Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 0.0e+00 1347.4 955 100.0
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 0.0e+00 1188.3 948 90.0
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 0.0e+00 1177.5 948 86.4
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 0.0e+00 1163.3 948 89.2
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 0.0e+00 1154.8 948 88.8
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 0.0e+00 1129.8 949 86.5
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 0.0e+00 1129.0 989 83.7
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 0.0e+00 1115.5 951 86.0
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 0.0e+00 1104.7 948 85.3
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 0.0e+00 1098.2 948 86.5
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 0.0e+00 1092.0 948 84.6
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 2.1e-305 1052.4 952 83.9
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 3.3e-282 975.3 943 78.0
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 5.7e-282 974.5 954 77.9
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 1.7e-281 973.0 943 79.3
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 3.1e-280 968.8 943 79.6
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 2.6e-279 965.7 946 77.4
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 4.5e-279 964.9 942 77.7
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 2.2e-278 962.6 942 77.7
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 5.0e-278 961.4 961 76.7
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 1.1e-277 960.3 949 75.4
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 1.8e-275 953.0 946 77.4
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 2.3e-275 952.6 943 77.8
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 3.0e-275 952.2 949 77.7
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 5.2e-275 951.4 949 77.8
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 2.8e-273 945.7 957 76.7
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 1.4e-272 943.3 944 77.4
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.8e-272 943.0 968 73.0
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 2.4e-272 942.6 945 77.1
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 5.3e-272 941.4 937 77.2
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 1.6e-271 939.9 955 77.4
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 4.5e-271 938.3 950 75.9
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 1.3e-270 936.8 948 66.2
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 1.5e-269 933.3 957 75.0
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 3.6e-268 928.7 948 65.8
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 5.2e-267 924.9 955 75.3
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 6.8e-267 924.5 954 75.7
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 4.8e-265 918.3 950 76.4
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 4.8e-265 918.3 992 60.7
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 4.1e-264 915.2 952 75.6
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 4.1e-264 915.2 1112 67.4
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 2.2e-262 909.4 954 74.2
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 1.2e-260 903.7 962 74.5
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 3.0e-259 899.0 940 75.0
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 6.8e-259 897.9 942 74.8
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 1.5e-258 896.7 940 75.0
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 5.7e-258 894.8 941 72.3
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.7e-257 892.1 956 74.3
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 4.9e-257 891.7 956 74.3
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 4.9e-257 891.7 941 74.5
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.1e-256 890.6 956 74.2
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 9.2e-256 887.5 940 74.6
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.2e-255 887.1 956 74.1
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.9e-255 884.8 956 74.1
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 1.0e-254 884.0 941 74.4
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 1.7e-254 883.2 961 70.6
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 5.6e-253 878.2 968 69.6
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 2.8e-252 875.9 943 74.0
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 1.0e-251 874.0 941 73.5
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 1.5e-250 870.2 950 73.1
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 2.6e-250 869.4 952 73.9
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 2.9e-249 865.9 943 73.5
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 2.9e-249 865.9 959 64.9
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 3.2e-248 862.4 950 71.1
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 3.2e-248 862.4 947 73.4
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 7.0e-248 861.3 942 70.3
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 9.2e-248 860.9 941 71.4
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 1.2e-247 860.5 955 71.3
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 4.3e-245 852.0 938 69.1
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 7.3e-245 851.3 940 73.3
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 1.0e-243 847.4 962 62.3
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 1.0e-243 847.4 944 72.8
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 1.8e-243 846.7 958 65.1
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 4.4e-242 842.0 942 69.6
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 5.8e-242 841.6 953 70.3
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 1.2e-239 833.9 932 72.5
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 3.5e-239 832.4 955 71.6
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 6.0e-239 831.6 951 68.3
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.3e-238 830.5 967 68.7
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 2.3e-238 829.7 942 71.2
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 8.1e-236 821.2 942 71.7
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 3.1e-235 819.3 942 71.9
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 8.9e-235 817.8 942 71.5
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 2.0e-234 816.6 979 48.9
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 3.4e-234 815.8 942 71.3
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 1.7e-233 813.5 741 74.6
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 1.7e-233 813.5 964 58.1
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 1.9e-232 810.1 942 71.1
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 5.1e-230 802.0 940 70.9
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 4.0e-227 792.3 951 69.9
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 5.8e-226 788.5 958 69.4
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 1.3e-225 787.3 894 73.4
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 1.2e-218 764.2 963 65.7
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.9e-216 756.9 956 68.7
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 3.2e-216 756.1 826 77.2
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 7.1e-216 755.0 958 68.9
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 9.0e-211 738.0 958 65.7
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 9.0e-203 711.4 957 62.2
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 2.1e-199 700.3 1024 58.4
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 3.0e-198 696.4 952 64.1
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 8.7e-198 694.9 875 68.6
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 9.0e-187 658.3 930 61.1
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 7.4e-181 638.6 949 54.2
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.7e-177 627.5 876 65.4
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 2.7e-167 593.6 718 62.7
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 1.4e-163 581.3 957 57.8
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 5.2e-158 562.8 956 57.4
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.4e-155 554.7 963 55.6
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.4e-155 554.7 963 55.6
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 3.1e-155 553.5 979 58.7
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 1.5e-152 544.7 951 56.4
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 2.3e-129 467.6 301 85.4
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 2.3e-126 457.6 663 44.6
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 4.7e-119 433.3 587 62.4
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 1.3e-105 388.7 951 49.3
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 3.9e-97 360.5 598 41.1
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 3.6e-95 354.0 960 42.4
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 7.1e-75 286.6 725 45.0
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 9.4e-59 233.0 135 85.9
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 3.6e-58 231.1 130 92.3
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 8.8e-57 226.5 127 87.4
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 5.3e-54 217.2 125 84.0
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 7.7e-53 213.4 123 83.7
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 3.1e-46 191.4 182 56.0
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 2.7e-37 161.8 123 67.5
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 6.8e-33 147.1 188 47.9
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 9.8e-32 143.3 125 56.0
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 9.1e-30 136.7 77 93.5
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 7.2e-27 127.1 84 75.0
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 7.5e-24 117.1 79 74.7
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 2.2e-23 115.5 127 62.2
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 9.2e-22 110.2 88 55.7
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 3.6e-18 98.2 153 48.4
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.0e-17 96.7 92 51.1
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 3.4e-16 91.7 60 80.0
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 7.5e-16 90.5 82 58.5
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 1.6e-10 72.8 52 67.3
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.1e-09 70.1 75 49.3
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.0e-08 65.9 103 49.5
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 9.8e-08 63.5 56 58.9
BcaB01g03760 Brassica carinata HOM05D000526 ORTHO05D000956 2.9e-07 62.0 160 27.5
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 1.9e-06 59.3 164 26.8
A04p25240 Brassica napus HOM05D000836 ORTHO05D000709 3.2e-06 58.5 170 31.2
BraA04t18027Z Brassica rapa HOM05D000836 ORTHO05D000709 3.2e-06 58.5 170 31.2
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 3.2e-06 58.5 177 25.4
ATR0100G036 Amborella trichopoda HOM05D000526 ORTHO05D000956 4.1e-06 58.2 187 23.5
HPP92_022912 Vanilla planifolia HOM05D003769 ORTHO05D004521 4.1e-06 58.2 164 26.8
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 5.4e-06 57.8 136 26.5
Pp3c19_12460 Physcomitrium patens HOM05D004758 ORTHO05D006063 5.4e-06 57.8 207 23.7
ATR0829G009 Amborella trichopoda HOM05D000526 ORTHO05D000956 7.0e-06 57.4 187 23.5
AUR62029854 Chenopodium quinoa HOM05D003769 ORTHO05D004521 7.0e-06 57.4 116 31.0
Lalb_Chr03g0036201 Lupinus albus HOM05D000836 ORTHO05D000709 7.0e-06 57.4 143 27.3
Nitab4.5_0005880g0030 Nicotiana tabacum HOM05D000526 ORTHO05D000956 7.0e-06 57.4 149 26.8
QL10p018959 Quercus lobata HOM05D000526 ORTHO05D000956 9.2e-06 57.0 177 26.6


User provided reference genes

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