Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 0.0e+00 1133.2 592 100.0
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 5.7e-216 754.6 597 72.2
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 5.8e-184 648.3 615 61.6
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 3.9e-180 635.6 628 60.2
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 2.8e-170 602.8 617 60.0
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 1.8e-169 600.1 615 59.8
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 6.9e-169 598.2 619 58.8
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 1.9e-166 590.1 619 58.2
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 1.6e-165 587.0 623 57.3
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 4.2e-158 562.4 486 65.0
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 6.5e-151 538.5 616 56.0
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 1.3e-143 514.2 650 52.2
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 2.3e-84 317.4 650 40.8
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 5.2e-84 316.2 666 37.1
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 4.4e-83 313.2 657 37.9
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.9e-81 307.8 624 39.3
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 1.7e-79 301.2 634 38.2
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 5.1e-79 299.7 615 36.9
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 6.6e-79 299.3 613 36.9
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.8e-76 291.2 610 37.0
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 2.3e-76 290.8 641 37.0
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 9.2e-73 278.9 405 45.4
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 1.2e-72 278.5 528 40.3
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.9e-70 271.2 637 36.3
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 3.6e-69 266.9 617 35.2
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 8.1e-69 265.8 537 38.7
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 2.4e-68 264.2 614 37.0
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 3.1e-68 263.8 652 36.8
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 3.1e-68 263.8 638 35.7
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 8.9e-68 262.3 625 36.2
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 3.4e-67 260.4 636 37.4
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 6.4e-66 256.1 639 35.8
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 1.2e-64 251.9 622 34.9
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.2e-64 251.9 634 36.6
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 1.6e-64 251.5 375 43.5
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 2.1e-64 251.1 700 33.4
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.7e-64 250.8 581 37.5
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 3.5e-64 250.4 652 35.4
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 4.6e-64 250.0 625 36.3
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 7.8e-64 249.2 636 34.6
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.3e-63 248.4 578 37.5
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 3.9e-63 246.9 626 34.5
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 8.7e-63 245.7 617 34.8
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.5e-62 245.0 586 36.2
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 1.9e-62 244.6 462 39.4
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 7.3e-62 242.7 625 34.6
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 7.3e-62 242.7 676 34.0
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.8e-61 240.7 613 34.9
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 8.1e-61 239.2 668 34.0
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 2.4e-60 237.7 716 33.9
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 3.2e-57 227.3 520 36.5
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 6.0e-56 223.0 626 33.2
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 3.0e-55 220.7 495 34.5
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 1.3e-50 205.3 366 40.7
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 4.9e-50 203.4 320 43.1
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 1.2e-48 198.7 556 34.9
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 2.7e-48 197.6 607 33.3
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 4.6e-48 196.8 612 34.0
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 4.3e-46 190.3 602 32.9
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.4e-44 185.3 312 41.7
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 1.8e-44 184.9 310 42.6
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 6.9e-44 183.0 317 40.7
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 7.6e-43 179.5 505 34.1
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 1.3e-42 178.7 409 37.2
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 2.2e-42 177.9 302 41.1
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 4.9e-42 176.8 611 31.1
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 6.5e-42 176.4 805 27.5
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 8.4e-42 176.0 313 41.5
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 8.4e-42 176.0 313 41.5
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 1.1e-41 175.6 302 40.7
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 1.4e-41 175.3 315 42.2
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 5.5e-41 173.3 304 40.5
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 5.5e-41 173.3 498 32.7
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 5.5e-41 173.3 333 39.0
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 7.1e-41 172.9 519 32.4
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 1.2e-40 172.2 395 37.5
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.2e-40 172.2 633 31.0
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 2.1e-40 171.4 315 41.3
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 3.5e-40 170.6 434 34.1
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 3.5e-40 170.6 641 31.0
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 7.9e-40 169.5 356 37.1
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 1.0e-39 169.1 313 39.9
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.8e-39 168.3 396 36.6
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 3.0e-39 167.5 494 32.6
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 6.7e-39 166.4 346 36.7
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 1.1e-38 165.6 507 31.6
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 1.9e-38 164.9 501 33.9
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 1.9e-38 164.9 476 33.0
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 2.5e-38 164.5 492 32.3
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 2.5e-38 164.5 492 32.3
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 4.3e-38 163.7 346 36.4
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 1.3e-37 162.2 361 37.7
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 2.8e-37 161.0 408 35.0
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 6.3e-37 159.8 108 68.5
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.8e-36 158.3 320 38.8
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 2.0e-35 154.8 499 31.7
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 3.4e-35 154.1 307 37.1
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 5.0e-34 150.2 399 34.1
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 1.9e-33 148.3 484 31.0
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 1.6e-32 145.2 89 77.5
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 2.7e-32 144.4 628 28.3
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 7.9e-32 142.9 349 35.5
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 1.0e-31 142.5 638 31.0
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 1.0e-31 142.5 221 41.6
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 5.1e-31 140.2 317 35.6
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 5.1e-31 140.2 659 29.4
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 3.1e-28 131.0 312 34.9
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 5.3e-28 130.2 378 32.0
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 9.0e-28 129.4 215 40.5
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.2e-27 129.0 646 30.3
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 1.5e-27 128.6 250 34.8
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 5.9e-27 126.7 637 30.6
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 3.8e-26 124.0 594 29.1
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 3.9e-23 114.0 362 30.9
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 3.9e-23 114.0 482 27.6
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 1.1e-22 112.5 239 35.6
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.8e-21 107.8 284 33.1
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 8.2e-21 106.3 371 30.5
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 5.3e-20 103.6 186 41.9
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 5.3e-20 103.6 523 27.2
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 2.6e-19 101.3 291 31.6
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 1.4e-17 95.5 207 36.7
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 1.9e-17 95.1 449 30.3
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 2.0e-14 85.1 326 31.6
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 3.3e-14 84.3 262 29.0
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 5.7e-14 83.6 209 35.4
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 7.4e-14 83.2 384 26.6
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 6.3e-13 80.1 154 40.3
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 4.5e-11 73.9 427 25.8
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 1.7e-10 72.0 73 58.9
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 1.5e-09 68.9 110 39.1
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 1.9e-09 68.6 313 26.8
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 2.5e-09 68.2 369 26.3
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 5.5e-09 67.0 234 30.3
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 2.1e-08 65.1 224 26.3
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 1.8e-07 62.0 242 28.9
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 4.0e-07 60.8 271 26.2
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 2.0e-06 58.5 262 30.2
Nitab4.5_0000687g0150 Nicotiana tabacum HOM05D003044 ORTHO05D001869 2.0e-06 58.5 240 29.6
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 2.6e-06 58.2 243 28.8
SGA_v2.0_scaffold121G33034 Striga asiatica HOM05D005642 ORTHO05D006672 2.6e-06 58.2 199 29.1
Nitab4.5_0005247g0010 Nicotiana tabacum HOM05D003044 ORTHO05D001869 3.3e-06 57.8 238 29.0
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 3.3e-06 57.8 243 28.8
Haze_03430 Corylus avellana HOM05D003044 ORTHO05D001869 9.7e-06 56.2 259 29.0


User provided reference genes

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