Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 0.0e+00 1455.7 716 100.0
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 0.0e+00 1216.1 712 83.7
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 0.0e+00 1212.2 711 83.8
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 0.0e+00 1209.1 711 83.7
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 0.0e+00 1203.3 719 82.1
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 0.0e+00 1201.0 711 82.3
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 0.0e+00 1194.1 719 81.4
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 0.0e+00 1166.0 711 81.3
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1096.6 719 73.9
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1095.1 719 73.6
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 0.0e+00 1092.8 719 74.5
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 0.0e+00 1092.8 720 73.8
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 0.0e+00 1088.9 719 72.9
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 0.0e+00 1082.0 719 73.9
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 0.0e+00 1081.6 722 73.0
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 0.0e+00 1080.9 711 73.3
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 0.0e+00 1078.9 722 72.7
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 4.9e-312 1074.3 720 72.2
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.5e-311 1072.4 721 72.0
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 5.9e-311 1070.5 725 71.6
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 2.8e-310 1068.1 707 72.7
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 1.6e-308 1062.4 726 70.2
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 3.5e-308 1061.2 647 80.2
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 4.5e-308 1060.8 726 71.1
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 1.3e-307 1059.3 719 71.9
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 2.2e-307 1058.5 719 71.9
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.3e-304 1048.5 718 70.3
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 2.3e-304 1048.5 719 70.5
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 3.4e-303 1044.6 719 70.2
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 5.7e-303 1043.9 727 70.2
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 4.1e-301 1037.7 719 69.8
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.5e-298 1029.2 719 70.7
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 1.4e-296 1022.7 730 68.6
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 2.0e-295 1018.8 722 67.9
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.8e-293 1012.3 722 67.5
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 3.2e-293 1011.5 722 66.8
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 5.9e-292 1007.3 722 67.2
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 1.3e-291 1006.1 726 67.5
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 5.0e-291 1004.2 722 66.9
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 8.6e-291 1003.4 716 67.2
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 3.3e-290 1001.5 716 66.6
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 1.2e-289 999.6 725 68.8
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 1.8e-288 995.7 562 86.1
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 2.0e-287 992.3 717 66.5
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 2.0e-287 992.3 663 73.3
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 7.5e-287 990.3 721 67.8
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 2.9e-286 988.4 711 67.1
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.9e-285 985.7 631 74.3
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 3.2e-285 984.9 724 66.3
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 1.2e-284 983.0 716 66.3
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 3.5e-284 981.5 724 65.7
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 6.0e-284 980.7 718 65.0
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 6.0e-284 980.7 723 66.8
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 1.7e-283 979.2 697 66.3
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 9.5e-282 973.4 721 67.0
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 4.7e-281 971.1 722 64.8
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 6.2e-281 970.7 719 65.4
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 1.1e-280 969.9 716 66.3
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 1.8e-280 969.1 722 65.0
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 2.3e-280 968.8 728 66.9
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 3.1e-280 968.4 725 66.2
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 5.2e-280 967.6 719 64.7
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 1.2e-279 966.5 719 64.8
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 2.0e-279 965.7 722 64.5
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 2.6e-279 965.3 722 64.7
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 5.8e-279 964.1 722 64.7
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 2.2e-278 962.2 735 64.2
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 3.7e-278 961.4 722 64.7
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 2.4e-277 958.7 719 64.5
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 2.1e-276 955.7 708 66.9
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 1.0e-275 953.4 666 69.2
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.7e-275 952.6 719 65.5
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 8.6e-275 950.3 718 63.2
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 1.5e-274 949.5 709 67.0
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 3.3e-274 948.3 719 64.4
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 4.7e-273 944.5 728 63.7
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 8.1e-273 943.7 734 62.8
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 2.3e-272 942.2 727 63.8
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.3e-267 926.4 725 62.6
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.3e-267 925.6 654 69.0
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 2.5e-266 922.2 728 63.9
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 1.2e-263 913.3 735 60.1
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 6.4e-262 907.5 628 70.4
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.9e-261 906.0 716 64.5
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 3.2e-261 905.2 625 70.1
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 3.2e-261 905.2 988 51.0
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.0e-259 900.2 589 71.8
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 9.6e-258 893.6 718 62.3
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 4.0e-256 888.3 542 77.5
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 4.0e-256 888.3 731 59.0
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 9.0e-256 887.1 724 60.1
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 9.6e-250 867.1 585 71.3
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 6.9e-240 834.3 871 51.0
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 8.4e-238 827.4 723 58.5
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 2.8e-225 785.8 982 47.5
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 3.2e-213 745.7 697 55.8
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 7.7e-199 698.0 453 74.4
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 2.6e-186 656.4 747 45.8
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 1.9e-181 640.2 483 64.6
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 5.6e-181 638.6 364 84.1
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 1.1e-165 587.8 700 43.9
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 1.2e-156 557.8 641 45.6
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.2e-136 490.0 441 56.5
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 6.9e-131 472.2 381 61.2
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 5.5e-128 462.6 279 80.3
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 2.8e-100 370.5 267 70.0
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 4.2e-96 356.7 252 68.3
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 9.4e-96 355.5 226 76.1
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 2.4e-83 314.3 291 56.0
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 2.3e-65 254.6 167 74.9
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 2.3e-65 254.6 268 48.9
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 8.3e-60 236.1 150 69.3
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.7e-49 201.8 278 43.2
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 3.3e-48 197.6 154 68.8
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 2.2e-44 184.9 278 40.6
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 8.3e-44 183.0 229 45.0
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 7.8e-34 149.8 155 47.7
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 1.9e-32 145.2 98 78.6
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 4.3e-32 144.1 117 67.5
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.6e-31 142.1 115 68.7
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 8.1e-31 139.8 107 67.3
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 9.9e-29 132.9 112 56.2
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-28 131.7 169 39.6
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.8e-28 131.0 98 63.3
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 2.1e-26 125.2 132 53.8
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 4.6e-26 124.0 104 69.2
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 9.6e-24 116.3 74 67.6
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 4.8e-23 114.0 109 52.3
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 3.8e-20 104.4 109 49.5
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.1e-19 102.8 109 48.6
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.1e-19 102.8 64 71.9
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 5.4e-19 100.5 69 65.2
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 2.7e-18 98.2 61 72.1
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 3.5e-18 97.8 75 69.3
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.5e-16 92.4 85 55.3
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.6e-15 89.0 106 50.9
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 2.8e-15 88.2 164 31.7
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 3.7e-15 87.8 77 61.0
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 6.2e-15 87.0 624 22.4
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 8.1e-15 86.7 98 51.0
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 3.1e-14 84.7 129 38.8
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 4.0e-14 84.3 58 65.5
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 1.3e-12 79.3 57 64.9
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-12 79.0 108 41.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 3.8e-12 77.8 57 64.9
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 3.8e-12 77.8 57 64.9
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 3.8e-12 77.8 52 63.5
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.8e-12 77.8 53 66.0
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 3.2e-11 74.7 104 51.0
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 7.1e-11 73.6 57 61.4
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 2.7e-10 71.6 53 64.2
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 9.6e-08 63.2 42 66.7
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 1.4e-06 59.3 33 75.8
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 4.0e-06 57.8 42 57.1


User provided reference genes

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