Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 4.9e-152 541.2 290 100.0
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 9.2e-143 510.4 293 90.1
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 1.2e-142 510.0 272 94.1
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.2e-142 510.0 293 91.5
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 1.2e-142 510.0 293 91.5
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 2.7e-142 508.8 293 91.5
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.1e-140 503.4 296 90.5
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 2.5e-140 502.3 294 91.8
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.6e-139 499.6 297 90.2
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 2.1e-139 499.2 273 91.2
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 4.7e-139 498.0 273 90.8
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 6.2e-139 497.7 272 91.2
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.1e-138 496.9 292 86.0
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.1e-138 496.9 296 91.6
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.1e-138 496.9 293 89.8
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 8.9e-138 493.8 292 85.6
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 1.2e-137 493.4 273 89.0
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.2e-137 493.4 293 86.3
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 1.2e-137 493.4 273 90.5
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.2e-137 493.4 295 87.1
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 5.8e-137 491.1 293 84.0
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 7.6e-137 490.7 294 89.5
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 9.9e-137 490.3 275 90.2
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.7e-136 489.6 295 86.8
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 2.2e-136 489.2 293 85.3
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 2.2e-136 489.2 293 85.3
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 4.9e-136 488.0 273 89.4
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 6.4e-136 487.6 298 86.9
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 8.4e-136 487.3 271 89.3
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.1e-135 486.9 275 89.1
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 2.4e-135 485.7 274 89.4
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 4.2e-135 485.0 273 89.4
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 4.2e-135 485.0 273 89.4
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.2e-134 483.4 298 87.6
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.6e-134 483.0 273 88.3
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 2.1e-134 482.6 273 89.0
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.5e-134 481.9 293 83.6
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 2.3e-133 479.2 293 87.7
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 2.3e-133 479.2 293 85.0
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 3.0e-133 478.8 273 87.5
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 5.1e-133 478.0 273 87.2
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 1.1e-132 476.9 273 86.8
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.5e-132 476.5 295 87.1
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.6e-132 474.6 320 81.9
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.3e-131 473.4 293 87.4
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.6e-131 471.9 293 81.2
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 6.2e-131 471.1 293 84.3
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 8.1e-131 470.7 293 86.0
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.1e-130 470.3 293 81.6
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.4e-130 469.9 325 80.0
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 1.4e-130 469.9 274 85.0
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 3.1e-130 468.8 267 87.3
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 9.0e-130 467.2 293 81.6
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.2e-129 466.8 293 80.9
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.5e-129 466.5 274 84.3
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.5e-129 466.5 294 80.3
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 2.0e-129 466.1 292 81.2
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.4e-129 465.3 336 73.5
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 5.8e-129 464.5 293 84.0
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 7.6e-129 464.2 297 85.5
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 1.7e-128 463.0 294 85.0
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 2.2e-128 462.6 294 85.0
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 2.2e-128 462.6 294 85.0
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 3.8e-128 461.8 299 83.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 6.4e-128 461.1 294 85.7
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 2.4e-127 459.1 289 81.7
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 2.4e-127 459.1 293 82.3
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 4.2e-127 458.4 291 79.4
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 2.7e-126 455.7 291 79.0
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 3.5e-126 455.3 293 79.5
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 3.5e-126 455.3 292 80.5
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 4.6e-126 454.9 320 79.4
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 4.6e-126 454.9 299 83.3
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 6.0e-126 454.5 273 84.2
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 7.9e-126 454.1 273 81.0
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.0e-125 453.8 273 83.2
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.7e-125 453.0 273 84.2
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.7e-125 453.0 293 79.2
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 1.9e-124 449.5 293 79.5
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.9e-124 449.5 277 83.0
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 2.5e-124 449.1 277 83.0
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 1.3e-123 446.8 334 76.6
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 1.6e-123 446.4 297 79.1
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 2.1e-123 446.0 295 76.9
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 2.8e-123 445.7 312 75.0
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.1e-122 443.7 273 83.9
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.1e-122 443.7 273 83.9
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 3.1e-122 442.2 316 75.6
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 9.0e-122 440.7 301 76.4
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 9.0e-122 440.7 310 73.9
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 1.2e-121 440.3 273 81.3
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 2.6e-121 439.1 282 79.4
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 2.6e-121 439.1 330 74.2
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.6e-121 439.1 294 75.9
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 1.7e-120 436.4 273 78.8
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 2.9e-120 435.6 293 78.5
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 3.8e-120 435.3 282 80.1
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 4.9e-120 434.9 275 77.8
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.4e-119 432.6 309 72.2
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.3e-117 426.8 264 82.2
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.8e-115 418.3 264 75.4
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.4e-114 416.8 293 71.3
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 1.4e-114 416.8 300 79.0
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 3.1e-114 415.6 276 74.6
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 6.9e-114 414.5 276 74.3
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 9.0e-114 414.1 276 74.6
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 9.3e-111 404.1 222 91.9
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 1.8e-109 399.8 233 86.3
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 3.4e-105 385.6 224 86.2
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.4e-103 380.2 264 70.8
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 3.9e-101 372.1 270 71.5
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 3.1e-98 362.5 275 70.2
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.3e-96 357.1 240 76.2
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.1e-95 354.0 295 68.1
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.1e-95 354.0 295 67.5
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.9e-95 353.2 205 86.3
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 2.2e-91 339.7 232 81.0
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.4e-90 337.0 283 62.5
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 9.1e-90 334.3 239 69.0
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 2.0e-89 333.2 280 62.5
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.1e-87 327.4 281 60.9
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.9e-85 318.9 246 67.1
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 5.7e-84 315.1 293 58.0
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.2e-83 313.2 267 61.8
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 9.1e-82 307.8 206 78.6
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 1.0e-80 304.3 181 85.6
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 2.9e-80 302.8 190 81.6
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 6.1e-78 295.0 214 67.8
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 3.7e-75 285.8 260 57.3
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 8.5e-72 274.6 181 76.8
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 4.4e-68 262.3 246 62.2
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 4.1e-66 255.8 190 70.0
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.9e-63 246.9 146 84.2
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.9e-47 193.7 116 83.6
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.9e-47 193.7 116 84.5
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.8e-46 189.9 104 85.6
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 8.0e-46 188.3 116 84.5
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 1.7e-40 170.6 115 73.0
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 3.3e-39 166.4 104 77.9
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.2e-38 164.5 260 39.2
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 6.2e-38 162.2 143 68.5
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.2e-36 157.9 94 80.9
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.5e-36 157.5 98 92.9
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 3.0e-32 143.3 77 87.0
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 3.9e-32 142.9 263 34.2
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 5.1e-32 142.5 104 85.6
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 4.7e-30 136.0 217 41.5
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.8e-29 132.1 258 34.1
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 3.4e-28 129.8 248 33.5
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 2.9e-27 126.7 115 62.6
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 2.9e-27 126.7 115 62.6
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 6.4e-27 125.6 115 63.5
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 6.4e-27 125.6 66 89.4
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.1e-26 124.8 102 68.6
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 4.1e-26 122.9 115 61.7
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 4.1e-26 122.9 115 61.7
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 7.1e-26 122.1 115 61.7
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 7.8e-25 118.6 115 60.9
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 2.3e-24 117.1 115 60.0
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.2e-20 104.8 84 65.5
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 2.0e-20 104.0 152 41.4
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 3.8e-19 99.8 152 40.8
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 2.4e-18 97.1 80 66.2
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.3e-16 90.5 65 75.4
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 5.3e-13 79.3 102 45.1
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 1.2e-12 78.2 43 86.0


User provided reference genes

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