Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund30862 Selenicereus undatus HOM05D003042 ORTHO05D003670 6.2e-34 146.7 67 100.0
Nn5g28955 Nelumbo nucifera HOM05D003042 ORTHO05D003670 7.1e-30 133.3 67 85.1
AUR62031295 Chenopodium quinoa HOM05D003042 ORTHO05D003670 9.3e-30 132.9 67 89.6
Eucgr.I02689 Eucalyptus grandis HOM05D003042 ORTHO05D003670 1.6e-29 132.1 67 85.1
AUR62027381 Chenopodium quinoa HOM05D003042 ORTHO05D003670 2.1e-29 131.7 67 88.1
Eucgr.J03099 Eucalyptus grandis HOM05D003042 ORTHO05D003670 2.1e-29 131.7 67 86.6
Thecc.02G142800 Theobroma cacao HOM05D003042 ORTHO05D003670 2.1e-29 131.7 67 85.1
Gohir.A05G120500 Gossypium hirsutum HOM05D003042 ORTHO05D003670 4.6e-29 130.6 67 85.1
Gohir.D05G121500 Gossypium hirsutum HOM05D003042 ORTHO05D003670 4.6e-29 130.6 67 85.1
Gorai.009G125000 Gossypium raimondii HOM05D003042 ORTHO05D003670 4.6e-29 130.6 67 85.1
Duzib160G0927 Durio zibethinus HOM05D003042 ORTHO05D003670 6.0e-29 130.2 67 83.6
GSVIVG01029758001 Vitis vinifera HOM05D003042 ORTHO05D003670 6.0e-29 130.2 67 83.6
EL10Ac8g19347 Beta vulgaris HOM05D003042 ORTHO05D003670 7.8e-29 129.8 67 85.1
Thecc.06G038500 Theobroma cacao HOM05D003042 ORTHO05D003670 1.0e-28 129.4 67 83.6
Carub.0002s2689 Capsella rubella HOM05D003042 ORTHO05D003670 1.7e-28 128.6 67 85.1
Duzib248G0201 Durio zibethinus HOM05D003042 ORTHO05D003670 1.7e-28 128.6 67 80.6
AT1G80670 Arabidopsis thaliana HOM05D003042 ORTHO05D003670 2.3e-28 128.3 67 85.1
Lj9A319T64 Lonicera japonica HOM05D003042 ORTHO05D003670 3.0e-28 127.9 67 82.1
PGR142G0215 Punica granatum HOM05D003042 ORTHO05D003670 3.0e-28 127.9 67 80.6
Glyma.01G067900 Glycine max HOM05D003042 ORTHO05D003670 3.9e-28 127.5 67 82.1
Glyma.02G124400 Glycine max HOM05D003042 ORTHO05D003670 3.9e-28 127.5 67 82.1
Medtr2g008410 Medicago truncatula HOM05D003042 ORTHO05D003670 3.9e-28 127.5 67 82.1
AL2G40770 Arabidopsis lyrata HOM05D003042 ORTHO05D003670 5.1e-28 127.1 67 83.6
Cpa.g.sc10.109 Carica papaya HOM05D003042 ORTHO05D003670 5.1e-28 127.1 66 81.8
Haze_13445 Corylus avellana HOM05D003042 ORTHO05D003670 6.6e-28 126.7 67 83.6
Haze_13447 Corylus avellana HOM05D003042 ORTHO05D003670 6.6e-28 126.7 67 83.6
Phvul.006G208000 Phaseolus vulgaris HOM05D003042 ORTHO05D003670 6.6e-28 126.7 67 83.6
Hund12660 Selenicereus undatus HOM05D003042 ORTHO05D033795 6.6e-28 126.7 84 75.0
Ciclev10025978m.g Citrus clementina HOM05D003042 ORTHO05D003670 8.7e-28 126.3 67 80.6
arahy.Tifrunner.gnm1.ann1.KZIJ4I Arachis hypogaea HOM05D003042 ORTHO05D003670 1.1e-27 125.9 67 79.1
arahy.Tifrunner.gnm1.ann1.QL4S9I Arachis hypogaea HOM05D003042 ORTHO05D003670 1.1e-27 125.9 67 79.1
Eucgr.J03097 Eucalyptus grandis HOM05D003042 ORTHO05D003670 1.1e-27 125.9 65 84.6
CiPaw.01G252700 Carya illinoinensis HOM05D003042 ORTHO05D003670 1.5e-27 125.6 67 83.6
Prupe.1G558700 Prunus persica HOM05D003042 ORTHO05D003670 1.5e-27 125.6 67 82.1
TWI14G0651 Tripterygium wilfordii HOM05D003042 ORTHO05D003670 1.9e-27 125.2 66 81.8
Atru.chr10.2391 Acer truncatum HOM05D003042 ORTHO05D003670 2.5e-27 124.8 67 79.1
arahy.Tifrunner.gnm1.ann1.50NPKB Arachis hypogaea HOM05D003042 ORTHO05D003670 2.5e-27 124.8 67 82.1
arahy.Tifrunner.gnm1.ann1.HI3N32 Arachis hypogaea HOM05D003042 ORTHO05D003670 2.5e-27 124.8 67 82.1
CSS0010904 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 2.5e-27 124.8 67 77.6
CSS0033117 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 2.5e-27 124.8 67 77.6
FvH4_5g30850 Fragaria vesca HOM05D003042 ORTHO05D003670 2.5e-27 124.8 67 79.1
FAN04G2863 Fragaria x ananassa HOM05D003042 ORTHO05D003670 2.5e-27 124.8 67 79.1
FAN13G0196 Fragaria x ananassa HOM05D003042 ORTHO05D003670 2.5e-27 124.8 67 79.1
Manes.04G104800 Manihot esculenta HOM05D003042 ORTHO05D003670 2.5e-27 124.8 67 80.6
Medtr8g068875 Medicago truncatula HOM05D003042 ORTHO05D003670 2.5e-27 124.8 67 79.1
Prupe.7G019500 Prunus persica HOM05D003042 ORTHO05D003670 3.3e-27 124.4 67 80.6
THA.LOC104813581 Tarenaya hassleriana HOM05D003042 ORTHO05D003670 3.3e-27 124.4 67 83.6
CiPaw.15G089000 Carya illinoinensis HOM05D003042 ORTHO05D003670 4.3e-27 124.0 67 82.1
CDE10G1274 Ceratophyllum demersum HOM05D003042 ORTHO05D003670 4.3e-27 124.0 67 77.6
Glyma.15G051700 Glycine max HOM05D003042 ORTHO05D003670 4.3e-27 124.0 67 80.6
Potri.001G048100 Populus trichocarpa HOM05D003042 ORTHO05D003670 4.3e-27 124.0 67 80.6
Sabra03G0131800 Salix brachista HOM05D003042 ORTHO05D003670 4.3e-27 124.0 67 79.1
Lj3g0027683 Lotus japonicus HOM05D003042 ORTHO05D003670 5.6e-27 123.6 67 80.6
Lalb_Chr04g0264341 Lupinus albus HOM05D003042 ORTHO05D003670 5.6e-27 123.6 67 77.6
Phvul.003G032400 Phaseolus vulgaris HOM05D003042 ORTHO05D003670 5.6e-27 123.6 67 79.1
RcHm_v2.0_Chr7g0225991 Rosa chinensis HOM05D003042 ORTHO05D003670 5.6e-27 123.6 67 77.6
Dinv09049 Davidia involucrata HOM05D003042 ORTHO05D003670 7.3e-27 123.2 67 79.1
Potri.003G180000 Populus trichocarpa HOM05D003042 ORTHO05D003670 7.3e-27 123.2 67 80.6
Rhsim11G0134900 Rhododendron simsii HOM05D003042 ORTHO05D003670 7.3e-27 123.2 67 80.6
TAR376G0906 Trochodendron aralioides HOM05D003042 ORTHO05D003670 7.3e-27 123.2 67 76.1
Hma1.2p1_1341F.1_g276910 Hydrangea macrophylla HOM05D003042 ORTHO05D003670 9.6e-27 122.9 67 77.6
Lalb_Chr25g0279011 Lupinus albus HOM05D003042 ORTHO05D003670 9.6e-27 122.9 67 77.6
SGA_v2.0_scaffold45G17302 Striga asiatica HOM05D003042 ORTHO05D003670 9.6e-27 122.9 67 77.6
A02p23240 Brassica napus HOM05D003042 ORTHO05D003670 1.3e-26 122.5 67 85.1
C02p37000 Brassica napus HOM05D003042 ORTHO05D003670 1.3e-26 122.5 67 85.1
BolC2t09716H Brassica oleracea HOM05D003042 ORTHO05D003670 1.3e-26 122.5 67 85.1
BraA02t07322Z Brassica rapa HOM05D003042 ORTHO05D003670 1.3e-26 122.5 67 85.1
Cfa001896 Carpinus fangiana HOM05D003042 ORTHO05D003670 1.3e-26 122.5 67 80.6
COL.COLO4_26659 Corchorus olitorius HOM05D003042 ORTHO05D003670 1.3e-26 122.5 67 79.1
Actinidia00254 Actinidia chinensis HOM05D003042 ORTHO05D003670 1.6e-26 122.1 67 77.6
Actinidia38973 Actinidia chinensis HOM05D003042 ORTHO05D003670 1.6e-26 122.1 67 77.6
CSS0003437 Camellia sinensis var. sinensis HOM05D003042 ORTHO05D003670 1.6e-26 122.1 67 76.1
MELO3C022166.2 Cucumis melo HOM05D003042 ORTHO05D003670 1.6e-26 122.1 67 80.6
CsaV3_5G039870 Cucumis sativus L. HOM05D003042 ORTHO05D003670 1.6e-26 122.1 67 80.6
Thhalv10018796m.g Eutrema salsugineum HOM05D003042 ORTHO05D003670 1.6e-26 122.1 67 85.1
Glyma.08G180700 Glycine max HOM05D003042 ORTHO05D003670 1.6e-26 122.1 67 79.1
HanXRQChr17g0547761 Helianthus annuus HOM05D003042 ORTHO05D003670 1.6e-26 122.1 67 77.6
Nitab4.5_0000078g0100 Nicotiana tabacum HOM05D003042 ORTHO05D003670 1.6e-26 122.1 67 76.1
Nitab4.5_0005663g0040 Nicotiana tabacum HOM05D003042 ORTHO05D003670 1.6e-26 122.1 67 76.1
Sp5g35090 Schrenkiella parvula HOM05D003042 ORTHO05D003670 1.6e-26 122.1 67 85.1
Lsat_1_v5_gn_7_79840 Lactuca sativa HOM05D003042 ORTHO05D003670 2.1e-26 121.7 67 76.1
SGA_v2.0_scaffold60G20842 Striga asiatica HOM05D003042 ORTHO05D003670 2.1e-26 121.7 65 78.5
Aqoxy6G00507 Aquilegia oxysepala HOM05D003042 ORTHO05D003670 2.8e-26 121.3 67 77.6
Lj6g0022000 Lotus japonicus HOM05D003042 ORTHO05D003670 2.8e-26 121.3 67 77.6
TWI12G0856 Tripterygium wilfordii HOM05D003042 ORTHO05D003670 2.8e-26 121.3 67 77.6
Ca_00120_v3 Cicer arietinum L. HOM05D003042 ORTHO05D003670 3.6e-26 120.9 67 80.6
Duzib192G0087 Durio zibethinus HOM05D003042 ORTHO05D003670 3.6e-26 120.9 67 79.1
HanXRQChr03g0067001 Helianthus annuus HOM05D003042 ORTHO05D003670 3.6e-26 120.9 67 77.6
SHI11255 Sapria himalayana HOM05D003042 ORTHO05D003670 3.6e-26 120.9 62 83.9
TPR.G13617 Trifolium pratense HOM05D003042 ORTHO05D003670 3.6e-26 120.9 65 78.5
Ca_10499_v3 Cicer arietinum L. HOM05D003042 ORTHO05D003670 4.8e-26 120.6 67 77.6
FvH4_1g21750 Fragaria vesca HOM05D003042 ORTHO05D003670 4.8e-26 120.6 67 82.1
Lj2g0012532 Lotus japonicus HOM05D003042 ORTHO05D003670 4.8e-26 120.6 67 77.6
Oeu047378.2 Olea europaea HOM05D003042 ORTHO05D003670 4.8e-26 120.6 67 77.6
VMungo0540G1529 Vigna mungo HOM05D003042 ORTHO05D003670 4.8e-26 120.6 67 79.1
FAN23G0925 Fragaria x ananassa HOM05D003042 ORTHO05D003670 6.2e-26 120.2 67 80.6
A07p45040 Brassica napus HOM05D003042 ORTHO05D003670 8.1e-26 119.8 67 82.1
C06p53860 Brassica napus HOM05D003042 ORTHO05D003670 8.1e-26 119.8 67 82.1
BraA07t32007Z Brassica rapa HOM05D003042 ORTHO05D003670 8.1e-26 119.8 67 82.1
FAN28G0628 Fragaria x ananassa HOM05D003042 ORTHO05D003670 8.1e-26 119.8 67 80.6
Cc02_g21810 Coffea canephora HOM05D003042 ORTHO05D003670 1.1e-25 119.4 67 82.1
DCAR_021842 Daucus carota HOM05D003042 ORTHO05D003670 1.1e-25 119.4 67 76.1
Psat0s1783g0040 Pisum sativum HOM05D003042 ORTHO05D003670 1.4e-25 119.0 67 76.1
Psat6g176840 Pisum sativum HOM05D003042 ORTHO05D003670 1.4e-25 119.0 67 76.1
TAR381G1117 Trochodendron aralioides HOM05D003042 ORTHO05D003670 1.4e-25 119.0 67 79.1
MSTRG.16568 Avicennia marina HOM05D003042 ORTHO05D003670 1.8e-25 118.6 67 73.1
FAN26G0050 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.8e-25 118.6 67 80.6
RcHm_v2.0_Chr2g0115621 Rosa chinensis HOM05D003042 ORTHO05D003670 1.8e-25 118.6 67 80.6
Sabra01G0033300 Salix brachista HOM05D003042 ORTHO05D003670 1.8e-25 118.6 65 75.4
GSVIVG01017573001 Vitis vinifera HOM05D003042 ORTHO05D003670 1.8e-25 118.6 63 79.4
BolC6t40401H Brassica oleracea HOM05D003042 ORTHO05D003670 2.4e-25 118.2 67 80.6
PSO541G5257 Papaver somniferum HOM05D003042 ORTHO05D003670 2.4e-25 118.2 67 82.1
PSO675G4282 Papaver somniferum HOM05D003042 ORTHO05D003670 2.4e-25 118.2 67 82.1
Solyc10g047000.2 Solanum lycopersicum HOM05D003042 ORTHO05D003670 2.4e-25 118.2 67 73.1
Sopen10g016960 Solanum pennellii HOM05D003042 ORTHO05D003670 2.4e-25 118.2 67 73.1
QL11p019654 Quercus lobata HOM05D003042 ORTHO05D003670 3.1e-25 117.9 66 75.8
CAN.G1116.6 Capsicum annuum HOM05D003042 ORTHO05D003670 4.0e-25 117.5 66 72.7
Sed0018036 Sechium edule HOM05D003042 ORTHO05D003670 5.3e-25 117.1 67 74.6
ATR0564G171 Amborella trichopoda HOM05D003042 ORTHO05D003670 6.9e-25 116.7 67 80.6
MD08G1221600 Malus domestica HOM05D003042 ORTHO05D003670 6.9e-25 116.7 67 76.1
Prupe.5G049100 Prunus persica HOM05D003042 ORTHO05D003670 6.9e-25 116.7 67 76.1
SalBow5G3148 Salvia bowleyana HOM05D003042 ORTHO05D003670 6.9e-25 116.7 67 74.6
ECA236G1689 Erigeron canadensis HOM05D003042 ORTHO05D003670 9.0e-25 116.3 67 73.1
unitig_748.g7493 Utricularia gibba HOM05D003042 ORTHO05D003670 9.0e-25 116.3 67 74.6
CANSAT54G0208 Cannabis sativa HOM05D003042 ORTHO05D003670 1.5e-24 115.5 67 70.1
CARHR073850 Cardamine hirsuta HOM05D003042 ORTHO05D003670 1.5e-24 115.5 67 80.6
MSTRG.27785 Avicennia marina HOM05D003042 ORTHO05D003670 2.0e-24 115.2 67 71.6
A07p26780 Brassica napus HOM05D003042 ORTHO05D003670 2.0e-24 115.2 60 85.0
MD15G1412500 Malus domestica HOM05D003042 ORTHO05D003670 2.0e-24 115.2 67 76.1
QL05p034606 Quercus lobata HOM05D003042 ORTHO05D003670 2.0e-24 115.2 59 84.7
QL05p034855 Quercus lobata HOM05D003042 ORTHO05D003670 2.0e-24 115.2 59 84.7
BcaC08g45331 Brassica carinata HOM05D003042 ORTHO05D003670 2.6e-24 114.8 67 79.1
C06p29410 Brassica napus HOM05D003042 ORTHO05D003670 2.6e-24 114.8 67 79.1
BolC6t38106H Brassica oleracea HOM05D003042 ORTHO05D003670 2.6e-24 114.8 67 79.1
BraA07t30321Z Brassica rapa HOM05D003042 ORTHO05D003670 2.6e-24 114.8 60 85.0
CBR_g29549 Chara braunii HOM05D003042 ORTHO05D003670 3.4e-24 114.4 67 76.1
ECA240G1546 Erigeron canadensis HOM05D003042 ORTHO05D003670 4.5e-24 114.0 67 73.1
Lsat_1_v5_gn_9_117540 Lactuca sativa HOM05D003042 ORTHO05D003670 5.8e-24 113.6 67 71.6
Os08g0176800 Oryza sativa ssp. japonica HOM05D003042 ORTHO05D003670 5.8e-24 113.6 62 77.4
BcaB02g07258 Brassica carinata HOM05D003042 ORTHO05D003670 1.3e-23 112.5 67 76.1
Zm00001eb412490 Zea mays HOM05D003042 ORTHO05D003670 1.3e-23 112.5 66 75.8
Migut.B00632 Erythranthe guttata HOM05D003042 ORTHO05D003670 2.2e-23 111.7 67 70.1
DCAR_001799 Daucus carota HOM05D003042 ORTHO05D003670 4.9e-23 110.5 67 71.6
TPR.G2525 Trifolium pratense HOM05D003042 ORTHO05D003670 4.9e-23 110.5 67 71.6
COL.COLO4_00107 Corchorus olitorius HOM05D003042 ORTHO05D003670 8.4e-23 109.8 59 79.7
TPR.G2563 Trifolium pratense HOM05D003042 ORTHO05D003670 8.4e-23 109.8 67 67.2
RcHm_v2.0_Chr7g0188071 Rosa chinensis HOM05D003042 ORTHO05D003670 1.1e-22 109.4 67 71.6
EL10Ac9g22228 Beta vulgaris HOM05D003042 ORTHO05D003670 1.4e-22 109.0 65 73.8
PGR031G1207 Punica granatum HOM05D003042 ORTHO05D003670 1.9e-22 108.6 67 67.2
THA.LOC104812445 Tarenaya hassleriana HOM05D003042 ORTHO05D003670 1.9e-22 108.6 67 73.1
Mapoly0084s0068 Marchantia polymorpha HOM05D003042 ORTHO05D003670 2.4e-22 108.2 67 71.6
Medtr1g492860 Medicago truncatula HOM05D003042 ORTHO05D003670 3.2e-22 107.8 66 65.2
ClCG08G001160 Citrullus lanatus HOM05D003042 ORTHO05D003670 7.1e-22 106.7 96 55.2
Pp3c18_21020 Physcomitrium patens HOM05D003042 ORTHO05D003670 7.1e-22 106.7 67 71.6
FvH4_5g10180 Fragaria vesca HOM05D003042 ORTHO05D003670 1.6e-21 105.5 67 70.1
FAN13G0324 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.6e-21 105.5 67 70.1
FAN18G2061 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.6e-21 105.5 67 70.1
FAN08G0173 Fragaria x ananassa HOM05D003042 ORTHO05D003670 2.7e-21 104.8 67 70.1
SEGI_40585 Sequoiadendron giganteum HOM05D003042 ORTHO05D003670 3.5e-21 104.4 67 68.7
Lj5C242G9 Lonicera japonica HOM05D003042 ORTHO05D003670 4.6e-21 104.0 60 75.0
Migut.N01008 Erythranthe guttata HOM05D003042 ORTHO05D003670 1.3e-20 102.4 67 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2566 Anthoceros agrestis HOM05D003042 ORTHO05D003670 2.3e-20 101.7 67 68.7
Os01g0635400 Oryza sativa ssp. japonica HOM05D003042 ORTHO05D003670 2.3e-20 101.7 59 74.6
HPP92_002339 Vanilla planifolia HOM05D003042 ORTHO05D003670 3.9e-20 100.9 50 84.0
Ciclev10027544m.g Citrus clementina HOM05D003042 ORTHO05D009775 6.7e-20 100.1 50 84.0
Zm00001eb158970 Zea mays HOM05D003042 ORTHO05D003670 8.7e-20 99.8 60 70.0
FAN18G0772 Fragaria x ananassa HOM05D003042 ORTHO05D003670 1.5e-19 99.0 67 67.2
Oeu050879.1 Olea europaea HOM05D000472 ORTHO05D000344 3.3e-19 97.8 67 65.7
CDE10G1271 Ceratophyllum demersum HOM05D003042 ORTHO05D003670 4.3e-19 97.4 50 78.0
Aqoxy5G00983 Aquilegia oxysepala HOM05D000003 ORTHO05D008335 7.4e-19 96.7 50 82.0
Hund12671 Selenicereus undatus HOM05D003042 ORTHO05D003670 9.6e-19 96.3 47 95.7
Psat1g218040 Pisum sativum HOM05D003042 ORTHO05D003670 3.6e-18 94.4 50 76.0
FAN04G1953 Fragaria x ananassa HOM05D003042 ORTHO05D003670 6.2e-18 93.6 77 58.4
CBR_g32085 Chara braunii HOM05D003042 ORTHO05D003670 8.1e-18 93.2 51 76.5
Oeu037194.1 Olea europaea HOM05D003280 ORTHO05D009775 1.2e-16 89.4 50 76.0
Ah.01g006780 Amaranthus hybridus HOM05D000263 ORTHO05D000213 1.5e-16 89.0 53 71.7
AL1G28010 Arabidopsis lyrata HOM05D003042 ORTHO05D003670 3.4e-16 87.8 57 68.4
PSO675G1797 Papaver somniferum HOM05D003042 ORTHO05D003670 2.2e-15 85.1 67 61.2
SMO147G0311 Selaginella moellendorffii HOM05D003042 ORTHO05D003670 4.9e-15 84.0 65 60.0
Haze_16644 Corylus avellana HOM05D003042 ORTHO05D003670 8.4e-15 83.2 46 80.4
FAN19G2892 Fragaria x ananassa HOM05D003042 ORTHO05D003670 2.4e-14 81.6 43 88.4
Pp3c19_2820 Physcomitrium patens HOM05D003042 ORTHO05D003670 1.2e-13 79.3 67 58.2
BraA09t38506Z Brassica rapa HOM05D003042 ORTHO05D033795 1.6e-13 79.0 44 77.3
PRCOL_00006870 Prasinoderma coloniale HOM05D003042 ORTHO05D003670 2.1e-13 78.6 59 54.2
MCO09G525 Micromonas commoda HOM05D003042 ORTHO05D003670 5.6e-11 70.5 67 49.3
CARHR016370 Cardamine hirsuta HOM05D003042 ORTHO05D003670 9.3e-06 53.1 41 56.1


User provided reference genes

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