Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr11g0061641 Lupinus albus HOM05D006705 ORTHO05D008179 8.1e-158 561.6 297 100.0
Ca_15434_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 4.1e-117 426.4 312 74.7
Ca_15459_v3 Cicer arietinum L. HOM05D006705 ORTHO05D008179 4.1e-117 426.4 312 74.7
Glyma.06G018300 Glycine max HOM05D006705 ORTHO05D008179 1.0e-115 421.8 318 71.7
Glyma.04G018000 Glycine max HOM05D006705 ORTHO05D008179 4.2e-114 416.4 306 73.2
Psat5g159080 Pisum sativum HOM05D006705 ORTHO05D008179 7.2e-114 415.6 271 78.6
Medtr3g115270 Medicago truncatula HOM05D006705 ORTHO05D008179 9.7e-111 405.2 292 74.3
Phvul.009G010700 Phaseolus vulgaris HOM05D006705 ORTHO05D008179 2.4e-109 400.6 297 73.1
arahy.Tifrunner.gnm1.ann1.1DQJ64 Arachis hypogaea HOM05D006705 ORTHO05D008179 7.0e-109 399.1 289 72.0
VMungo1309G2580 Vigna mungo HOM05D006705 ORTHO05D008179 1.7e-107 394.4 297 70.7
arahy.Tifrunner.gnm1.ann1.A2XG10 Arachis hypogaea HOM05D006705 ORTHO05D008179 8.5e-107 392.1 289 71.6
ClCG08G009460 Citrullus lanatus HOM05D006705 ORTHO05D008179 6.8e-104 382.5 313 66.1
CsaV3_6G031600 Cucumis sativus L. HOM05D006705 ORTHO05D008179 7.5e-103 379.0 275 72.4
MELO3C026541.2 Cucumis melo HOM05D006705 ORTHO05D008179 4.8e-102 376.3 275 71.6
Cfa014075 Carpinus fangiana HOM05D006705 ORTHO05D008179 6.3e-102 375.9 328 63.4
Cpa.g.sc26.199 Carica papaya HOM05D006705 ORTHO05D008179 1.8e-101 374.4 274 70.4
Sed0011006 Sechium edule HOM05D006705 ORTHO05D008179 5.3e-101 372.9 269 70.3
Haze_22772 Corylus avellana HOM05D006705 ORTHO05D008179 1.6e-100 371.3 328 64.0
TPR.G38137 Trifolium pratense HOM05D006705 ORTHO05D008179 3.5e-100 370.2 250 75.6
Lj1g0004605 Lotus japonicus HOM05D006705 ORTHO05D008179 7.7e-100 369.0 291 67.7
Dinv05535 Davidia involucrata HOM05D006705 ORTHO05D008179 3.2e-98 363.6 309 64.4
Manes.05G134500 Manihot esculenta HOM05D006705 ORTHO05D008179 4.2e-98 363.2 256 72.3
CANSAT25G1831 Cannabis sativa HOM05D006705 ORTHO05D008179 1.6e-97 361.3 259 70.7
CSS0004504 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 2.1e-97 360.9 257 71.6
CSS0019684 Camellia sinensis var. sinensis HOM05D006705 ORTHO05D008179 2.1e-97 360.9 257 71.6
RcHm_v2.0_Chr6g0304261 Rosa chinensis HOM05D006705 ORTHO05D008179 2.1e-97 360.9 249 73.5
Nn5g30939 Nelumbo nucifera HOM05D006705 ORTHO05D008179 2.7e-97 360.5 272 68.8
Ciclev10000451m.g Citrus clementina HOM05D006705 ORTHO05D008179 3.6e-97 360.1 256 71.5
Gohir.D01G092000 Gossypium hirsutum HOM05D006705 ORTHO05D008179 4.7e-97 359.8 261 72.0
TAR376G0550 Trochodendron aralioides HOM05D006705 ORTHO05D008179 8.0e-97 359.0 267 68.9
Gorai.002G117100 Gossypium raimondii HOM05D006705 ORTHO05D008179 1.4e-96 358.2 260 71.5
Thecc.08G058800 Theobroma cacao HOM05D006705 ORTHO05D008179 1.8e-96 357.8 261 70.5
QL02p014030 Quercus lobata HOM05D006705 ORTHO05D008179 2.3e-96 357.5 254 74.0
COL.COLO4_06661 Corchorus olitorius HOM05D006705 ORTHO05D008179 8.8e-96 355.5 261 71.3
Actinidia15490 Actinidia chinensis HOM05D006705 ORTHO05D008179 1.2e-95 355.1 259 69.9
Hma1.2p1_0507F.1_g168450 Hydrangea macrophylla HOM05D006705 ORTHO05D008179 2.0e-95 354.4 260 68.8
Gohir.A01G105700 Gossypium hirsutum HOM05D006705 ORTHO05D008179 1.7e-94 351.3 260 70.4
THA.LOC104825423 Tarenaya hassleriana HOM05D006705 ORTHO05D008179 2.8e-94 350.5 251 71.7
FAN27G0286 Fragaria x ananassa HOM05D006705 ORTHO05D008179 3.7e-94 350.1 252 70.2
Lsat_1_v5_gn_9_45140 Lactuca sativa HOM05D006705 ORTHO05D008179 5.4e-93 346.3 247 70.4
Aqoxy5G01043 Aquilegia oxysepala HOM05D006705 ORTHO05D008179 1.3e-91 341.7 308 62.0
GSVIVG01013362001 Vitis vinifera HOM05D006705 ORTHO05D008179 1.3e-91 341.7 250 68.8
Atru.chr13.134 Acer truncatum HOM05D006705 ORTHO05D008179 1.7e-91 341.3 249 69.9
Prupe.1G354600 Prunus persica HOM05D006705 ORTHO05D008179 2.3e-91 340.9 238 74.4
Potri.005G250200 Populus trichocarpa HOM05D006705 ORTHO05D008179 2.9e-91 340.5 262 66.8
Sabra05G0193800 Salix brachista HOM05D006705 ORTHO05D008179 2.9e-91 340.5 264 66.7
FvH4_2g37460 Fragaria vesca HOM05D006705 ORTHO05D008179 3.8e-91 340.1 239 72.0
DCAR_013913 Daucus carota HOM05D006705 ORTHO05D008179 5.0e-91 339.7 301 61.5
Oeu007482.1 Olea europaea HOM05D006705 ORTHO05D008179 6.6e-91 339.3 258 64.7
Aa31LG9G12430 Aethionema arabicum HOM05D006705 ORTHO05D008179 1.1e-90 338.6 251 69.3
PSO170G2138 Papaver somniferum HOM05D006705 ORTHO05D008179 2.5e-90 337.4 259 66.4
MD12G1003200 Malus domestica HOM05D006705 ORTHO05D008179 3.3e-90 337.0 264 67.4
Rhsim06G0007500 Rhododendron simsii HOM05D006705 ORTHO05D008179 3.3e-90 337.0 312 58.7
CARHR284920 Cardamine hirsuta HOM05D006705 ORTHO05D008179 4.2e-90 336.7 257 69.3
FAN15G2229 Fragaria x ananassa HOM05D006705 ORTHO05D008179 5.5e-90 336.3 242 70.7
Nitab4.5_0000337g0230 Nicotiana tabacum HOM05D006705 ORTHO05D008179 5.5e-90 336.3 253 66.4
CiPaw.08G072900 Carya illinoinensis HOM05D006705 ORTHO05D008179 9.5e-90 335.5 301 62.5
Nitab4.5_0025577g0010 Nicotiana tabacum HOM05D006705 ORTHO05D008179 9.5e-90 335.5 307 57.3
PSO210G3824 Papaver somniferum HOM05D006705 ORTHO05D008179 3.6e-89 333.6 259 65.6
CAN.G985.2 Capsicum annuum HOM05D006705 ORTHO05D008179 6.1e-89 332.8 257 66.5
PGSC0003DMG400011663 Solanum tuberosum HOM05D006705 ORTHO05D008179 6.1e-89 332.8 247 68.4
vmacro21812 Vaccinium macrocarpon HOM05D006705 ORTHO05D008179 8.0e-89 332.4 305 58.4
Cc10_g00680 Coffea canephora HOM05D006705 ORTHO05D008179 1.4e-88 331.6 257 67.7
Migut.C00960 Erythranthe guttata HOM05D006705 ORTHO05D008179 6.8e-88 329.3 258 64.3
AUR62043173 Chenopodium quinoa HOM05D006705 ORTHO05D008179 2.0e-87 327.8 306 57.5
AUR62036875 Chenopodium quinoa HOM05D006705 ORTHO05D008179 7.5e-87 325.9 266 63.2
MSTRG.1107 Avicennia marina HOM05D006705 ORTHO05D008179 1.3e-86 325.1 257 63.8
Peaxi162Scf00400g00113 Petunia axillaris HOM05D006705 ORTHO05D008179 2.8e-86 323.9 252 65.9
SalBow7G0522 Salvia bowleyana HOM05D006705 ORTHO05D008179 1.1e-85 322.0 254 63.8
Hund05113 Selenicereus undatus HOM05D006705 ORTHO05D008179 1.8e-85 321.2 252 65.5
Thhalv10027665m.g Eutrema salsugineum HOM05D006705 ORTHO05D008179 3.2e-85 320.5 234 69.7
A03p65890 Brassica napus HOM05D006705 ORTHO05D008179 9.2e-85 318.9 242 67.4
BraA03t15643Z Brassica rapa HOM05D006705 ORTHO05D008179 9.2e-85 318.9 242 67.4
PGR031G2749 Punica granatum HOM05D006705 ORTHO05D008179 9.2e-85 318.9 331 57.1
AL8G19290 Arabidopsis lyrata HOM05D006705 ORTHO05D008179 1.6e-84 318.2 247 65.6
HanXRQChr05g0146791 Helianthus annuus HOM05D006705 ORTHO05D008179 1.6e-84 318.2 243 68.7
BcaC06g31759 Brassica carinata HOM05D006705 ORTHO05D008179 2.0e-84 317.8 236 69.1
Sabra02G0008200 Salix brachista HOM05D006705 ORTHO05D008179 2.7e-84 317.4 256 63.7
Potri.002G010900 Populus trichocarpa HOM05D006705 ORTHO05D008179 2.9e-83 313.9 238 68.9
Sp7g08260 Schrenkiella parvula HOM05D006705 ORTHO05D008179 2.9e-83 313.9 231 68.8
Carub.0008s0687 Capsella rubella HOM05D006705 ORTHO05D008179 5.0e-83 313.2 233 68.2
AT5G42310 Arabidopsis thaliana HOM05D006705 ORTHO05D008179 6.6e-83 312.8 240 66.7
BcaC02g10761 Brassica carinata HOM05D006705 ORTHO05D008179 6.6e-83 312.8 234 68.8
C04p25410 Brassica napus HOM05D006705 ORTHO05D008179 6.6e-83 312.8 234 68.8
BolC4t24049H Brassica oleracea HOM05D006705 ORTHO05D008179 6.6e-83 312.8 234 68.8
MD15G1002100 Malus domestica HOM05D006705 ORTHO05D008179 4.3e-82 310.1 238 68.9
CDE02G1751 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 5.6e-82 309.7 239 65.3
Solyc08g045850.3 Solanum lycopersicum HOM05D006705 ORTHO05D008179 5.6e-82 309.7 239 66.1
Sopen08g014170 Solanum pennellii HOM05D006705 ORTHO05D008179 7.3e-82 309.3 239 66.1
Lsat_1_v5_gn_8_26180 Lactuca sativa HOM05D006705 ORTHO05D008179 1.6e-81 308.1 297 56.6
ECA232G0132 Erigeron canadensis HOM05D006705 ORTHO05D008179 3.6e-81 307.0 250 62.0
HanXRQChr12g0367581 Helianthus annuus HOM05D006705 ORTHO05D008179 4.0e-80 303.5 300 55.7
EL10Ac1g01967 Beta vulgaris HOM05D006705 ORTHO05D008179 4.4e-79 300.1 284 58.1
SGA_v2.0_scaffold108G30860 Striga asiatica HOM05D006705 ORTHO05D008179 2.9e-78 297.4 241 64.3
Sc15g0004450 Simmondsia chinensis HOM05D006705 ORTHO05D008179 1.0e-75 288.9 305 54.8
ECA233G5787 Erigeron canadensis HOM05D006705 ORTHO05D008179 1.6e-73 281.6 314 51.3
CDE04G2934 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 8.0e-73 279.3 285 53.7
Ah.11g041180 Amaranthus hybridus HOM05D006705 ORTHO05D008179 6.8e-72 276.2 248 60.1
Lj4A11G70 Lonicera japonica HOM05D006705 ORTHO05D008179 3.5e-68 263.8 174 76.4
Eucgr.F03553 Eucalyptus grandis HOM05D006705 ORTHO05D008179 3.3e-58 230.7 169 71.6
FAN20G2687 Fragaria x ananassa HOM05D000148 ORTHO05D008179 1.1e-53 215.7 168 61.9
MBI08_g41522_MAGBIO Magnolia biondii HOM05D006705 ORTHO05D008179 2.8e-49 201.1 256 49.2
HPP92_000875 Vanilla planifolia HOM05D006705 ORTHO05D008179 5.3e-48 196.8 264 44.7
ATR0661G389 Amborella trichopoda HOM05D006705 ORTHO05D008179 4.9e-38 163.7 214 42.5
SEGI_04333 Sequoiadendron giganteum HOM05D006705 ORTHO05D000002 3.1e-32 144.4 184 45.7
Zm00001eb323580 Zea mays HOM05D006705 ORTHO05D008179 5.3e-32 143.7 264 36.0
Mapoly0048s0090 Marchantia polymorpha HOM05D006705 ORTHO05D008179 6.9e-32 143.3 221 37.1
Os07g0548300 Oryza sativa ssp. japonica HOM05D006705 ORTHO05D008179 3.2e-29 134.4 254 37.4
SMO180G0012 Selaginella moellendorffii HOM05D006705 ORTHO05D008179 1.7e-22 112.1 172 36.0
AagrBONN_evm.TU.Sc2ySwM_362.1316 Anthoceros agrestis HOM05D006705 ORTHO05D008179 4.2e-21 107.5 171 31.0
FvH4_5g30181 Fragaria vesca HOM05D006705 ORTHO05D008179 1.0e-19 102.8 91 59.3
Gohir.D06G036701 Gossypium hirsutum HOM05D006705 ORTHO05D008179 5.9e-15 87.0 47 87.2
Gorai.010G041000 Gossypium raimondii HOM05D006705 ORTHO05D008179 5.9e-15 87.0 47 87.2
Nitab4.5_0002710g0130 Nicotiana tabacum HOM05D006705 ORTHO05D008179 3.2e-13 81.3 45 84.4
Eucgr.F03554 Eucalyptus grandis HOM05D006705 ORTHO05D008179 1.2e-12 79.3 45 82.2
Gohir.D05G336850 Gossypium hirsutum HOM05D006705 ORTHO05D008179 2.1e-12 78.6 55 72.7
CDE02G4098 Ceratophyllum demersum HOM05D006705 ORTHO05D008179 8.8e-11 73.2 43 76.7
Pp3c11_21930 Physcomitrium patens HOM05D006705 ORTHO05D008179 8.8e-11 73.2 232 25.9
BcaNung05253 Brassica carinata HOM05D006705 ORTHO05D008179 2.8e-09 68.2 46 67.4
Gohir.D06G157800 Gossypium hirsutum HOM05D000485 ORTHO05D000341 1.2e-07 62.8 37 78.4
unitig_62.g23524 Utricularia gibba HOM05D000001 ORTHO05D010004 5.9e-07 60.5 163 27.0
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 1.7e-06 58.9 94 31.9
AUR62038945 Chenopodium quinoa HOM05D002479 ORTHO05D002675 1.7e-06 58.9 94 31.9
CiPaw.15G089800 Carya illinoinensis HOM05D000001 ORTHO05D000003 2.9e-06 58.2 174 20.7
CiPaw.05G156900 Carya illinoinensis HOM05D000001 ORTHO05D000003 3.8e-06 57.8 174 20.7
QL03p001061 Quercus lobata HOM05D000001 ORTHO05D000003 3.8e-06 57.8 169 27.2
Thecc.05G207800 Theobroma cacao HOM05D007456 ORTHO05D009411 3.8e-06 57.8 127 35.4
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 6.5e-06 57.0 104 30.8
Lj7C720G6 Lonicera japonica HOM05D000001 ORTHO05D000003 6.5e-06 57.0 135 29.6
GSVIVG01026178001 Vitis vinifera HOM05D007202 ORTHO05D009125 6.5e-06 57.0 222 22.5
Nitab4.5_0003968g0010 Nicotiana tabacum HOM05D006707 ORTHO05D008243 8.5e-06 56.6 128 28.1


User provided reference genes

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