Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 8.8e-99 363.6 183 100.0
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 7.5e-90 334.0 183 90.2
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 1.3e-89 333.2 183 89.1
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 1.3e-89 333.2 183 89.1
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 2.8e-89 332.0 183 91.3
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 88.0
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 88.0
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 89.6
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 2.4e-88 328.9 183 89.6
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 2.0e-87 325.9 183 86.9
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.0e-86 323.6 183 86.3
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 1.9e-85 319.3 183 86.9
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 4.2e-85 318.2 183 85.2
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 2.1e-84 315.8 183 83.6
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 4.7e-84 314.7 182 83.0
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 83.1
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 8.0e-84 313.9 183 83.6
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 2.3e-83 312.4 183 82.0
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 2.3e-83 312.4 182 83.5
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 81.4
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.0e-83 312.0 183 81.4
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 5.2e-83 311.2 181 82.3
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 82.0
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 81.4
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 82.0
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 6.8e-83 310.8 183 83.1
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 81.4
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 82.5
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 82.5
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 82.5
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 1.2e-82 310.1 183 81.4
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 2.0e-82 309.3 183 82.0
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 2.0e-82 309.3 182 82.4
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 82.5
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.6e-82 308.9 183 82.0
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 80.3
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 3.4e-82 308.5 183 82.0
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 81.4
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 4.4e-82 308.1 182 81.9
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 4.4e-82 308.1 183 82.5
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 7.5e-82 307.4 183 80.9
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 82.0
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 82.5
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 9.8e-82 307.0 183 82.0
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 1.3e-81 306.6 183 81.4
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.7e-81 306.2 183 80.9
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 82.0
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 2.8e-81 305.4 183 81.4
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 80.9
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 3.7e-81 305.1 183 80.9
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 4.9e-81 304.7 183 80.3
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 8.3e-81 303.9 183 80.3
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 1.4e-80 303.1 183 79.8
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 1.8e-80 302.8 183 80.9
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 2.4e-80 302.4 183 79.8
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 81.2
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 4.1e-80 301.6 183 79.8
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 4.1e-80 301.6 183 79.8
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 5.4e-80 301.2 183 78.7
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 9.2e-80 300.4 184 79.3
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 9.2e-80 300.4 181 80.1
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 2.0e-79 299.3 183 78.7
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 3.5e-79 298.5 183 79.2
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 79.2
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 78.7
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 77.0
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 7.8e-79 297.4 183 77.0
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.0e-78 297.0 183 78.7
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 1.3e-78 296.6 183 78.7
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.3e-78 296.6 183 77.6
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 1.3e-78 296.6 183 78.7
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 78.7
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.7e-78 296.2 183 77.0
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 3.8e-78 295.0 181 79.6
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 5.0e-78 294.7 183 76.5
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 6.6e-78 294.3 183 76.0
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 6.6e-78 294.3 183 76.5
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 6.6e-78 294.3 190 75.8
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 8.6e-78 293.9 183 79.2
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 1.5e-77 293.1 181 77.3
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 1.5e-77 293.1 181 77.9
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.9e-77 292.7 182 77.5
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.5e-77 292.4 184 76.6
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 3.3e-77 292.0 181 77.3
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 3.3e-77 292.0 181 76.8
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 77.3
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 76.8
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 4.3e-77 291.6 184 78.8
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 4.3e-77 291.6 183 79.2
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.2e-76 290.0 183 78.7
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 78.5
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 77.9
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 77.9
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 77.9
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 77.9
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 77.9
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.8e-76 288.9 181 77.9
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.8e-76 288.9 181 77.9
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 3.6e-76 288.5 181 76.8
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 8.0e-76 287.3 184 76.1
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.0e-75 287.0 183 76.5
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.8e-75 286.2 183 76.5
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 4.0e-75 285.0 181 76.8
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 8.9e-75 283.9 181 76.8
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 8.9e-75 283.9 155 89.0
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 2.0e-74 282.7 181 76.2
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 2.6e-74 282.3 183 73.8
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 4.4e-74 281.6 183 73.8
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 5.8e-74 281.2 184 73.9
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 2.9e-73 278.9 183 71.0
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 6.4e-73 277.7 183 73.8
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 6.4e-73 277.7 182 75.8
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 4.1e-72 275.0 183 72.1
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 3.5e-71 271.9 183 69.4
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 4.6e-71 271.6 183 70.5
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 6.0e-71 271.2 152 88.8
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 2.3e-70 269.2 228 61.8
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 6.6e-70 267.7 182 69.2
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 6.6e-70 267.7 184 68.5
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 5.6e-69 264.6 219 62.6
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.1e-67 260.4 185 69.7
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 1.4e-67 260.0 183 73.8
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 6.8e-67 257.7 181 68.0
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.2e-66 256.9 152 80.3
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 4.1e-64 248.4 155 78.1
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 5.0e-62 241.5 183 66.1
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 4.7e-60 235.0 188 67.0
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 2.3e-59 232.6 181 66.3
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 8.9e-59 230.7 138 80.4
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 4.4e-58 228.4 181 65.7
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 2.2e-57 226.1 183 65.0
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 5.1e-54 214.9 138 72.5
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.5e-50 203.4 183 59.6
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.6e-50 202.6 174 60.9
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.3e-49 200.3 179 59.8
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 2.2e-49 199.5 155 65.2
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.6e-47 193.4 152 61.2
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 6.0e-47 191.4 158 60.8
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.3e-46 189.5 102 88.2
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 5.6e-45 184.9 102 88.2
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 3.6e-44 182.2 102 85.3
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 4.0e-43 178.7 186 49.5
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.3e-41 173.7 99 82.8
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.1e-40 170.6 100 82.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.1e-40 170.6 100 79.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 1.2e-39 167.2 158 55.7
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.6e-39 166.8 132 58.3
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 3.6e-36 155.6 106 67.9
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.4e-35 152.9 134 59.7
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 5.8e-34 148.3 105 66.7
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.1e-29 134.0 99 63.6
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 3.3e-29 132.5 78 83.3
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 6.2e-28 128.3 81 76.5
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.0e-26 123.2 81 74.1
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 6.4e-25 118.2 101 57.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 2.4e-24 116.3 106 55.7
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.4e-19 100.5 68 64.7
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.4e-18 95.9 52 88.5
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 1.0e-17 94.4 106 50.0
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 1.5e-13 80.5 187 35.8
Ciclev10013599m.g Citrus clementina HOM05D001645 ORTHO05D001749 2.1e-07 60.1 105 34.3
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 3.9e-06 55.8 181 30.4
arahy.Tifrunner.gnm1.ann1.9J1YPX Arachis hypogaea HOM05D001645 ORTHO05D001749 5.1e-06 55.5 130 28.5
arahy.Tifrunner.gnm1.ann1.IYGA9S Arachis hypogaea HOM05D001645 ORTHO05D001749 5.1e-06 55.5 130 28.5
arahy.Tifrunner.gnm1.ann1.N6GBDS Arachis hypogaea HOM05D001645 ORTHO05D001749 5.1e-06 55.5 130 28.5
arahy.Tifrunner.gnm1.ann1.S1YA7W Arachis hypogaea HOM05D001645 ORTHO05D001749 5.1e-06 55.5 130 28.5
Potri.011G094500 Populus trichocarpa HOM05D001645 ORTHO05D001749 8.8e-06 54.7 130 28.5


User provided reference genes

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