 ORTHO05D005558 6.4e-118 427.9 306 70.6
Haze_08569 Corylus avellana HOM05D004135 ORTHO05D005558 1.9e-117 426.4 319 70.5
FvH4_3g11400 Fragaria vesca HOM05D004135 ORTHO05D005558 5.4e-117 424.9 306 70.3
Cc09_g07090 Coffea canephora HOM05D004135 ORTHO05D005558 3.0e-115 419.1 231 88.7
MD10G1241400 Malus domestica HOM05D004135 ORTHO05D005558 2.1e-113 412.9 305 68.2
Psat1g164080 Pisum sativum HOM05D004135 ORTHO05D005558 2.3e-112 409.5 268 74.6
TPR.G8030 Trifolium pratense HOM05D004135 ORTHO05D005558 5.8e-111 404.8 269 75.1
Pp3c27_2170 Physcomitrium patens HOM05D004135 ORTHO05D005558 7.5e-111 404.4 302 66.2
Pp3c6_18240 Physcomitrium patens HOM05D004135 ORTHO05D005558 1.7e-110 403.3 302 66.2
Pp3c16_16890 Physcomitrium patens HOM05D004135 ORTHO05D005558 8.3e-110 401.0 302 65.6
Zm00001eb432010 Zea mays HOM05D004135 ORTHO05D005558 3.9e-107 392.1 305 66.9
Mapoly0002s0056 Marchantia polymorpha HOM05D004135 ORTHO05D005558 1.1e-106 390.6 295 65.4
Rhsim02G0165800 Rhododendron simsii HOM05D004135 ORTHO05D005558 3.3e-106 389.0 310 68.1
Os04g0644700 Oryza sativa ssp. japonica HOM05D004135 ORTHO05D005558 8.1e-105 384.4 306 66.0
arahy.Tifrunner.gnm1.ann1.NB4WMM Arachis hypogaea HOM05D004135 ORTHO05D005558 5.2e-104 381.7 233 79.8
AagrBONN_evm.TU.Sc2ySwM_117.3836 Anthoceros agrestis HOM05D004135 ORTHO05D005558 7.3e-98 361.3 301 62.1
Actinidia25200 Actinidia chinensis HOM05D004135 ORTHO05D005558 1.7e-91 340.1 215 80.5
SMO358G0532 Selaginella moellendorffii HOM05D004135 ORTHO05D005558 2.7e-84 316.2 297 56.9
COL.COLO4_26892 Corchorus olitorius HOM05D004135 ORTHO05D005558 1.4e-80 303.9 282 59.9
Cre13.g592450 Chlamydomonas reinhardtii HOM05D004135 ORTHO05D005558 1.9e-77 293.5 299 52.2
CBR_g34668 Chara braunii HOM05D004135 ORTHO05D005558 1.9e-74 283.5 297 50.8
CDE06G2577 Ceratophyllum demersum HOM05D004135 ORTHO05D005558 5.8e-71 271.9 164 82.3
PRCOL_00001868 Prasinoderma coloniale HOM05D004135 ORTHO05D005558 1.9e-69 266.9 296 47.0
MCO11G236 Micromonas commoda HOM05D004135 ORTHO05D005558 2.1e-68 263.5 293 47.1
Zm00001eb274480 Zea mays HOM05D004135 ORTHO05D005558 3.1e-56 223.0 166 66.9
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 1.0e-54 218.0 163 68.7
Thecc.06G007200 Theobroma cacao HOM05D004135 ORTHO05D005558 6.5e-54 215.3 125 84.0
COL.COLO4_29004 Corchorus olitorius HOM05D004135 ORTHO05D005558 3.3e-50 203.0 140 73.6
SGA_v2.0_scaffold147G36337 Striga asiatica HOM05D004135 ORTHO05D401852 4.8e-25 119.4 124 50.8
Zm00001eb135420 Zea mays HOM05D004135 ORTHO05D443401 4.8e-25 119.4 82 75.6
Zm00001eb194710 Zea mays HOM05D004186 ORTHO05D006965 8.3e-25 118.6 100 64.0
SGA_v2.0_scaffold147G36336 Striga asiatica HOM05D004135 ORTHO05D000001 1.2e-23 114.8 152 42.8
Zm00001eb059010 Zea mays HOM05D004186 ORTHO05D006965 2.7e-23 113.6 100 62.0
Zm00001eb347580 Zea mays HOM05D004186 ORTHO05D006965 2.9e-22 110.2 100 61.0
AUR62011277 Chenopodium quinoa HOM05D004135 ORTHO05D138132 1.9e-21 107.5 52 94.2
Zm00001eb180170 Zea mays HOM05D004135 ORTHO05D444922 7.2e-21 105.5 87 65.5
CSS0024113 Camellia sinensis var. sinensis HOM05D004135 ORTHO05D028393 6.1e-20 102.4 60 81.7
RcHm_v2.0_Chr6g0289631 Rosa chinensis HOM05D004135 ORTHO05D008146 1.4e-19 101.3 66 74.2
Zm00001eb388920 Zea mays HOM05D000787 ORTHO05D001019 2.0e-18 97.4 80 65.0
RcHm_v2.0_Chr6g0289621 Rosa chinensis HOM05D004135 ORTHO05D028393 1.2e-15 88.2 82 57.3
RcHm_v2.0_Chr0c29g0501101 Rosa chinensis HOM05D004135 ORTHO05D028393 9.5e-13 78.6 70 57.1
RcHm_v2.0_Chr1g0337861 Rosa chinensis HOM05D004135 ORTHO05D028393 9.5e-13 78.6 70 57.1
Zm00001eb297670 Zea mays HOM05D004958 ORTHO05D005983 2.3e-11 73.9 55 69.1
AUR62044460 Chenopodium quinoa HOM05D004135 ORTHO05D137931 1.4e-08 64.7 36 80.6
Zm00001eb373640 Zea mays HOM05D004135 ORTHO05D444823 2.7e-07 60.5 60 58.3
VMungo0540G1336 Vigna mungo HOM05D000328 ORTHO05D000191 7.8e-07 58.9 36 66.7


User provided reference genes

Program Settings