Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 1.6e-47 192.6 111 100.0
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 8.7e-25 117.1 96 60.4
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.9e-24 115.9 109 54.1
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 3.3e-24 115.2 109 52.3
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 3.3e-24 115.2 109 52.3
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 4.3e-24 114.8 109 53.2
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 4.8e-23 111.3 114 51.8
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 4.8e-23 111.3 97 56.7
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 3.1e-22 108.6 111 52.3
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 3.1e-22 108.6 65 78.5
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.5e-21 106.3 109 53.2
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.5e-21 106.3 63 76.2
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 2.0e-21 105.9 115 49.6
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 4.5e-21 104.8 65 67.7
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 5.8e-21 104.4 57 78.9
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 5.8e-21 104.4 97 51.5
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 5.8e-21 104.4 109 50.5
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 7.6e-21 104.0 57 78.9
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 7.6e-21 104.0 60 73.3
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.0e-20 103.6 109 52.3
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.7e-20 102.8 69 68.1
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 3.8e-20 101.7 53 81.1
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 3.8e-20 101.7 53 81.1
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.8e-20 101.7 53 81.1
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.8e-20 101.7 53 81.1
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.8e-20 101.7 53 81.1
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 3.8e-20 101.7 57 77.2
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 3.8e-20 101.7 113 45.1
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 8.4e-20 100.5 99 50.5
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 8.4e-20 100.5 103 52.4
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 1.1e-19 100.1 53 79.2
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.1e-19 100.1 60 68.3
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.1e-19 100.1 60 68.3
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 1.1e-19 100.1 60 68.3
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 1.1e-19 100.1 76 64.5
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 1.4e-19 99.8 69 65.2
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.4e-19 99.8 53 79.2
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 1.9e-19 99.4 97 50.5
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 2.5e-19 99.0 57 75.4
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 3.2e-19 98.6 69 63.8
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 3.2e-19 98.6 69 63.8
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 3.2e-19 98.6 64 71.9
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.2e-19 98.6 111 46.8
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 4.2e-19 98.2 65 66.2
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 5.5e-19 97.8 61 72.1
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.5e-19 97.8 119 44.5
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.5e-19 97.8 119 44.5
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 7.1e-19 97.4 61 72.1
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.2e-18 96.7 60 68.3
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.6e-18 96.3 69 62.3
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 1.6e-18 96.3 113 44.2
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 2.1e-18 95.9 111 45.9
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 2.1e-18 95.9 72 58.3
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.1e-18 95.9 47 85.1
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 7.9e-18 94.0 73 63.0
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 1.0e-17 93.6 73 61.6
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.3e-17 93.2 55 70.9
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 2.3e-17 92.4 66 65.2
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.0e-17 92.0 69 59.4
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.9e-17 91.7 65 61.5
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 3.9e-17 91.7 102 49.0
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 5.1e-17 91.3 60 65.0
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 6.7e-17 90.9 69 60.9
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 6.7e-17 90.9 60 65.0
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 8.7e-17 90.5 65 63.1
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.1e-16 90.1 59 67.8
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.5e-16 89.7 74 58.1
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.5e-16 89.7 74 58.1
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.5e-16 89.7 74 58.1
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.5e-16 89.7 74 58.1
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 1.5e-16 89.7 60 63.3
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 1.9e-16 89.4 65 61.5
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 1.9e-16 89.4 65 56.9
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 1.9e-16 89.4 57 66.7
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 1.9e-16 89.4 53 73.6
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.9e-16 89.4 72 56.9
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 3.3e-16 88.6 74 58.1
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 3.3e-16 88.6 74 58.1
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 3.3e-16 88.6 102 45.1
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.3e-16 88.2 60 65.0
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 4.3e-16 88.2 65 61.5
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 9.7e-16 87.0 73 57.5
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 1.3e-15 86.7 60 61.7
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.2e-15 85.9 52 67.3
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.2e-15 85.9 59 59.3
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 2.2e-15 85.9 59 64.4
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 2.8e-15 85.5 57 63.2
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 2.8e-15 85.5 72 51.4
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 2.8e-15 85.5 53 69.8
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 2.8e-15 85.5 56 64.3
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 3.7e-15 85.1 73 56.2
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 3.7e-15 85.1 65 55.4
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 3.7e-15 85.1 101 45.5
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 4.8e-15 84.7 55 61.8
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 6.3e-15 84.3 51 70.6
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 6.3e-15 84.3 41 85.4
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 8.2e-15 84.0 63 55.6
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.1e-14 83.6 65 53.8
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 1.4e-14 83.2 74 54.1
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 1.4e-14 83.2 53 64.2
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.8e-14 82.8 51 62.7
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 3.1e-14 82.0 74 52.7
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 3.1e-14 82.0 74 52.7
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 3.1e-14 82.0 74 52.7
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 4.1e-14 81.6 53 62.3
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 4.1e-14 81.6 57 57.9
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 4.1e-14 81.6 60 60.0
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 5.3e-14 81.3 65 50.8
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 6.9e-14 80.9 53 62.3
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 9.0e-14 80.5 57 59.6
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.0e-14 80.5 60 53.3
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.2e-13 80.1 53 67.9
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.2e-13 80.1 113 38.1
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.2e-13 80.1 113 38.1
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 1.2e-13 80.1 59 61.0
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 1.5e-13 79.7 51 62.7
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 2.0e-13 79.3 60 55.0
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 4.5e-13 78.2 47 70.2
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 4.5e-13 78.2 47 68.1
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 5.9e-13 77.8 47 72.3
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 7.6e-13 77.4 57 54.4
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 1.0e-12 77.0 48 68.8
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.7e-12 76.3 59 54.2
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.7e-12 76.3 67 49.3
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.8e-12 75.1 53 58.5
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 3.8e-12 75.1 48 60.4
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 5.0e-12 74.7 53 58.5
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.0e-12 74.7 50 56.0
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.5e-12 74.3 57 54.4
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 8.5e-12 73.9 51 56.9
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 4.2e-11 71.6 61 52.5
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 4.2e-11 71.6 45 64.4
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.4e-11 70.5 41 65.9
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.2e-10 70.1 48 58.3
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.1e-10 69.3 41 65.9
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 4.6e-10 68.2 47 59.6
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 6.1e-10 67.8 50 58.0
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.0e-09 65.5 41 58.5
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 3.9e-09 65.1 54 46.3
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 8.8e-09 63.9 51 54.9
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.5e-08 63.2 48 60.4
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.5e-08 63.2 42 61.9
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 2.5e-08 62.4 49 51.0
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 5.7e-08 61.2 63 44.4
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 5.7e-08 61.2 69 46.4
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 1.3e-07 60.1 51 51.0
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.7e-07 59.7 55 52.7
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 3.7e-07 58.5 50 54.0
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.7e-07 58.5 49 53.1
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 6.3e-07 57.8 54 42.6
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.2e-07 57.4 36 58.3
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 4.1e-06 55.1 57 47.4


User provided reference genes

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