Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 2.6e-197 691.8 335 100.0
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.3e-196 689.5 333 100.0
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 4.1e-142 508.4 335 75.8
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.4e-139 500.0 329 75.1
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 3.0e-137 492.3 345 72.8
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 2.5e-136 489.2 343 72.3
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 2.5e-136 489.2 300 79.3
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 7.4e-136 487.6 301 79.1
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 1.1e-123 447.2 250 86.4
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 1.2e-122 443.7 329 66.6
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 8.2e-119 431.0 250 81.6
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.4e-118 429.5 331 63.1
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 9.1e-118 427.6 309 67.3
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 1.6e-117 426.8 280 71.4
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 2.6e-117 426.0 309 66.7
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 5.9e-117 424.9 280 71.1
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 1.3e-116 423.7 314 62.7
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 3.8e-116 422.2 280 70.4
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 5.0e-116 421.8 281 70.8
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 1.2e-114 417.2 330 60.9
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.4e-113 413.7 313 62.9
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.8e-113 413.3 281 69.4
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.8e-113 413.3 281 69.8
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 6.7e-113 411.4 313 62.9
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 6.7e-113 411.4 329 61.4
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.5e-112 410.2 313 62.3
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.6e-112 409.5 281 67.6
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 3.3e-112 409.1 332 65.7
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 9.7e-112 407.5 282 67.7
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 9.7e-112 407.5 280 67.5
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 9.7e-112 407.5 322 61.8
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 1.3e-111 407.1 298 65.1
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 1.7e-111 406.8 325 61.2
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 1.7e-111 406.8 281 68.3
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.7e-111 406.8 283 66.8
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 2.2e-111 406.4 230 83.9
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 2.8e-111 406.0 281 68.3
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.8e-111 405.2 280 68.6
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 1.4e-110 403.7 283 67.5
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 3.1e-110 402.5 281 68.3
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 4.1e-110 402.1 281 68.0
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 5.3e-110 401.7 308 62.0
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 9.1e-110 401.0 281 68.0
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 1.0e-108 397.5 281 66.5
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 1.0e-108 397.5 316 60.4
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 1.5e-107 393.7 313 62.0
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 1.5e-107 393.7 299 63.2
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 1.9e-107 393.3 319 60.2
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 2.5e-107 392.9 305 62.3
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 1.6e-106 390.2 309 60.5
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 6.8e-105 384.8 335 58.2
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 3.4e-104 382.5 335 57.0
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 2.2e-103 379.8 307 60.9
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 2.8e-103 379.4 283 65.0
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 3.7e-103 379.0 306 60.5
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 3.7e-103 379.0 281 63.3
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 1.4e-102 377.1 245 71.4
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.7e-101 372.9 282 61.3
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.3e-100 369.8 257 68.1
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.1e-99 367.5 250 69.2
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 4.2e-99 365.5 279 60.6
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.5e-99 365.2 281 63.0
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.6e-98 363.6 335 54.3
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 8.0e-98 361.3 283 57.6
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 1.8e-97 360.1 335 53.1
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 3.0e-97 359.4 281 59.8
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 4.0e-97 359.0 281 59.4
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 4.0e-97 359.0 335 53.7
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 6.8e-97 358.2 281 59.8
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 6.8e-97 358.2 248 67.7
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 2.0e-96 356.7 281 58.7
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 2.0e-96 356.7 281 60.1
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 2.6e-96 356.3 281 58.4
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 3.4e-96 355.9 281 59.1
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 4.4e-96 355.5 281 58.7
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 7.5e-96 354.8 281 59.1
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 9.8e-96 354.4 335 53.4
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 2.2e-95 353.2 251 64.9
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 4.9e-95 352.1 281 58.4
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 1.4e-94 350.5 256 65.2
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 3.1e-94 349.4 278 59.7
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 5.4e-94 348.6 325 55.4
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 8.0e-90 334.7 257 60.7
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.8e-89 333.6 218 68.8
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.2e-88 330.9 280 58.9
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 3.4e-88 329.3 280 58.6
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 3.7e-87 325.9 282 56.4
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 4.9e-87 325.5 250 60.4
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 1.8e-86 323.6 250 60.0
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 3.2e-86 322.8 280 54.3
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 3.3e-83 312.8 256 59.8
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 6.8e-81 305.1 281 52.7
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 3.4e-80 302.8 285 57.5
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 3.2e-78 296.2 293 50.9
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 4.1e-78 295.8 335 49.0
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 3.0e-76 289.7 189 69.8
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 6.6e-76 288.5 288 52.8
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 8.6e-76 288.1 560 33.9
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 1.8e-73 280.4 325 43.1
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 6.8e-73 278.5 195 65.1
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.1e-69 266.9 295 49.2
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 7.8e-69 265.0 188 62.2
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 8.6e-68 261.5 278 44.2
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 8.9e-65 251.5 281 44.5
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 2.0e-64 250.4 299 40.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 5.8e-64 248.8 148 79.1
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 3.8e-63 246.1 162 68.5
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 1.2e-58 231.1 152 67.8
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.8e-58 229.9 150 66.7
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.5e-51 206.8 198 54.0
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.8e-49 200.7 176 56.2
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 6.9e-49 198.7 240 47.9
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.2e-48 198.0 240 47.9
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.0e-44 184.9 157 60.5
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 4.3e-43 179.5 151 60.9
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 4.5e-40 169.5 216 36.1
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 2.9e-39 166.8 102 78.4
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 2.9e-39 166.8 127 55.9
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 5.5e-38 162.5 100 77.0
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 7.1e-38 162.2 224 42.9
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.1e-35 154.8 127 59.1
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.3e-35 152.9 191 42.9
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 4.8e-34 149.4 113 61.1
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.4e-33 147.9 299 32.1
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 2.2e-31 140.6 149 52.3
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 3.5e-29 133.3 127 55.1
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.1e-22 111.7 74 70.3
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 1.4e-20 104.8 87 65.5
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.3e-18 98.2 75 57.3
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.9e-14 84.3 75 61.3
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.2e-13 81.6 67 62.7
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 3.3e-11 73.6 65 61.5
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.3e-10 69.3 73 47.9
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 2.5e-06 57.4 41 70.7


User provided reference genes

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