Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 1.4e-70 269.6 151 100.0
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 8.7e-44 180.6 142 69.0
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 6.3e-42 174.5 116 75.9
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 3.1e-41 172.2 144 62.5
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 5.9e-40 167.9 153 59.5
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 2.5e-38 162.5 143 60.1
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 4.3e-35 151.8 138 59.4
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 1.3e-34 150.2 140 60.7
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 1.6e-34 149.8 145 57.2
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 6.9e-33 144.4 146 58.9
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 1.3e-31 140.2 138 58.7
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 2.9e-31 139.0 94 72.3
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 3.8e-31 138.7 92 73.9
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 5.0e-31 138.3 91 73.6
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 6.5e-31 137.9 92 73.9
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 8.5e-31 137.5 88 71.6
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 8.5e-31 137.5 70 85.7
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 8.5e-31 137.5 70 87.1
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 1.4e-30 136.7 70 85.7
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 1.4e-30 136.7 90 73.3
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 1.9e-30 136.3 72 84.7
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 2.5e-30 136.0 72 80.6
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.5e-30 136.0 95 72.6
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 4.2e-30 135.2 70 84.3
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 5.5e-30 134.8 72 84.7
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 7.2e-30 134.4 86 72.1
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 2.1e-29 132.9 88 68.2
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 2.1e-29 132.9 71 81.7
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 2.1e-29 132.9 71 81.7
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 2.1e-29 132.9 71 81.7
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 2.7e-29 132.5 77 76.6
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 4.6e-29 131.7 71 80.3
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 4.6e-29 131.7 71 80.3
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 4.6e-29 131.7 71 80.3
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 4.6e-29 131.7 70 80.0
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 6.1e-29 131.3 86 69.8
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 6.1e-29 131.3 86 69.8
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 6.1e-29 131.3 86 69.8
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 7.9e-29 131.0 124 55.6
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 7.9e-29 131.0 91 61.5
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 7.9e-29 131.0 76 78.9
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 1.0e-28 130.6 71 80.3
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 1.4e-28 130.2 70 82.9
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 3.0e-28 129.0 82 74.4
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 3.9e-28 128.6 79 74.7
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 3.9e-28 128.6 89 68.5
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 3.9e-28 128.6 89 67.4
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 3.9e-28 128.6 89 67.4
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 3.9e-28 128.6 89 67.4
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 5.1e-28 128.3 86 68.6
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.5e-27 126.7 146 50.7
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.5e-27 126.7 146 50.7
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 2.6e-27 125.9 89 67.4
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.3e-26 123.6 70 80.0
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 1.7e-26 123.2 83 69.9
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 3.7e-26 122.1 105 58.1
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 1.4e-25 120.2 70 78.6
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 3.1e-25 119.0 71 78.9
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 4.5e-24 115.2 83 65.1
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 5.9e-24 114.8 57 89.5
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 3.8e-23 112.1 156 44.9
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 5.0e-23 111.7 78 69.2
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 5.0e-23 111.7 78 69.2
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 5.0e-23 111.7 78 69.2
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 6.5e-23 111.3 78 67.9
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 6.5e-23 111.3 78 67.9
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 6.5e-23 111.3 78 67.9
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 6.5e-23 111.3 78 67.9
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 6.5e-23 111.3 78 67.9
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 6.5e-23 111.3 78 67.9
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 6.5e-23 111.3 78 67.9
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 6.5e-23 111.3 78 67.9
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 6.5e-23 111.3 78 67.9
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 8.5e-23 110.9 80 67.5
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 4.2e-22 108.6 80 65.0
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 7.2e-22 107.8 72 70.8
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 9.4e-22 107.5 55 87.3
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 9.4e-22 107.5 55 87.3
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 9.4e-22 107.5 55 87.3
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 9.4e-22 107.5 55 87.3
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 9.4e-22 107.5 55 87.3
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 1.6e-21 106.7 56 87.5
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 2.7e-21 105.9 62 75.8
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 3.0e-20 102.4 55 83.6
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 1.1e-19 100.5 131 50.4
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 1.1e-19 100.5 67 68.7
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-19 100.5 67 68.7
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 1.5e-19 100.1 75 65.3
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 2.0e-19 99.8 81 60.5
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.3e-19 99.0 67 67.2
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 5.7e-19 98.2 63 71.4
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 3.7e-18 95.5 128 46.9
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.7e-18 95.5 128 46.9
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.7e-18 95.5 128 46.9
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 1.6e-16 90.1 72 59.7
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 2.6e-16 89.4 70 64.3
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.5e-16 89.0 61 67.2
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 1.3e-15 87.0 50 76.0
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 1.1e-14 84.0 69 62.3
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 9.4e-14 80.9 76 47.4
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.6e-13 79.0 53 67.9
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 8.8e-12 74.3 66 48.5
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.5e-11 73.6 72 58.3
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 5.7e-11 71.6 48 62.5
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 7.5e-11 71.2 58 55.2
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 7.5e-11 71.2 58 55.2
FAN10G1907 Fragaria x ananassa HOM05D002824 ORTHO05D005776 1.7e-10 70.1 62 54.8
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 4.8e-10 68.6 76 42.1
MBI15_g40528_MAGBIO Magnolia biondii HOM05D002824 ORTHO05D008771 1.1e-09 67.4 48 68.8
FAN22G0293 Fragaria x ananassa HOM05D002824 ORTHO05D008771 1.4e-09 67.0 62 53.2
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 9.1e-09 64.3 45 71.1
Nn002s41361 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.2e-08 63.9 35 77.1
Nn021s41523 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.2e-08 63.9 35 77.1
Nn070s42371 Nelumbo nucifera HOM05D002824 ORTHO05D008771 1.2e-08 63.9 35 77.1
MELO3C032365.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.7e-08 62.8 72 51.4
Nitab4.5_0006114g0040 Nicotiana tabacum HOM05D000388 ORTHO05D009867 5.9e-08 61.6 39 69.2
ClCG11G017170 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.3e-07 60.5 39 74.4
MELO3C033566.2 Cucumis melo HOM05D002824 ORTHO05D008771 1.7e-07 60.1 72 48.6
Nitab4.5_0000173g0110 Nicotiana tabacum HOM05D002824 ORTHO05D007162 8.5e-07 57.8 35 71.4


User provided reference genes

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