Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund29503 Selenicereus undatus HOM05D002578 ORTHO05D005154 1.1e-110 403.3 204 100.0
Hund08206 Selenicereus undatus HOM05D002578 ORTHO05D005154 6.6e-95 350.9 212 88.2
Hund28761 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.1e-92 342.0 223 83.4
Hund29530 Selenicereus undatus HOM05D002578 ORTHO05D005154 8.6e-87 323.9 211 81.0
Hund30213 Selenicereus undatus HOM05D002578 ORTHO05D005154 3.1e-84 315.5 224 77.2
CSS0047935 Camellia sinensis var. sinensis HOM05D002578 ORTHO05D005154 4.1e-81 305.1 223 70.9
Hma1.2p1_0298F.1_g117740 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 9.2e-81 303.9 223 71.3
Hma1.2p1_0818F.1_g223306 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 9.2e-81 303.9 223 71.3
HanXRQChr00c0557g0575711 Helianthus annuus HOM05D002578 ORTHO05D005154 2.7e-80 302.4 223 70.4
CAN.G424.95 Capsicum annuum HOM05D002578 ORTHO05D005154 4.6e-80 301.6 223 70.9
DCAR_032524 Daucus carota HOM05D002578 ORTHO05D005154 7.8e-80 300.8 223 70.9
Hma1.2p1_0104F.1_g050140 Hydrangea macrophylla HOM05D002578 ORTHO05D005154 7.8e-80 300.8 223 70.9
Ah.10g027440 Amaranthus hybridus HOM05D002578 ORTHO05D005154 1.9e-78 296.2 214 72.9
TAR375G1061 Trochodendron aralioides HOM05D002578 ORTHO05D005154 7.3e-78 294.3 223 69.5
ATCG00800 Arabidopsis thaliana HOM05D002578 ORTHO05D005154 1.1e-76 290.4 223 67.3
PSO548G0101 Papaver somniferum HOM05D002578 ORTHO05D005154 1.1e-76 290.4 223 69.1
BNapus_Darmor_BZH_scaffold_253p00370 Brassica napus HOM05D002578 ORTHO05D005154 1.4e-76 290.0 223 67.3
C03p38130 Brassica napus HOM05D002578 ORTHO05D005154 1.4e-76 290.0 223 67.3
BolSC29t60532H Brassica oleracea HOM05D002578 ORTHO05D005154 1.4e-76 290.0 223 67.3
BolSC56t61245H Brassica oleracea HOM05D002578 ORTHO05D005154 1.4e-76 290.0 223 67.3
BraA06t25386Z Brassica rapa HOM05D002578 ORTHO05D005154 1.4e-76 290.0 223 67.3
BraSC103t45443Z Brassica rapa HOM05D002578 ORTHO05D005154 1.4e-76 290.0 223 67.3
BraSC103t45487Z Brassica rapa HOM05D002578 ORTHO05D005154 1.4e-76 290.0 223 67.3
BraSC138t45551Z Brassica rapa HOM05D002578 ORTHO05D005154 1.4e-76 290.0 223 67.3
BraSC59t46568Z Brassica rapa HOM05D002578 ORTHO05D005154 1.4e-76 290.0 223 67.3
CARHR282270 Cardamine hirsuta HOM05D002578 ORTHO05D005154 1.8e-76 289.7 223 66.8
Gohir.1Z049834 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-76 289.7 223 68.2
Cpa.g.sc0.194 Carica papaya HOM05D002578 ORTHO05D005154 3.1e-76 288.9 223 68.6
Gohir.D11G067600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 8.9e-76 287.3 223 67.7
Duzib026G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-75 286.6 220 68.6
Duzib086G0007 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-75 286.6 220 68.6
Duzib125G0004 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-75 286.6 220 68.6
Duzib256G0002 Durio zibethinus HOM05D002578 ORTHO05D005154 1.5e-75 286.6 220 68.6
PGR111G0034 Punica granatum HOM05D002578 ORTHO05D005154 1.5e-75 286.6 223 67.3
Sed0023475 Sechium edule HOM05D002578 ORTHO05D005154 1.5e-75 286.6 223 68.2
SalBow1G1132 Salvia bowleyana HOM05D002578 ORTHO05D005154 2.0e-75 286.2 220 67.7
BolSC35t60726H Brassica oleracea HOM05D002578 ORTHO05D005154 3.4e-75 285.4 224 67.0
Solyc00g500034.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.3e-74 283.5 212 70.8
HanXRQChr01g0020181 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-74 283.1 212 70.3
HanXRQChr04g0127451 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-74 283.1 212 70.3
HanXRQChr12g0369891 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-74 283.1 212 70.3
HanXRQCPg0580221 Helianthus annuus HOM05D002578 ORTHO05D005154 1.7e-74 283.1 212 70.3
HanXRQChr10g0318021 Helianthus annuus HOM05D002578 ORTHO05D005154 3.8e-74 282.0 209 70.8
Thhalv10010706m.g Eutrema salsugineum HOM05D002578 ORTHO05D005154 1.1e-73 280.4 223 65.9
Sc25g0002070 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.9e-73 279.6 212 70.3
Lsat_1_v5_gn_3_22620 Lactuca sativa HOM05D002578 ORTHO05D005154 1.2e-72 276.9 212 68.9
Peaxi162Scf00299g00118 Petunia axillaris HOM05D002578 ORTHO05D005154 3.5e-72 275.4 212 69.3
CAN.G127.12 Capsicum annuum HOM05D002578 ORTHO05D005154 2.3e-71 272.7 223 64.1
Gohir.A08G071000 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.1e-71 271.6 223 64.6
LjContig00318g0021445 Lotus japonicus HOM05D002578 ORTHO05D005154 3.3e-70 268.9 223 63.7
LjContig00319g0008344 Lotus japonicus HOM05D002578 ORTHO05D005154 3.3e-70 268.9 223 63.7
LjContig00319g0015839 Lotus japonicus HOM05D002578 ORTHO05D005154 3.3e-70 268.9 223 63.7
arahy.Tifrunner.gnm1.ann1.I6CLRS Arachis hypogaea HOM05D002578 ORTHO05D005154 2.1e-69 266.2 223 66.4
HanXRQChr10g0284421 Helianthus annuus HOM05D002578 ORTHO05D005154 2.1e-69 266.2 198 70.7
Nitab4.5_0004430g0040 Nicotiana tabacum HOM05D002578 ORTHO05D005154 9.0e-68 260.8 223 65.9
Lsat_1_v5_gn_5_50461 Lactuca sativa HOM05D002578 ORTHO05D005154 6.4e-66 254.6 211 64.0
Zm00001eb039190 Zea mays HOM05D002578 ORTHO05D005154 6.4e-66 254.6 227 59.0
Zm00001eb097380 Zea mays HOM05D002578 ORTHO05D005154 6.4e-66 254.6 227 59.0
Gohir.A12G024500 Gossypium hirsutum HOM05D002578 ORTHO05D005154 3.9e-63 245.4 168 74.4
Medtr4g051410 Medicago truncatula HOM05D002578 ORTHO05D005154 4.8e-61 238.4 221 56.6
Medtr0002s0790 Medicago truncatula HOM05D002578 ORTHO05D005154 2.6e-59 232.6 244 50.8
Nitab4.5_0013360g0010 Nicotiana tabacum HOM05D002578 ORTHO05D005154 2.9e-58 229.2 158 75.3
Sed0004436 Sechium edule HOM05D002578 ORTHO05D005154 1.2e-56 223.8 223 57.0
arahy.Tifrunner.gnm1.ann1.R0YUWC Arachis hypogaea HOM05D002578 ORTHO05D005154 1.3e-55 220.3 170 71.2
Gorai.010G148900 Gossypium raimondii HOM05D002578 ORTHO05D005154 3.0e-55 219.2 168 67.9
Eucgr.C03015 Eucalyptus grandis HOM05D002578 ORTHO05D005154 8.7e-55 217.6 218 56.0
Gohir.A09G101600 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.4e-52 210.3 168 66.7
Zm00001eb434870 Zea mays HOM05D002578 ORTHO05D005154 3.1e-52 209.1 172 62.8
Zm00001eb435640 Zea mays HOM05D002578 ORTHO05D005154 3.1e-52 209.1 172 62.8
Zm00001eb437960 Zea mays HOM05D002578 ORTHO05D005154 3.1e-52 209.1 172 62.8
Zm00001eb439940 Zea mays HOM05D002578 ORTHO05D005154 3.1e-52 209.1 172 62.8
Zm00001eb439960 Zea mays HOM05D002578 ORTHO05D005154 3.1e-52 209.1 172 62.8
Zm00001eb440780 Zea mays HOM05D002578 ORTHO05D005154 3.1e-52 209.1 172 62.8
AL2G20530 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.4e-51 205.7 160 66.9
Psat4g046880 Pisum sativum HOM05D002578 ORTHO05D005154 4.5e-51 205.3 224 50.9
arahy.Tifrunner.gnm1.ann1.YJ6L74 Arachis hypogaea HOM05D002578 ORTHO05D005154 5.8e-51 204.9 223 55.2
AL1G45070 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 2.2e-50 203.0 160 66.2
Gohir.D06G105066 Gossypium hirsutum HOM05D002578 ORTHO05D005154 6.5e-50 201.4 223 52.0
HanXRQChr14g0432301 Helianthus annuus HOM05D002578 ORTHO05D005154 1.9e-49 199.9 138 72.5
Atru.chr11.440 Acer truncatum HOM05D002578 ORTHO05D005154 1.9e-46 189.9 182 61.0
Gohir.A12G090125 Gossypium hirsutum HOM05D002578 ORTHO05D005154 5.7e-46 188.3 154 64.9
MELO3C004853.2 Cucumis melo HOM05D002578 ORTHO05D005154 9.6e-46 187.6 209 52.2
Sc16g0004460 Simmondsia chinensis HOM05D002578 ORTHO05D005154 1.3e-45 187.2 149 67.1
arahy.Tifrunner.gnm1.ann1.ID3W56 Arachis hypogaea HOM05D002578 ORTHO05D005154 2.4e-44 183.0 151 66.9
Oeu062830.1 Olea europaea HOM05D002578 ORTHO05D005154 4.1e-44 182.2 145 67.6
Zm00001eb115040 Zea mays HOM05D002578 ORTHO05D005154 4.5e-43 178.7 149 61.1
Potri.017G072340 Populus trichocarpa HOM05D002578 ORTHO05D005154 2.9e-42 176.0 167 59.9
Gohir.D01G102164 Gossypium hirsutum HOM05D002578 ORTHO05D005154 4.6e-40 168.7 142 62.0
Gorai.011G034100 Gossypium raimondii HOM05D002578 ORTHO05D005154 4.6e-40 168.7 143 65.0
Medtr8g038470 Medicago truncatula HOM05D002578 ORTHO05D005154 1.3e-39 167.2 168 54.2
Zm00001eb435100 Zea mays HOM05D002578 ORTHO05D005154 8.7e-39 164.5 137 61.3
Lsat_1_v5_gn_3_113300 Lactuca sativa HOM05D002578 ORTHO05D005154 2.5e-38 162.9 124 68.5
QL93p1043_0025 Quercus lobata HOM05D002578 ORTHO05D005154 5.7e-38 161.8 143 59.4
Lalb_Chr17g0337521 Lupinus albus HOM05D002578 ORTHO05D005154 2.2e-37 159.8 141 62.4
AL2G21750 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.7e-37 159.1 108 74.1
Psat5g168200 Pisum sativum HOM05D002578 ORTHO05D005154 1.4e-36 157.1 160 52.5
Sc09g0006250 Simmondsia chinensis HOM05D002578 ORTHO05D005154 4.1e-36 155.6 141 59.6
Gorai.012G056700 Gossypium raimondii HOM05D002578 ORTHO05D005154 6.9e-36 154.8 111 71.2
HanXRQChr00c0593g0576401 Helianthus annuus HOM05D002578 ORTHO05D005154 2.6e-35 152.9 122 67.2
HanXRQChr16g0526141 Helianthus annuus HOM05D002578 ORTHO05D005154 7.7e-35 151.4 100 74.0
Nn4g25225 Nelumbo nucifera HOM05D002578 ORTHO05D005154 3.8e-34 149.1 112 71.4
Gohir.D04G051050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 8.5e-34 147.9 111 67.6
ATR0306G002 Amborella trichopoda HOM05D002578 ORTHO05D005154 1.9e-33 146.7 126 61.9
Psat3g190920 Pisum sativum HOM05D002578 ORTHO05D005154 2.7e-32 142.9 148 53.4
arahy.Tifrunner.gnm1.ann1.EHS3F0 Arachis hypogaea HOM05D002578 ORTHO05D005154 1.4e-31 140.6 126 60.3
Lj2P1237T124 Lonicera japonica HOM05D002578 ORTHO05D005154 3.0e-31 139.4 122 62.3
Lj2P1239T79 Lonicera japonica HOM05D002578 ORTHO05D005154 3.0e-31 139.4 122 62.3
Lju5009P0T57 Lonicera japonica HOM05D002578 ORTHO05D005154 3.0e-31 139.4 122 62.3
Ah.10g027320 Amaranthus hybridus HOM05D002578 ORTHO05D005154 8.8e-31 137.9 115 66.1
Potri.012G047500 Populus trichocarpa HOM05D002578 ORTHO05D005154 3.3e-30 136.0 99 69.7
Gohir.A02G112702 Gossypium hirsutum HOM05D002578 ORTHO05D005154 9.7e-30 134.4 113 63.7
SMO086G0021 Selaginella moellendorffii HOM05D002578 ORTHO05D005154 1.7e-29 133.7 222 37.4
Solyc00g500153.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 3.7e-29 132.5 106 67.9
Lsat_1_v5_gn_5_168120 Lactuca sativa HOM05D002578 ORTHO05D005154 4.8e-29 132.1 122 61.5
Solyc09g050066.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 6.3e-29 131.7 118 61.9
Migut.D01327 Erythranthe guttata HOM05D002578 ORTHO05D005154 1.5e-27 127.1 77 83.1
Lalb_Chr23g0274261 Lupinus albus HOM05D002578 ORTHO05D005154 8.5e-26 121.3 129 53.5
Hund07448 Selenicereus undatus HOM05D002578 ORTHO05D005154 8.5e-26 121.3 101 65.3
SEGI_06953 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 9.4e-25 117.9 117 53.0
SEGI_07135 Sequoiadendron giganteum HOM05D000890 ORTHO05D000697 9.4e-25 117.9 117 53.0
SEGI_26563 Sequoiadendron giganteum HOM05D000540 ORTHO05D002320 9.4e-25 117.9 117 53.0
SEGI_30011 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 9.4e-25 117.9 117 53.0
SEGI_35211 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 9.4e-25 117.9 117 53.0
SEGI_36364 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 9.4e-25 117.9 117 53.0
SEGI_41075 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 9.4e-25 117.9 117 53.0
SEGI_32412 Sequoiadendron giganteum HOM05D000540 ORTHO05D005154 2.7e-24 116.3 117 52.1
SEGI_06984 Sequoiadendron giganteum HOM05D002578 ORTHO05D005154 1.4e-23 114.0 117 52.1
Eucgr.E01404 Eucalyptus grandis HOM05D002578 ORTHO05D005154 1.1e-22 110.9 103 57.3
SEGI_12372 Sequoiadendron giganteum HOM05D000445 ORTHO05D005154 2.0e-22 110.2 113 51.3
CAN.G134.2 Capsicum annuum HOM05D002578 ORTHO05D005154 4.4e-22 109.0 72 75.0
Lsat_1_v5_gn_5_168100 Lactuca sativa HOM05D002578 ORTHO05D005154 2.2e-21 106.7 89 62.9
Aqoxy5G00925 Aquilegia oxysepala HOM05D002578 ORTHO05D005154 8.2e-21 104.8 88 61.4
HanXRQChr11g0321131 Helianthus annuus HOM05D002578 ORTHO05D005154 1.1e-20 104.4 67 79.1
AL5G19940 Arabidopsis lyrata HOM05D002578 ORTHO05D005154 3.1e-20 102.8 67 76.1
Lalb_Chr13g0292561 Lupinus albus HOM05D002578 ORTHO05D005154 2.6e-19 99.8 96 55.2
CAN.G1078.3 Capsicum annuum HOM05D002578 ORTHO05D005154 3.5e-19 99.4 71 73.2
PGSC0003DMG400003499 Solanum tuberosum HOM05D002578 ORTHO05D005154 1.0e-18 97.8 64 73.4
HanXRQChr16g0503681 Helianthus annuus HOM05D002578 ORTHO05D005154 2.2e-18 96.7 93 54.8
SEGI_32821 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 5.0e-18 95.5 94 53.2
Solyc12g035880.1 Solanum lycopersicum HOM05D002578 ORTHO05D005154 1.9e-17 93.6 76 65.8
Ciclev10006396m.g Citrus clementina HOM05D002578 ORTHO05D005154 3.2e-17 92.8 66 66.7
Lalb_Chr25g0282891 Lupinus albus HOM05D002578 ORTHO05D005154 5.5e-17 92.0 71 66.2
Gorai.001G190500 Gossypium raimondii HOM05D002578 ORTHO05D002698 2.7e-16 89.7 66 71.2
HanXRQChr11g0321141 Helianthus annuus HOM05D002578 ORTHO05D002698 3.6e-16 89.4 43 90.7
Nitab4.5_0001339g0110 Nicotiana tabacum HOM05D002578 ORTHO05D005154 3.6e-16 89.4 76 65.8
TWI14G1004 Tripterygium wilfordii HOM05D002578 ORTHO05D005154 3.6e-16 89.4 85 56.5
CsaV3_4G010600 Cucumis sativus L. HOM05D002578 ORTHO05D005154 8.0e-16 88.2 79 60.8
Mapoly0015s0207 Marchantia polymorpha HOM05D002578 ORTHO05D005154 8.8e-15 84.7 79 54.4
Migut.D01324 Erythranthe guttata HOM05D002578 ORTHO05D005154 4.4e-14 82.4 72 61.1
Nn1g08404 Nelumbo nucifera HOM05D002578 ORTHO05D005154 4.4e-14 82.4 75 58.7
HanXRQChr05g0152541 Helianthus annuus HOM05D002578 ORTHO05D005154 5.7e-14 82.0 75 58.7
HanXRQChr11g0327001 Helianthus annuus HOM05D002578 ORTHO05D005154 5.7e-14 82.0 75 58.7
BraSC58t46504Z Brassica rapa HOM05D002578 ORTHO05D005154 1.7e-13 80.5 54 72.2
RcHm_v2.0_Chr2g0118541 Rosa chinensis HOM05D002578 ORTHO05D005154 1.7e-13 80.5 75 57.3
Eucgr.F03422 Eucalyptus grandis HOM05D002578 ORTHO05D005154 8.2e-13 78.2 101 44.6
SEGI_09039 Sequoiadendron giganteum HOM05D002578 ORTHO05D004083 8.2e-13 78.2 66 59.1
SEGI_31371 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 8.2e-13 78.2 66 59.1
SEGI_36078 Sequoiadendron giganteum HOM05D000540 ORTHO05D000681 8.2e-13 78.2 66 59.1
Gohir.D09G093200 Gossypium hirsutum HOM05D002578 ORTHO05D005154 1.8e-12 77.0 75 56.0
Eucgr.L01887 Eucalyptus grandis HOM05D002578 ORTHO05D005154 2.4e-12 76.6 54 70.4
MD14G1153600 Malus domestica HOM05D002578 ORTHO05D005154 2.4e-12 76.6 75 53.3
SEGI_13221 Sequoiadendron giganteum HOM05D000540 ORTHO05D004018 2.4e-12 76.6 66 59.1
Potri.002G235600 Populus trichocarpa HOM05D002578 ORTHO05D005154 5.3e-12 75.5 75 53.3
Gohir.A09G103050 Gossypium hirsutum HOM05D002578 ORTHO05D005154 7.0e-12 75.1 73 56.2
Ah.10g029000 Amaranthus hybridus HOM05D002578 ORTHO05D002698 1.0e-10 71.2 52 69.2
CiPaw.10G131300 Carya illinoinensis HOM05D002578 ORTHO05D005154 2.9e-10 69.7 88 47.7
arahy.Tifrunner.gnm1.ann1.HB4K1E Arachis hypogaea HOM05D002578 ORTHO05D005154 3.8e-10 69.3 38 81.6
Lalb_Chr23g0274271 Lupinus albus HOM05D002578 ORTHO05D005154 1.5e-09 67.4 48 68.8
Hund08116 Selenicereus undatus HOM05D002578 ORTHO05D005154 5.5e-09 65.5 40 77.5
Solyc11g039530.2 Solanum lycopersicum HOM05D002578 ORTHO05D005154 7.2e-09 65.1 52 65.4
Cpa.g.sc301.3 Carica papaya HOM05D002578 ORTHO05D005820 2.1e-08 63.5 42 76.2
CsaV3_5G013710 Cucumis sativus L. HOM05D007755 ORTHO05D009866 6.1e-08 62.0 47 61.7
Hund18006 Selenicereus undatus HOM05D002578 ORTHO05D005154 8.0e-08 61.6 67 56.7
Lj2A1234G110 Lonicera japonica HOM05D002578 ORTHO05D005154 1.4e-07 60.8 61 54.1
Sc25g0002540 Simmondsia chinensis HOM05D002578 ORTHO05D001488 4.0e-07 59.3 39 69.2
Nn4g25226 Nelumbo nucifera HOM05D002578 ORTHO05D005154 3.4e-06 56.2 27 85.2
Nn7g37550 Nelumbo nucifera HOM05D002578 ORTHO05D005154 3.4e-06 56.2 27 85.2
Psat6g181640 Pisum sativum HOM05D002578 ORTHO05D005154 7.5e-06 55.1 61 49.2


User provided reference genes

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