Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 2390.9 1201 100.0
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 2160.6 1201 88.5
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 2029.6 1199 82.2
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1999.9 1215 80.1
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1997.6 1199 81.9
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1996.9 1199 81.4
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1994.9 1199 81.6
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1994.5 1199 81.6
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1991.5 1199 80.6
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1984.5 1192 80.7
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1976.1 1226 79.1
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1973.7 1199 79.8
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1919.4 1194 78.7
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1767.7 1204 71.3
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1759.2 1170 72.5
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1759.2 1194 71.0
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1746.1 1193 71.3
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1721.4 1196 69.7
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1719.1 1194 69.3
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1715.7 1196 69.4
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1711.8 1191 69.8
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1706.0 1195 69.4
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1699.9 1191 68.4
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1699.9 1199 69.3
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1696.4 1190 69.1
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1694.9 1192 69.0
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1694.1 1190 69.1
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1690.6 1194 68.8
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1683.3 1199 68.3
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1681.8 1199 68.4
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1681.8 1190 68.5
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1680.2 1196 68.4
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1677.9 1194 67.7
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1669.4 1184 68.6
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1666.4 1231 67.0
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1661.0 1195 67.4
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1658.7 1197 68.1
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1643.6 1192 66.8
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1640.2 1194 67.1
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1637.1 1202 66.9
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1636.7 1185 67.0
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1627.5 1193 66.5
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1615.1 1193 65.9
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1599.7 1178 65.4
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1598.2 1192 65.4
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1591.2 1198 64.8
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1585.9 1310 60.9
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1585.5 1197 64.7
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1583.5 1203 64.4
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1578.5 1190 65.1
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1577.8 1194 63.8
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1575.5 1208 64.3
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1570.1 1212 63.4
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1569.7 1194 63.7
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1568.9 1195 63.4
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1568.9 1191 64.5
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1567.7 1193 63.7
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1566.6 1204 63.0
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1565.4 1195 63.6
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1563.1 1195 63.3
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1560.0 1195 65.0
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1556.2 1205 62.6
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1555.4 1220 62.2
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1553.5 1192 64.3
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1552.0 1179 63.1
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1550.8 1203 62.8
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1546.9 1184 63.5
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1542.3 1196 62.7
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1537.7 1130 65.9
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1535.8 1183 62.2
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1532.3 1205 62.1
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1530.4 1207 61.7
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1526.1 1205 61.7
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1525.8 1204 62.9
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1525.0 1195 63.4
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1523.5 1207 62.1
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1518.8 1249 60.0
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1517.3 1195 63.3
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1515.0 1197 62.5
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1505.0 1184 62.1
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1502.6 1015 72.1
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1501.9 1158 63.6
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1497.6 1196 61.6
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1494.9 1204 61.9
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1491.9 1272 59.2
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1491.1 1154 63.3
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1474.5 1249 58.8
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1460.7 1178 60.9
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1427.2 1191 58.3
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1426.0 1249 57.2
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1405.6 1273 56.2
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1384.0 1192 56.0
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1366.7 1016 66.2
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1358.2 1195 56.2
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1354.0 1191 56.2
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1327.0 969 67.1
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1314.7 1194 57.5
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1261.1 986 63.4
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1246.9 1198 55.3
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1241.5 1194 54.4
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1200.3 1218 52.3
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1142.5 1201 48.0
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1141.7 1218 49.8
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1139.8 1202 48.0
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1135.9 831 66.5
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1090.5 1175 47.1
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.4e-306 1055.8 855 62.8
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 2.5e-287 992.6 762 63.1
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 2.2e-286 989.6 711 66.9
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.8e-262 909.4 717 62.8
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 6.3e-246 855.1 1070 43.4
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 1.3e-238 830.9 1103 41.2
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 1.1e-221 774.6 582 64.8
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 3.9e-211 739.6 1171 39.5
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 8.4e-198 695.3 559 63.5
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 2.1e-196 690.6 484 68.4
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 7.1e-189 665.6 754 49.1
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.5e-186 657.1 495 65.7
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.7e-150 538.1 400 66.8
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 4.4e-138 496.9 592 47.1
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 2.7e-132 477.6 411 57.9
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 2.2e-113 414.8 716 37.2
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 9.2e-96 356.3 259 66.4
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 4.0e-91 340.9 375 47.5
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 4.3e-77 294.3 224 68.8
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 1.1e-75 289.7 274 55.1
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 2.4e-59 235.3 246 53.7
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 1.7e-57 229.2 175 61.7
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.4e-56 226.1 286 41.3
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 4.8e-52 211.1 294 39.5
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 5.7e-45 187.6 140 64.3
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 1.3e-33 149.8 161 53.4
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 6.7e-30 137.5 167 46.7
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 5.0e-25 121.3 71 78.9
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 6.8e-14 84.3 60 70.0
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 1.7e-12 79.7 201 29.9
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 2.2e-12 79.3 101 44.6
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 4.1e-11 75.1 313 22.0
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.6e-10 73.2 105 41.0
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 6.6e-09 67.8 51 64.7
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 4.3e-08 65.1 93 41.9
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 2.3e-06 59.3 64 48.4


User provided reference genes

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