Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Hund27923 Selenicereus undatus HOM05D003916 ORTHO05D380132 3.2e-59 231.5 111 100.0
Hund20252 Selenicereus undatus HOM05D003916 ORTHO05D004655 1.2e-10 70.1 35 91.4
AUR62018571 Chenopodium quinoa HOM05D003916 ORTHO05D004655 2.1e-10 69.3 35 91.4
AUR62020845 Chenopodium quinoa HOM05D003916 ORTHO05D004655 2.1e-10 69.3 35 91.4
Sc10g0000140 Simmondsia chinensis HOM05D003916 ORTHO05D004655 3.6e-10 68.6 35 91.4
arahy.Tifrunner.gnm1.ann1.8R0KJ7 Arachis hypogaea HOM05D003916 ORTHO05D004655 4.6e-10 68.2 59 61.0
EL10Ac3g07468 Beta vulgaris HOM05D003916 ORTHO05D004655 7.9e-10 67.4 35 88.6
vmacro13676 Vaccinium macrocarpon HOM05D003916 ORTHO05D004655 7.9e-10 67.4 50 68.0
Gohir.A08G054500 Gossypium hirsutum HOM05D003916 ORTHO05D004655 3.0e-09 65.5 36 88.9
Gorai.004G066500 Gossypium raimondii HOM05D003916 ORTHO05D004655 3.0e-09 65.5 36 88.9
Actinidia19401 Actinidia chinensis HOM05D003916 ORTHO05D004655 3.9e-09 65.1 38 81.6
Oeu061209.2 Olea europaea HOM05D003916 ORTHO05D004655 3.9e-09 65.1 37 83.8
Sc11g0009080 Simmondsia chinensis HOM05D003916 ORTHO05D004655 3.9e-09 65.1 35 85.7
TAR636G0073 Trochodendron aralioides HOM05D003916 ORTHO05D004655 5.1e-09 64.7 38 78.9
Gohir.A05G320501 Gossypium hirsutum HOM05D003916 ORTHO05D004655 6.7e-09 64.3 36 86.1
Gohir.D05G317100 Gossypium hirsutum HOM05D003916 ORTHO05D004655 6.7e-09 64.3 36 86.1
Gorai.009G339400 Gossypium raimondii HOM05D003916 ORTHO05D004655 6.7e-09 64.3 36 86.1
GSVIVG01036004001 Vitis vinifera HOM05D003916 ORTHO05D004655 6.7e-09 64.3 36 83.3
Ciclev10033103m.g Citrus clementina HOM05D003916 ORTHO05D004655 8.8e-09 63.9 35 85.7
Gohir.D08G064200 Gossypium hirsutum HOM05D003916 ORTHO05D004655 8.8e-09 63.9 36 86.1
ClCG10G012300 Citrullus lanatus HOM05D003916 ORTHO05D004655 1.1e-08 63.5 36 83.3
DCAR_022384 Daucus carota HOM05D003916 ORTHO05D004655 1.1e-08 63.5 36 83.3
Migut.D01881 Erythranthe guttata HOM05D003916 ORTHO05D004655 1.1e-08 63.5 36 86.1
Migut.E00937 Erythranthe guttata HOM05D003916 ORTHO05D004655 1.1e-08 63.5 36 86.1
Migut.O00412 Erythranthe guttata HOM05D003916 ORTHO05D004655 1.1e-08 63.5 36 86.1
BraA04t16424Z Brassica rapa HOM05D003916 ORTHO05D004655 1.5e-08 63.2 43 72.1
BraA09t39977Z Brassica rapa HOM05D003916 ORTHO05D004655 1.5e-08 63.2 36 83.3
SGA_v2.0_scaffold114G31877 Striga asiatica HOM05D003916 ORTHO05D004655 1.5e-08 63.2 36 83.3
Cc03_g12460 Coffea canephora HOM05D003916 ORTHO05D004655 1.9e-08 62.8 35 82.9
MELO3C023983.2 Cucumis melo HOM05D003916 ORTHO05D004655 1.9e-08 62.8 38 76.3
CsaV3_3G032080 Cucumis sativus L. HOM05D003916 ORTHO05D004655 1.9e-08 62.8 38 76.3
ECA234G4622 Erigeron canadensis HOM05D003916 ORTHO05D004655 1.9e-08 62.8 35 82.9
Aa31LG10G7160 Aethionema arabicum HOM05D003916 ORTHO05D004655 2.5e-08 62.4 34 88.2
CSS0038705 Camellia sinensis var. sinensis HOM05D003916 ORTHO05D004655 2.5e-08 62.4 35 82.9
PSO591G0016 Papaver somniferum HOM05D003916 ORTHO05D004655 2.5e-08 62.4 35 80.0
Atru.chr11.2605 Acer truncatum HOM05D003916 ORTHO05D004655 3.3e-08 62.0 35 82.9
BcaC02g09283 Brassica carinata HOM05D003916 ORTHO05D004655 3.3e-08 62.0 36 80.6
A04p07280 Brassica napus HOM05D003916 ORTHO05D004655 3.3e-08 62.0 36 80.6
C04p40890 Brassica napus HOM05D003916 ORTHO05D004655 3.3e-08 62.0 36 80.6
BolC4t25674H Brassica oleracea HOM05D003916 ORTHO05D004655 3.3e-08 62.0 36 80.6
Dinv09344 Davidia involucrata HOM05D003916 ORTHO05D004655 3.3e-08 62.0 35 82.9
Manes.10G140600 Manihot esculenta HOM05D003916 ORTHO05D004655 3.3e-08 62.0 35 82.9
Oeu048996.1 Olea europaea HOM05D003916 ORTHO05D004655 3.3e-08 62.0 35 82.9
Potri.009G070900 Populus trichocarpa HOM05D003916 ORTHO05D004655 3.3e-08 62.0 35 82.9
Rhsim07G0056500 Rhododendron simsii HOM05D003916 ORTHO05D004655 3.3e-08 62.0 35 82.9
SGA_v2.0_scaffold7G04094 Striga asiatica HOM05D003916 ORTHO05D004655 3.3e-08 62.0 35 85.7
Thecc.01G409200 Theobroma cacao HOM05D003916 ORTHO05D004655 3.3e-08 62.0 35 82.9
Zm00001eb247270 Zea mays HOM05D003916 ORTHO05D004655 3.3e-08 62.0 36 80.6
BcaB01g00447 Brassica carinata HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 82.9
BcaB02g08590 Brassica carinata HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 82.9
BcaNung06090 Brassica carinata HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 82.9
A09p45160 Brassica napus HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 82.9
C08p27350 Brassica napus HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 82.9
Medtr4g037750 Medicago truncatula HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 80.0
PSO782G0643 Papaver somniferum HOM05D003916 ORTHO05D004655 4.3e-08 61.6 44 65.9
PSO832G0252 Papaver somniferum HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 77.1
Psat0s2770g0080 Pisum sativum HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 80.0
Prupe.8G106600 Prunus persica HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 82.9
RcHm_v2.0_Chr6g0262241 Rosa chinensis HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 82.9
SalBow8G4163 Salvia bowleyana HOM05D003916 ORTHO05D004655 4.3e-08 61.6 36 83.3
Sp5g10210 Schrenkiella parvula HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 82.9
Sed0020332 Sechium edule HOM05D003916 ORTHO05D004655 4.3e-08 61.6 38 73.7
TPR.G3662 Trifolium pratense HOM05D003916 ORTHO05D004655 4.3e-08 61.6 35 80.0
CiPaw.13G006500 Carya illinoinensis HOM05D003916 ORTHO05D004655 5.7e-08 61.2 36 77.8
Sabra09G0053700 Salix brachista HOM05D003916 ORTHO05D004655 5.7e-08 61.2 38 76.3
SEGI_28477 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 5.7e-08 61.2 36 80.6
unitig_0.g2398 Utricularia gibba HOM05D003916 ORTHO05D004655 5.7e-08 61.2 36 77.8
arahy.Tifrunner.gnm1.ann1.YBFT0T Arachis hypogaea HOM05D003916 ORTHO05D004655 7.4e-08 60.8 35 80.0
MSTRG.9650 Avicennia marina HOM05D003916 ORTHO05D004655 7.4e-08 60.8 36 77.8
CARHR161800 Cardamine hirsuta HOM05D003916 ORTHO05D004655 7.4e-08 60.8 35 80.0
COL.COLO4_11374 Corchorus olitorius HOM05D003916 ORTHO05D004655 7.4e-08 60.8 35 82.9
FvH4_2g07830 Fragaria vesca HOM05D003916 ORTHO05D004655 7.4e-08 60.8 35 82.9
FAN15G2464 Fragaria x ananassa HOM05D003916 ORTHO05D004655 7.4e-08 60.8 35 82.9
FAN20G2116 Fragaria x ananassa HOM05D003916 ORTHO05D004655 7.4e-08 60.8 35 82.9
FAN24G3392 Fragaria x ananassa HOM05D003916 ORTHO05D004655 7.4e-08 60.8 35 82.9
FAN27G3016 Fragaria x ananassa HOM05D003916 ORTHO05D004655 7.4e-08 60.8 35 82.9
Glyma.09G228500 Glycine max HOM05D003916 ORTHO05D004655 7.4e-08 60.8 35 80.0
Hma1.2p1_0184F.1_g081310 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 7.4e-08 60.8 35 80.0
Hma1.2p1_0495F.1_g165640 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 7.4e-08 60.8 35 80.0
AL5G32640 Arabidopsis lyrata HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
AT3G52090 Arabidopsis thaliana HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
CANSAT35G0488 Cannabis sativa HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
Carub.0005s1841 Capsella rubella HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
Cfa010792 Carpinus fangiana HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
Haze_03179 Corylus avellana HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
Haze_25581 Corylus avellana HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
DCAR_003218 Daucus carota HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
Dinv43429 Davidia involucrata HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
Duzib138G1764 Durio zibethinus HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
Eucgr.G03369 Eucalyptus grandis HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 77.1
Glyma.12G008000 Glycine max HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 77.1
Manes.07G007100 Manihot esculenta HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
QL04p008135 Quercus lobata HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
QL04p008511 Quercus lobata HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
Zm00001eb214480 Zea mays HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
Zm00001eb247210 Zea mays HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
Zm00001eb247250 Zea mays HOM05D003916 ORTHO05D004655 9.7e-08 60.5 35 80.0
COL.COLO4_04866 Corchorus olitorius HOM05D003916 ORTHO05D004655 1.3e-07 60.1 35 80.0
Lalb_Chr03g0040011 Lupinus albus HOM05D003916 ORTHO05D004655 1.3e-07 60.1 35 77.1
MD10G1083600 Malus domestica HOM05D003916 ORTHO05D004655 1.3e-07 60.1 35 80.0
Phvul.011G010100 Phaseolus vulgaris HOM05D003916 ORTHO05D004655 1.3e-07 60.1 35 77.1
Solyc11g069910.2 Solanum lycopersicum HOM05D003916 ORTHO05D004655 1.3e-07 60.1 35 85.7
Sopen11g028370 Solanum pennellii HOM05D003916 ORTHO05D004655 1.3e-07 60.1 35 85.7
PGSC0003DMG400008095 Solanum tuberosum HOM05D003916 ORTHO05D004655 1.3e-07 60.1 35 85.7
VMungo1127G0323 Vigna mungo HOM05D003916 ORTHO05D004655 1.7e-07 59.7 35 77.1
Peaxi162Scf00948g00222 Petunia axillaris HOM05D003916 ORTHO05D004655 2.2e-07 59.3 35 82.9
TAR633G2550 Trochodendron aralioides HOM05D003916 ORTHO05D004655 2.2e-07 59.3 35 80.0
CAN.G631.46 Capsicum annuum HOM05D003916 ORTHO05D004655 2.8e-07 58.9 35 82.9
ECA248G0794 Erigeron canadensis HOM05D003916 ORTHO05D004655 2.8e-07 58.9 35 77.1
Thhalv10010833m.g Eutrema salsugineum HOM05D003916 ORTHO05D004655 2.8e-07 58.9 35 77.1
Lj3g0019679 Lotus japonicus HOM05D003916 ORTHO05D004655 2.8e-07 58.9 35 77.1
MBI04_g41600_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 2.8e-07 58.9 35 80.0
Nn7g36243 Nelumbo nucifera HOM05D003916 ORTHO05D004655 2.8e-07 58.9 35 77.1
Nitab4.5_0000130g0090 Nicotiana tabacum HOM05D003916 ORTHO05D004655 2.8e-07 58.9 35 82.9
Nitab4.5_0005283g0050 Nicotiana tabacum HOM05D003916 ORTHO05D004655 2.8e-07 58.9 35 82.9
Nitab4.5_0010117g0010 Nicotiana tabacum HOM05D003916 ORTHO05D004655 2.8e-07 58.9 35 82.9
PSO063G3578 Papaver somniferum HOM05D003916 ORTHO05D004655 2.8e-07 58.9 44 63.6
PGR031G2324 Punica granatum HOM05D003916 ORTHO05D004655 2.8e-07 58.9 35 77.1
Peaxi162Scf00619g00024 Petunia axillaris HOM05D003916 ORTHO05D004655 4.8e-07 58.2 35 80.0
TWI09G0558 Tripterygium wilfordii HOM05D003916 ORTHO05D004655 4.8e-07 58.2 35 77.1
A03p48670 Brassica napus HOM05D003916 ORTHO05D004655 6.3e-07 57.8 36 72.2
BraA03t13970Z Brassica rapa HOM05D003916 ORTHO05D004655 6.3e-07 57.8 36 72.2
Duzib133G0053 Durio zibethinus HOM05D003916 ORTHO05D004655 6.3e-07 57.8 36 75.0
THA.LOC104801974 Tarenaya hassleriana HOM05D003916 ORTHO05D004655 6.3e-07 57.8 35 77.1
Ca_04149_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 8.2e-07 57.4 35 74.3
Ca_22196_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 8.2e-07 57.4 35 74.3
HanXRQChr01g0016491 Helianthus annuus HOM05D003916 ORTHO05D004655 8.2e-07 57.4 35 74.3
Lsat_1_v5_gn_1_106300 Lactuca sativa HOM05D003916 ORTHO05D004655 8.2e-07 57.4 35 74.3
MD05G1071600 Malus domestica HOM05D003916 ORTHO05D004655 8.2e-07 57.4 35 74.3
MBI04_g44437_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 1.1e-06 57.0 34 79.4
Nitab4.5_0002959g0030 Nicotiana tabacum HOM05D003916 ORTHO05D004655 1.8e-06 56.2 35 80.0
Os07g0172500 Oryza sativa ssp. japonica HOM05D003916 ORTHO05D004655 1.8e-06 56.2 35 71.4
MBI06_g01064_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 2.4e-06 55.8 35 74.3
HPP92_009912 Vanilla planifolia HOM05D003916 ORTHO05D004655 2.4e-06 55.8 35 74.3
ATR0751G171 Amborella trichopoda HOM05D003916 ORTHO05D004655 3.1e-06 55.5 37 70.3
Aqoxy3G00363 Aquilegia oxysepala HOM05D003916 ORTHO05D004655 5.3e-06 54.7 35 71.4
arahy.Tifrunner.gnm1.ann1.KPCT5J Arachis hypogaea HOM05D003916 ORTHO05D004655 5.3e-06 54.7 35 68.6
arahy.Tifrunner.gnm1.ann1.U5V8MN Arachis hypogaea HOM05D003916 ORTHO05D004655 5.3e-06 54.7 35 68.6
Cpa.g.sc125.23 Carica papaya HOM05D003916 ORTHO05D004655 5.3e-06 54.7 36 69.4
AagrBONN_evm.TU.Sc2ySwM_368.1572 Anthoceros agrestis HOM05D003916 ORTHO05D004655 6.9e-06 54.3 35 71.4
ClCG09G004040 Citrullus lanatus HOM05D003916 ORTHO05D004655 6.9e-06 54.3 37 73.0
Zm00001eb247220 Zea mays HOM05D003916 ORTHO05D004655 6.9e-06 54.3 35 74.3
MELO3C023562.2 Cucumis melo HOM05D003916 ORTHO05D004655 9.1e-06 53.9 37 73.0
CsaV3_7G030940 Cucumis sativus L. HOM05D003916 ORTHO05D004655 9.1e-06 53.9 37 73.0
Sed0017618 Sechium edule HOM05D003916 ORTHO05D004655 9.1e-06 53.9 37 73.0


User provided reference genes

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