Gene: Solyc10g047000.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc10g047000.2
  • Transcript Identifier Solyc10g047000.2.1
  • Gene Type Coding gene
  • Location SL4.0ch10 : 38133476-38142780 : negative

Gene Family Information

  • ID HOM05D003042
  • #Genes/#Species 226/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc10g047000.2.1
  • uniprot A0A3Q7IEQ4
  • gene_id Solyc10g047000

Descriptions

  • Description WD40 repeat (AHRD V3.3 *** A0A200PQB7_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000972
IBA
GOA Databasetranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
GO:0006405
IBA
GOA DatabaseRNA export from nucleus

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0043130
IBA
GOA Databaseubiquitin binding
GO:0003723
IBA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005643
IBA
GOA Databasenuclear pore
GO:0005635
ISO
PLAZA Integrative Orthologynuclear envelope AT1G80670
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G80670
GO:0080008
ISO
PLAZA Integrative OrthologyCul4-RING E3 ubiquitin ligase complex AT1G80670

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR020472 G-protein beta WD-40 repeat
IPR001680 WD40 repeat
IPR036322 WD40-repeat-containing domain superfamily
Mapman id Description
23.5.1.1.1.9 Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).outer ring.scaffold nucleoporin (RAE1)